Gene detail

Detail information of Am02G016860.1 Annotation

Gene ID	Annotation
Am02G016860.1	chromatin remodeling 8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G016860.1	mRNA	Chr02	127822643	127829347	+

Sequences

CDS:

>Am02G016860.1
ATGGAGGAAGAACAAGATCGAATTTTGCTCACTAGTTTGGGCGTTAAGTCTGCCAATCCCGAAGATATTGAACGCCATGTTCTGGAAAAGGCAACTAGGAATGATGCAGTTAGCGTTACTGAAGTTGAAGGGGACAACGATGAAGAAGAATGTCCTCGTTTACCTGAAATTGTTGATCCCTCATCTATTGCTAAAGCAGAACTTCTTCAGAAATTGAGGGCGGTAGCTTTTGAAATAGATGCAGTCTCTTCCACTATTCAACGGTCAAGAAATATTCAAAACGATGGAGAATGTGCTGATGATGGTGAGGACAACTCAGAGGAAGGGATTGCTGAAGGTGATACCTCCGGTGGTTCGAACCTTCAGCATGTTCTGGCCGTCGATAGGCTGAGAAGCCTGAAGAACACAAAGGCTCAACTAGAGAAAGAGCTTTCCAATTTTTCTAAGGATAGTGATTCCAAAAGCGTTGAAAATGAAAAACTCATTTTTAGTTTAGTAAAGGAAGATCGAAAAAGACCCAGACCCAGACCCAAGAAGAAGCCTAAAGAAGCTAAAAGGGTGCATAAAAGCAATGGAAAGCGGCTTAAAACAGTCTCATTTGATGATGATGCGGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTAGAAACTGAAAGGGATGAGTTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGTATTCAACAACCTGAAGCATCAACTAGTCGTAATGCGACTGAGCAAGAAAATATTGGTGATCTTGCTTCGGCCAGTGTCGAAAGAGCTGCCAGATCATTTTCTGAGGCTGCAAGAGCTCGCCCAACCACCAAGCTGCTTGAGTCTGAGGATGTTCCAAAACTTGATGCACCTACTATTCCTTTTCGCAGGCTTAAGAAACCACTAAAGTTACCCAAACCTCATGACAGTGAGGTGAATAAAGATTCAAAAAGGAAAAAGGGACGACCTTTGCCTGGTAGGAAATGGACCAAGCGTGTTACTAGCGAGGATAGACAACTAGAAGAAAGTGACAATGTAAATGGCTGCTTGGACACTTCCAGTCATGGGAGTTTAGAAGTACAAGATGCTGACCTTCCTGAACACGAATCTTCTTACACAACATTAGAAGGTGGGCTAAAAATCCCTGATAGCATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATCGGTGATGAGATGGGTCTTGGTAAAACTATACAGGTATTATCATTTTTGGGTGCATTGCATTTTAGTGGCTTGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCGAAATTCCATGTAGAACTTTTACATGATTCTGCTCAGGATTGTTCTTCCAAAAAGAAGCAAGCTGAATCCGATGAAACAGACTATGAAAGCAATAGTTCAAGTGACAATGATTATGAGAGAAGTGCCCCATCTAGAAACACAAGAAAATGGGAAACCCTCATAAATCGTGTCATGAGATCAGAATCTGGATTGCTTATCACCACATATGAGCAGCTCAGGATATTAGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAGGGGCATAGAATAAGGAATCCAAATGCCGAAATTACCCTAGTTTGCAAACAGCTACAAACTGTACACCGCATCATAATGACTGGTGCACCAATTCAGAACAAACTGACTGAATTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTACCTGTATTTGAAGCTGAATTTTCAGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCGTTACAAGTATCCACAGCATACAGGTGTGCTGTCGTGCTACGTGATTTAATTATGCCTTATCTTCTCCGACGCATGAAGGCTGACGTAAATGCCCAACTTACAAAGAAAACGGAGCATGTCCTATTTTGCAGCCTTACATTAGAGCAAGTATCTGCTTATAGAGCGTTTTTAGCAAGCACTGAAGTAGAGGAAATATTTGATGGACAGAGGAATTCACTTTTTGGAATTGATGTGATGCGCAAGATATGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTTCAGTAATCCAGATTATGGAAATCCAGAACGAAGTGGTAAAATGAAAGTTGTAGCTCAAGTGCTGAATGTTTGGAAGGAGCAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATTTTTGACTACTGCTGGTCATCTTTACCGGAGAATGGATGGCCTCACTCCTATAAAACAAAGAATGGCTATAATGGATGAATTTAATGACTCAAGTGAGATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAAGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGACGTGACAGTGTATAGGTTGATCACACGTGGAACAATAGAGGAAAAGGTTTATCACCGCCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCGTACTGAATGTGGATGGAGAAACTGGATCAACAGAAACGTCAAATATTTTCAGTCAAATATCTGAAGATGTCAATATCATTGGGACACACAAAGATAATCAGGATAAGGATAAATATAGTCAAACTGCTGAACTGGGTTCTGAAGATGCTGCTGTTGGTAATGATGGCAAATCAAGGAGAGGATCTTTAGGGGGAAAAGGAAAAGAGAAGGTTGAGCATAGTAATGGGGTTGACGAGGAAACAAATATATTGAGAAGTCTTTTTGATGCCAATGGGATACATAGTGCCATGAATCATGATTTGATCATGGATGCCCATGGTGAGGAGAAGATGAGACTGGAGGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTTCGAAGCCATGATAGCATCTCTGTTCCGACATGGACAGGAAGGTCAGGAACTGCTGGCGCACCTTCATCTGTTCGGCAGAAGTTTGGTTCGACTGTGAGTCACCAGTTGCTAAATAAGAGTAAAGCACCTGATGAATTACCTTGCAACAGATCTAAGAAATTTAATGGATATGCTGCTGGGGCATCTTCTGGTAAGGCATTATCTTCCGCTGAACTATTAGCCAAAATTCGAGGTAACCAAGAACAAGCCATCAGTGCTGGGCTTGAGCATCAGATTGGTACGTTGTCAAGTTCCAATAATCAATCAAGATCTGTAGATGTGAGATCTTCCAGGGCTACTGAAAATTCATCTGAATTTCAACCTGAAGTAATGATTCGGAAAATTTGTACCTTTCTACAACAGCAACGTGGTAGTTCTAGTTCGTCCAGCATAGTGCAGCATTTCAAGGACAGGATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTACAGAAAAGATCAAATGGATCTTATTGGGTTCTGAAGCCAGATTATCAAGAATAA

