Gene detail

Detail information of Am02G015910.1 Annotation

Gene ID	Annotation
Am02G015910.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G015910.1	mRNA	Chr02	125153803	125156189	-

Sequences

CDS:

>Am02G015910.1
ATGCAGTGGCGCTTAGCGTTCAATTTCAAACACAATTTGGCCGCCAACGGGAACCTGCGTCAGAACCTCCTTAAAACCCACGGCGGGATCAACTTTGCCGCCTATGGCTCAGCCATTCAATTATGCGCCGACCGCCGCCTCGTCCGCCAAGGAAAGCAGCTCCATGCGCGTCTTTTCCTGCTCTCCGTTACACCCGAAAACTTCCTCGCCTCAAAACTCATCACCTTGTACTCCAAATCCAACCTCCCACGCGAAGCGCGAAAAGTTTTCGACGCGATTCCCCGAAAAAGCACGTTCTCCTGGAACGCCATGCTCATCGCCTACTCCTCTAACGGCCTGTTCCTTGACCTTCTCAATCTCTTCGCGTCGTTCGCCTCTTCCGCCGAGAGCAGCGTCTCTCCCGATAACTTCACAGTAACCTGCGTTTTGAAGGCGCTAGCTTCGTCATCTTCGAGCCCTAAAGCGATTCACTGTTTTGTTCTTCAACGTGGGTTCGATTCGGATGTTTTCGTTCTCAACGCGTTGGTTACGTGTTATTGCAGATGCGATGAGATCAAGATGGCGAGGAAGGTGTTCGACGAAATGTCTGAGAGAGATATCGTAACGTGGAACTCGATGATTGGCGGGTATTCGCAGAGTGGGTTCTACGAAGAGTGTAAGAGGTTGTATTTGGAGATGTTGAGTGTGGCAGGGGTTTCACCCAATGCGGTCACGATCGTGAGCGTGATGCAAGCGTGTGGACAGTCAAAGGATCTTTCGTTTGGAATGAAAGTTCATAGTTTGGTTAATGAGAAGGGAATTGAAGTGGATGTCTTGCTTCGCAATGCTGTGATTGCTATGTATGCTAAATGTGGTAGTTTGGATTATGCTCGTGAGTTGTTTGAGGAAATGAGTGAGAAGGACGAGGTCAGTTACGGGTCTATTATCTCCGGGTATATGGTTTATGGTTTTGTAGATAAGGCCTTGGATGTTTTCAAGGGAATGGTAGACCCTGGTTTAAGTACTTGGAATGCTGTGATTTCTGGTATGGTTCAGAATGGCCATTTTGAAGGAGTGTTTGATTTAGTTAGAAAAATGCAGGGGTTTGGTTTGAAACCAAATGCTGTCACACTTGCCAGCATTCTTTCTTTGTTTTCGAATTTCTCAAACCTCAGAGGGGGGAAAGAGGTGCATGCTTATGCCATTAGAAGAAGTTATGACCAAAGTTTTTATGTGGCAACTGCAATTATTGATACTTATGCTAAGTTGGGGTTTATTCACGGGGCAAGGTGGGTTTTTGATCAAGCACGGAGTAGGAGCTTAATAATTTGGACGGCAATTATATCAGCTTATGCTGCTCATGGAGATGCTAGTTTGGCACTTGGTCTCTATGCTCAGATGATAGATAGAGGAATTCAACCTGATCCGGTGACATTAACATCTGTGTTGACGGCTTGTGCACATTCTGGGCGAGTGGATGAGGCATGGGGTATCTTCAATGCAATGCCTTCGAAATTTGGGATTAAACCCTTGGTGGAGCACTATGCCTGCATGGTGGGTGTTCTTGGTCGAGCTGGAAAGCTCTTGGAGGCAGCGAAGCTCATTTCTGAAATGCCAATTGAGCCTAGTGCTAAAGTTTGGGGTGCGCTGTTGCATGGGGCTTCTGTTTATGGTGATGTCGAAATGGGGAAGTTCGCTTGTGATCATTTGTTTGAGATTGAGCCAGAAAATACTGGGAGTTACATAATTATGGCAAATTTGTATTCGTGTGCTGGGAGATGGGAAGAAGCTGGTAAGGTTAGGGAAAAGATAAAAGAAATCGGGTTGCATAAGATCCGAGGAAGTAGCTGGATTGAAATGAGTGGAAGGTTAATAGGCTTTATTGCCAAGGATTTGTCAAATGAAATATCCGATGAGATTTATGCATTGCTGGAAGGATTGCTTGGTTTGATGATGGAAGAAGGATATATCTTGCAGGAAGAGTTAGATTATGAGATGTGA

