Gene detail

Detail information of Am02G013940.1 Annotation

Gene ID	Annotation
Am02G013940.1	Calcium-binding EF-hand family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G013940.1	mRNA	Chr02	115809958	115818684	+

Sequences

CDS:

>Am02G013940.1
ATGGATGTGGAGGAAAATGGGAAGTTGGTGTCTCTGGACACAGATATGTTGCAGCTTCCTGAGGTTTCTCCTTTTGCACTGAAATCGAGTCCTTATGTTGCAGATGAGCTATTCTCACAGTGGCTTTCACTTCCAGATACTTGTCGCCTGGTTAAGTCATTGCTTGCTGATGCAAAGGCTGGAGCTCCATTGGGTGCGCTTGAGAACTCAGCAAATACAAATGCTCTTTCAAGCAACTTATTACCTTCCTTGTTTGCTGCTGGCAGTACACCACCACTTTCACCACGCAGTTCATCTGGTTCCCCTCGTACCATGAAACAGAGAACTAGCCCTTCTTCATTACGTTCTCCACTAAAAGTAATTAGTGAACCTGTAAGGGAGATCATTCCTCAGTTCTATTTCAAAAATGGCCCTCCACCACCAAACGAAAAGAAAGAGCATTTCCTGTTTCAAATCAATAACCGATTTTATGGCCATTTAGATGGCCTGCAATTACATGAGTTTAAGTCTGTTACGAAAGAGATATGCAAACTTCCCTCGTTTTTCTCCACTTCTCTTTTCAAAAAGATTGATGTCAATTTTACAGGAACCATAACAAGGGATCAATTTATTGACTATTGGATTCGAGGCAACATGTTAGCTATGGATTTACCCACACAAATATATACAATACTGAAGCAGCCACATCGAACATACCTTGTACAGGATGATTTCAAACCTATCTTAAGGGAACTATTGTCCACTCATCCTGGATTGGAGTTTTTGCAAAGCACGCCTGAATTTCAGGAAAGATATGCTGAGACTGTCATACATAGAATATTTTACTACACAAATAGATCAGGAAATGGACGACTTACCCTGAGGGAGTTGAAACGTGGGAATCTAATTGATGCAATGCAGCATTTAGATGAAGAAGAGGACATTAACAAAGTTCTGAGGTACTTCTCATATGAGCATTTTTATGTCATTTACTGCAAGTTTTGGGAGCTCGACACAGATCACGACTTTTTCATTGACAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACATATCGGATTGTTGATAGAATTTTTTCCCAGGTTCCACAGAAATTTACGAGTAAAGTTGAAGGGAAGATGAATTATGAAGATTTTGTTCATTTTATACTAGCAGAGGAAGATAAGTCATCTGAACCTAGTCTGGAATACTGGTTCAGATGCATTGATTTGGATGGAAATGGAGTGCTGACACCAAATGAAATGCTGTTCTTTTACGAGGAACAGTTGCATCGGATGGAATGTATGGCCCAAGAGCCTGTGATTTTCGAAGATATATTATGTCAGATTGTTGATATGATTGGGCCAGAGAATGAGGGTTATATCACATTACGAGACGTGAAAAGCAGCAAACTTTCGGGAAATGTCTTCAATATTCTTTTCAATCTCAACAAGTTTATTGCTTTTGAGAGTCGCGATCCGTTTCTCATACGTCAGGAACGCGAGGATCCAAATTTGACAGAGTGGGACCGTTTTGCGCACAGAGAGTATATTAGGCTTTCTATGGAGGAAGATGGTGAAGACATGTCAAATGCCAGTGGAGATGTCTGGGAAGAATCACTTGAGGCCCCATTCTGA

Protein:

Promoter(3k):