Protein:

>Am02G016860.1
MEEEQDRILLTSLGVKSANPEDIERHVLEKATRNDAVSVTEVEGDNDEEECPRLPEIVDPSSIAKAELLQKLRAVAFEIDAVSSTIQRSRNIQNDGECADDGEDNSEEGIAEGDTSGGSNLQHVLAVDRLRSLKNTKAQLEKELSNFSKDSDSKSVENEKLIFSLVKEDRKRPRPRPKKKPKEAKRVHKSNGKRLKTVSFDDDADFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRIQQPEASTSRNATEQENIGDLASASVERAARSFSEAARARPTTKLLESEDVPKLDAPTIPFRRLKKPLKLPKPHDSEVNKDSKRKKGRPLPGRKWTKRVTSEDRQLEESDNVNGCLDTSSHGSLEVQDADLPEHESSYTTLEGGLKIPDSIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGLYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDCSSKKKQAESDETDYESNSSSDNDYERSAPSRNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLTKKTEHVLFCSLTLEQVSAYRAFLASTEVEEIFDGQRNSLFGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKFLTTAGHLYRRMDGLTPIKQRMAIMDEFNDSSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNIIGTHKDNQDKDKYSQTAELGSEDAAVGNDGKSRRGSLGGKGKEKVEHSNGVDEETNILRSLFDANGIHSAMNHDLIMDAHGEEKMRLEEQASQVAQRAAEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVRQKFGSTVSHQLLNKSKAPDELPCNRSKKFNGYAAGASSGKALSSAELLAKIRGNQEQAISAGLEHQIGTLSSSNNQSRSVDVRSSRATENSSEFQPEVMIRKICTFLQQQRGSSSSSSIVQHFKDRIPSKDLALFKNLLKEIATLQKRSNGSYWVLKPDYQE*

