| Gene ID | Annotation |
|---|---|
| Am02G015390.1 | Transducin/WD40 repeat-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G015390.1 | mRNA | Chr02 | 123036254 | 123038765 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00400.35 | WD40 | 20 | 56 | 1.80E-57 |
| PF00400.35 | WD40 | 62 | 98 | 1.80E-57 |
| PF00400.35 | WD40 | 102 | 140 | 1.80E-57 |
| PF00400.35 | WD40 | 144 | 182 | 1.80E-57 |
| PF20426.1 | NBCH_WD40 | 76 | 145 | 4.50E-22 |
| PF20426.1 | NBCH_WD40 | 145 | 301 | 4.50E-22 |
| PF08662.14 | eIF2A | 71 | 170 | 1.20E-11 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | DWD |
| Epigenetic Regulators | SWDC1 |
| GO term | Description | Category |
|---|---|---|
| GO:0000118 | histone deacetylase complex | Cellular Component |
| GO:0005669 | transcription factor TFIID complex | Cellular Component |
| GO:0045892 | negative regulation of DNA-templated transcription | Biological Process |
| GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process |
| GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process |
| InterPro term | Description |
|---|---|
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR019775 | WD40 repeat, conserved site |
| IPR001680 | WD40 repeat |
| IPR020472 | G-protein beta WD-40 repeat |
| trEMBL term | Description |
|---|---|
| A0A834WD96 | _ |
| SwissProt term | Description |
|---|---|
| WDR5B_ARATH | COMPASS-like H3K4 histone methylase component WDR5B |
| KO | Description | Enzyme |
|---|---|---|
| K14963 | COMPASS component SWD3 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G02730 | Transducin/WD40 repeat-like superfamily protein |
| Medicago sativa L. | MsG0180003978.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g38430.1 | WD domain, G-beta repeat domain containing protein, expressed |
| Cucumis sativus L. | Csa016694 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000348s00020041.1 | _ |
| Codonopsis lanceolata | Cl_chr06_41820T | _ |
| Arachis hypogaea L. | AH02G06750.2 | COMPASS-like H3K4 histone methylase component WDR5B like |