Protein:

Promoter(3k):

>AM02G015910.1
GTCTTGCTTTGGGAGCAATGATTCAACGCACGTGGACACATTTAGACGTTGGAGCGGTTAAGAAAACGTGGAGAAGCGCCGTAGAAGTGGAAGCGAAGATATTTTCACCCACTACCCGTGCTAGTGGAAGAGTGCTTCCTAGTTTTTAGGGCTTGGATGTAATGTAGTGCATTGATCTTGATTAATCCAACGGTAGGCAAGTGTTGGCTCGAGTAGTGGCCGACGATGGCCTATGTATATAAATAGGAGAAGAGTAATTGTACAGAACACACACACCAATCAATCGAAAACTCTACGTTTATTTTATCTATCTGCTTTTATCGCACTTTATCTTTATTTTCATGCATTAGCCAGTAGTATAATCCAACCCTTGCGTCTCATTCACTATACCTGGCCCTTTCTAGAGGGGTCAGGATACCCACAGTCAAGGAGCACGGTTCCCTCCTTGGCGCAATTGCTTGAAGAACAGAGGAATCAAAAGCCATCCCAGACCTCTGGCCGAATCCACGGCCAGGACCTAAAAGTTTGACGAAGAACAACAGTATCCTCCATATTTAAGAGTAAAAACCTTTGTAACCTTTTTAGTATCATAATAACTTTTCGGCAAAACTCCTCTAATAGGGGTTGCATCAATATCATTTTAGTCATGTATTCCATGCACAATTCCGCAACATTAAAATGAGACTTCAGACTCAATAACCGAACACATATTGATAATTTAGAGCTTTAGACCCTTCAAATAATGGTTATTTTTCTCGCACAAATGAGTATAAAATCTCTGAGCTTCCTCGTTTGACACTTCTTCAGTATCCTATCGTTGATCTTCAAAAGACAAATTTGCTTCGACTGTGTCAGATATCATCCCTAGCGCAACGTCAAACAGTTGATATCTCGTATACATTGGAAAACTACTTGATGTAGTAGCCTCTACTTGATGTAGCGCAACGTCAAACAGTTGCTATTAGGTGCTACCTCACCATGATGGGTCCATATCCAATAATTTGGCTTAAACTCATTATGGTACAAATCAAAGCCGACTTCTTCTTCATTATTTATATGTCGAAACTTACATATTGTGCACAGACATCTAATTCCACCTCGTAACTCAAATTCTTTTTGACGCTTAAAAAAAAGAACAAACTCTTCGACTCCTTCTTCAAAACATCGCTTCATACCAGCTCTTTCAGGATAATGTCGATCATACATTCAACTACGATCCATTTTTTTTTGATATAATACTACATTAATTATATATATATATATATATATATATATATAAACTCACACGCGTAAAGTGAAGATCTCAACTTTGAACTCCAATAACAACAACAGAAAATATCTAACCTAACATCCAATTATACTAGCCTTTATAGATGGATCTTAAATATTTACAAGCGAGTGCTTACGAGAGAGATTTTTGTTTTTGGAAGATTTCTCAAAATATTAGATTATTATCTATATCTATGTTTCTTTGTTTGGTCAAATAAAAATCTATGTTTCTAGAAGAATGGCCGATCTAAATAATGGCCAATCTGCCGGGTGTGGTGGGATTCTTCAAGGATCCAGGGGTGAATACCTTTTTGTTTTCTCTCACCAGTTGACTACTTGCTCAGTTCTGGAAGCTGAGATTCTTGAAATCTATCATGGAGTTAGAATGGTGTGGAACACAGGTTACTCGAAGCTGGTAATTGAGTCTGACTCTACGGAGGCGATCGATCTTCTTAGTGGTGGGAGAGCTCCCAAACACCGCCTTCAACTTCTGCTCGACGGAATTTTTGAGCTGGGTGAACATAGCATTCAATTGGACTGGAGTGTGGTCGGAAGGACTCTGTTGCGGATAGGCTAGTCAAAGAAAGCCACCTTATTAGTGGCAGTTATGTAATTTATGATACTGTTCCAGACTTTTTAGTCATTTTGGTAGCTGATGATGGGTATGGGCCTGCTAGTCCAATTCTAATGGAATAGTTTCTCTCGGCCTTGGGCCTTGTGTTTCACCAAAAAAAAAAGAGAGAACGAGTGGAAATGAAAATCTACTATCTATCTATACCATTAACCTACTAACAAAATATCAATCTTACCTTTTTTCCAACTAAACAATTTTAGGATATTGATGTAATTTCACTTTTTCAAACTTTTTCACTCTCTCATATATTTTTTCAAACTTTTTTACTCTCTCACAGTTTTTTCAAACTTTTTCACTTTTTCACTCTCTCATATATTTTTTCAAACCTTTTCACTCTTTCTCACACATTTTTTCACTCCCTCATCCTCTTTCTTTCTCTAACTCTATCTCATTTTTTTATTTTTCACAATATATCTACTTTAATTTCATCTACATGTCTCCTTTATTATTTTAATATTCTTTCTCTATCAATAAGTTTTATTTAGTCTCTACGGGAAATATTACAATTTGTAAAATTTGAAACTTTATTACAATTTTTGTTTTCTAATCTCTACAAGAAATATTACTTATCACACACTCTCTCATATATTTTTTCAAACTTTTTCAATCTTTCTCACATTTTTTCACTCTCTCCTCCTCTCTCTTCCTCTAACTCTATCTCATTTTTCTATTTCTCACAATATATCTACTTTAATTTCATCTACATGTCTCATTCATTTTTAATATTCCATTTTTTTTCTATTAATAAGTTTTATTTAGTCTCGGGAAATATTACAATTTGGAAAATTTGAAACTTTAATACAATTTTGTTTTCTAATCTCTACAGGAAATATTACATATTGCTGGTAAATATTGACGGAGTAATGCTCAGACTAACTCAATTACAATGTGAAACTTTTTCTTTATCTACTTTAAATTAGTCTTAATTTTTACGAAATAATATTCAAACTAATTAAATTATTTCTAAGTCTATTAATAAAAATAACATGGCATTACCGTGCGCACCTAAGGAGACAGGTATACTCCTAGTTAAGAATAAGGGAAGGGGAGTAAAGGACTTAGAAAACCTGAAAACGATGATTGAATGAGGATTCATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	201	228	9.10E-71
PF13041.9	PPR_2	199	246	1.80E-64
PF13041.9	PPR_2	332	375	1.80E-64
PF13041.9	PPR_2	435	480	1.80E-64
PF20431.1	E_motif	550	612	1.70E-18

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009451	RNA modification	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif

trEMBL

trEMBL term	Description
A0A1S2Y0Q5	_

SwissProt

SwissProt term	Description
PP191_ARATH	Pentatricopeptide repeat-containing protein At2g37310

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G37310	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0180003635.01.T01	_
Oryza sativa L.	LOC_Os03g17510.1	pentatricopeptide, putative, expressed
Cucumis sativus L.	Csa005008	_
Glycyrrhiza uralensis Fisch.	Glyur000976s00028347.1	_
Codonopsis lanceolata	Cl_chr06_28490T	_
Arachis hypogaea L.	AH07G03210.5	Pentatricopeptide repeat-containing protein At2g37310 like

Expression pattern