Promoter(3k):

>AM02G016860.1
TTTTGCCGAATAATATATCTTAATTTTTTATTCGGATAAAATTACCATTATATTTGATGACTTTGACATCACCATGTGAATTTTTGTGTCAAAAACTTTATACGTTAAATTATTATCCACTCAATTTTAATTACTAACTAAGTGAATACCTTATCAAATAAATGGATAGTCCGCTAAAATAGATTGTGGATAATATATATATACATTTCTCTTTAACACGTGGATATTTTACTCTTCCATGTTTAATGACATGAGAGTCTTTTAGTGCATACTCTAATGGTAAGAATTGTCCTATATATTTTTGAATTCATTCTTCAGTTAATATTTACACTCCAAAGTAATGTTTTTTTTAAACATTCTTTGGCGCTTTTGATTTTATGATTGAGTTCTTTGTATGACGATTAAATATATGATGATGAGCTTTACACTAGCAATTTCAATTAAAGAGATTGTAAGTAAGTTTTCTTCATCTTTCATGTCTATTACAATGTATATAAGGTATGGATTAATATTGCTTTGGGTTCCATTTTGTATTTAAATTTTATTCTCTTTCCGATTATAATGTAATGTTTTCTTATTGTATCCAAATGAGATTCCACAATGCTTCTCAAGGTTTTTATGTATTAAAATATTTACTTATAATTTAAACATAAAGAAGGTTTTAGTTTTAATGGAGACACATAACTGCCACTAACGTATTGACATAAACAATGTTTTAATTTTAATGGAGACACATAATTGAGTGAAAATATAGAGGTTGATAATAAAAACTAACAATATAGTTACGTATAATATAATATCATCTGTAAACAAGTTTCTATATTTTGATAAATTATGTCTACTTATTGAAAGATTACAGTTTCAAATTAGTATAAATTATTTCATTAATTATCAATAAACGAATGAGTCAGTATAATATGAGTGAAAGAGGTAGAGATTTAATTAATTCATCATATATTTAAATAATTTTTTATTAACTATTGTATTTTATTTTTATATTTAAGTTATGTATTTGTTTCTTTTTTAATAAATTATTCATACATTTCTTTAACTTATATTTCATAAGTTTATATATGTGCTTTTATATTTATTGTAATTATATAAAATAACTTCAACATATTATATTGACATATAATTTAATCAAATTTTATTGAACTAAGAAATAATGAGTGGGCCTTTGAATTTTTTTTTTGGAGTAAGTGTTATGTAATGAGAGTGGAGAGTTTCACATTAATGTGATTCATTTCTTAGTTTCCATAAATTCATGAGTTAGTAAAATATAAGTTGAAAATGTATAGTTTTAATCGGTTATAATATATAAGACACAACTATTTATAGAAGAAAATTTTAGATGGTGTGGGGAGAGATTTTGGTGGAAAGTTTAGAACAAAAAATGGGATGTGCAAGTGAGCATTAGAAAAGAGTGGTCACTCGAGAAGATGTAGAGTGCGCGGAGAGAAATGTTAGAGTGTGCAGTCAAGAGAGTGAAAGTCACGTTACATGCATAGGAAGATAAAAAAGGAATCTCTAGCATATTGGACCTAAGTTTCAACTTTTGATAGGTTATTTTCAATTGTAATTGTCATTGTTCTTCTACAAGCATTTGTGTCTCTCTTAGTTTCAATCGAAGCATTTTTCTAATTTTCAACTTCTAGGTACCTTTATTCTCTGGAGTATTAAAAATAATTTTGGCCTCATGGATATATTCCTCAAATTATTGTGCTGAATTTTTTGTGGTACCTTTTTTATGTTGCCTACCATCAATACCCTCTATACCTCAAAGGTGGAACATTTCTTAAACCTTCTCTCTAAATCTGGGTTGTAATGAATCTTAGGAATTATGTGCTAATTTTTCAATTCATTTTAAGAGTTCATTTCCTTACTTAAATTTTTTATATGATTTTTTTATTTGAGAATTCACAATGAGTGTAAGTTGTCTCTTTATTGCGGAAATGAATAATATATTCAAATAAAATATTAAAGTTGTTATATAAAAACATTACATACTAATTATAATTTTCCCTCAAAAATACTAATTATCATTTAAGAAAAATGCTTCAAATATATTAAAAATGAACTATACATAATAAATATTCCAATTGAATATAAAACGTTGTGATATTTATTAAATTTTTACTGATTTTTTATTTTATGTTTTGAACAAATTTTGTTATCAAGTCTTTGTTTATCTTCTCTTCCACTTTGACTTAAATTTATTATTAATTCAATATTTAAGTAATATTTAACTAATTTATATAATTATTTAACAATAAAAGTGACTAAAACTATAATATTCTTGAGAATCGCTACAACAAAGTTATGTCTGAACTTTTATGCATGTATTTAAATTATATCACATTTACATATTTTTAGAAAATTTATATAAAATATAAATAACATGAAAATATAATGAAAAATATAGTACCACTATAATAAAACATATAAATATATAGATATATATTCCATAAATTTATATAAGAGATATTATAATTTATGTATTTTTATATGTTTAAACTTCATAAAATTTAAGAAAAAAATATTTTAATAACCCGTGCAACGCACGGGCATTCCGCTAGTTTACTAGTAAAAGAAAGATTAAGTGAAGAAATTGATTAAACAAAGTTTATTATATATATAAAAAATTAATTACAGGCGGAGACCAAAAAAAAAACTATCTTGGTTCCGACGGTCCTGACTCCTGGCGAAACGACACACATAGCTAGGGCATTGAACCATAGGGAAGAAGCTAGGTGACCAAGTACTTCCACCGGATTAGAGGGACGACGACGGAGATAACACCTCCTCTCCTCTCCTCTCCTCTCCTCTCTGGGAAACAATAATCAAATAACCTTCCTTCCTTTGATTTCAAAATCGATTAGCAAAACTAAATGCCGTTGAATTCCGCCGAAAACAATCAACATTATTATCTGTTTTGCCGGTTAGGTTTTGTACTCCCTCTACACCATGATATCCAGAAGTCGTTAATGTGACGATAATTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	401	723	4.00E-66
PF00271.34	Helicase_C	748	855	6.90E-19

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR8
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0006283	transcription-coupled nucleotide-excision repair	Biological Process
GO:0004386	helicase activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0004674	protein serine/threonine kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A1S2XX81	_

SwissProt

SwissProt term	Description
CHR8_ARATH	Protein CHROMATIN REMODELING 8

KEGG

KO	Description	Enzyme
K10841	DNA excision repair protein ERCC-6

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G18760	chromatin remodeling 8
Medicago sativa L.	MsG0180003810.01.T01	_
Oryza sativa L.	ChrUn.fgenesh.mRNA.85	expressed protein
Cucumis sativus L.	Csa001101	_
Glycyrrhiza uralensis Fisch.	Glyur000248s00011309.1	_
Codonopsis lanceolata	Cl_chr06_36230T	_
Arachis hypogaea L.	AH12G10700.1	Protein CHROMATIN REMODELING 8 like

Expression pattern