>AM02G013940.1
TCAAAATAAGCTCTATCCAAACGGGCCCAATATACATATATATATATTTATAATAATCCTTTAAGTTATCTTGTGCTTTAATGCCCATGTGCTTTATTTCGCCATCAGTTCTACAGGCCATATGGAACAAAGCTTTTGTCAACCAAATATTTGTATGCCTATATTTCAGGTGGACCAGAGATTCGGGATAGATACTCAGGAGCAGTCGAGGCATTTGCAAGAAGGAATGGCTCTGGGCTTGGTCTGCATGGTGATCATTCCAGGCATAATAGGTCTTCAGATGATGTGCCATCTTCCAAAGAAGTGGTTAGTACACGTGCCATCATTTTGTGTGCATGATTTGGTGATTTTCAAACTTCATTAGGAGATAAGTGGACTGCTTGTTACCCAATATACTGAGTTTTTTTTTGCAGCATGCTAATTCTGAGAGGCCTCGAAGTTCTTCTCGTAATGGCAGTTCTTCAAAAAAGCCTGTTTTATCAAGCAGTCGACCAAGCTCTTCTGGTGAGCCGAGTGAAAATCGCTCCCATCGACTGGTCTTGAGCAGTAGCAGACTATCTACTACTCAGAGAACTCAATCAGGTTTGGAGTCAAAAACATCATTTACTCGCGCGTCTGGGACTAGAGGTGGTCGTGACGATACCCTCCGGAGCTTTGAACTCCTGTCTATTGGCACAGGAAAAAGGAAATGAAGAAATATGTGTTCGGTAGACTTTGTGTTTTAGTCTGCTCTGATAATTTTCCTTTGAGATGTCTACCCTTGTTTGATTACTCTGTAAATTTCCTTCCAATGATTCATTCAAGTCTACTCCATCTTTATTCCCCCCTTTTTTTTAATTTTGAAGACTACAGATCAATAGTGAGATTCTGATGCTATGCCTTCTTATAGCTCTTCTTCTAATGTTCTTCCATGAATATTTCAGCATGGATACATTCGTGAAGAGATACTATGTTACTTTAGGAATTTGTTAATATATGGCTGGCTCTACTTGTAATAATGAATACATCCACTATTTTTCTACTGAAGAGAAGAAAAAGAAAACTGCAAAAATGCTTCTCAAGTTTTGCACCCTTTTAATGGATGATGTTTCGTATTATGTTTTAATGTACATTGATGGAATGGAATTGTTGGCTCTAGTTATGGATTAAGCCAGTTTGACTTTTCTTTCTAAATGGCGCCGGTTTGACTTTAATGACTTAAAGCATTGCATAGTGATTATTGCCTCTTGTAAACTTCTTTTTTACTTGGCAGGTCTACTCTTGTAAATTTAGTAGTTAGTACAGATAAATTTATGATCTGATTACTATCATTAATTAGGAGATCTATGTTTAATAAGAAATTGGGTGATCGATAGTTTATTTTCTTAAAATCCTTTTCTAAATCCTAAAGTGTGTCTAGACGCTTGTGCAACATTTCAATCAGAAATTAGGAGATCTATATTTCGGAGAAAGGAGGAATGACACTTTTGGTCTGCTTGATAGGATATTTTGTCGTTAAATTTGGTGCTTTTATTGTGATTGATTATATAATAATTTAATTTAGGTAATAAAATTATGTGGCCGGGGTATAGTTTTTTATCTATTAGATGAAATGATAAATAAACACCATACACATATTACCATTGCTCATACTTGGGTTCGAACTTGGGAGCTGACTTTCTCATGTCATTGAAATTGCCAAGGCAACCATTAGTCATTTTGGTCTCTGGAAGTGTAACTCGCTGACAATTTGGTCCCTCATTCGAGCGAAAATGCAAAAAGGTCCCTCAATGTGTAATCTGTCCGTCACGTTAGTCTTTTCCGTTAATGTGTTTCGTTAACTCCGTCAATGTGGCACGTTTATCTTATTTTAGTCATTGAAAGATGTCACTTACTGTTATTTTAGTCCCTGAAAGATGTCACTTACTGTCATTTTAGTCTCTTAAAACTATTTTTTTCTCTTAAAACTCCTATGTTTTAGGGACTAAAATGACAGTAAATGACATTTTTCAGGGACTAAAATGAGATAAACGTGCCACATTGACGGAGTTAACGAAGTACATTAACGGGAGGGACTAACGTGACAGACGGATTACACATTGAGGGACATTTTTGCATTTTTGCTCGAATGAAGGACCAAATTGACAGCGAGTTACACTTCCATAGACCAAAATGGCTATTAACCCTTGGTGAAGGTAGTGAGGGTCATAGGTGTATAGTTTTTAAACTACTTAAAACTGTTATTTAACCATGTAAAATCAAAATGAAAATTTTAAAATAATTATTTTCATATCATTTTACAAATAATCACATGATTCTCCATTTTCAGTTCACAAAAAACACAATAAAATATAATAAAAAACAGACCAAATCAAACACCAAAAAACTGTTTATTTTAATTTTCATTTTTCCCACCTATTAAAAATTCAAAATTATTCCTCAAAGTAAAGAATTTTTTTTGAATTAGTTAGCATTGCTTATTGCAATCACTCATTCACTCGACACCATAGAGAACAGATAAGTAAAATTCTCTACTGTTCTTGTGTTTTCTCTTTCATCGCCACCATTTTCATTACCTCTTTCTCATTTCTTTTTCAAAAAAACTCGAAACCAAACACGGGTTTTTTTTTTCTTTTTTTTTTCTCTTTATTTTTTTATCTCACTTTCTCATCAATTATTTCACACTCGAATTTTCTCGTCCAACTCTAATTTTCCCCAAAACCATTGTTTCTCGCGTGGTTTGAAATTCCCTTGAATTTCCAATTCTGGGTCGTGTTCGCTTTTCTTCAAGGACCCTTTGGGTTCTTCTTCTCTCGTAGTTCGTGGATACCCATGATTGTTTATGGCTGAAAGTTGCTAACTTGGTAACTGGGTTTTGCTCACCCAAGTGGTGGAAGAAGGATAGGGGGAAGAATCACAGTGATTATTGAAGAAGTGAGGTTTAGGGTTTTGGTGTAGCTGTGAATTTTTGTGTGATTGAATTAGGGTTGTTAAGTGTATGAGAGGGAGAATTGAGTTGTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF17958.4	EF-hand_13	219	305	8.30E-34
PF13499.9	EF-hand_7	320	420	2.10E-23

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0000159	protein phosphatase type 2A complex	Cellular Component
GO:0019888	protein phosphatase regulator activity	Molecular Function
GO:0005525	GTP binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0003824	catalytic activity	Molecular Function

InterPro

InterPro term	Description
IPR041534	PP2A regulatory subunit B'', EF-hand domain
IPR011992	EF-hand domain pair
IPR002048	EF-hand domain
IPR018247	EF-Hand 1, calcium-binding site

trEMBL

trEMBL term	Description
A0AAN9QQG3	_

SwissProt

SwissProt term	Description
2AB2B_ARATH	Serine/threonine protein phosphatase 2A regulatory subunit B''beta

KEGG

KO	Description	Enzyme
K11583	serine/threonine-protein phosphatase 2A regulatory subunit B''

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G28850	Calcium-binding EF-hand family protein
Medicago sativa L.	MsG0280007300.01.T02	_
Oryza sativa L.	LOC_Os10g33680.1	serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed
Cucumis sativus L.	Csa012270	_
Glycyrrhiza uralensis Fisch.	Glyur000557s00018792.1	_
Codonopsis lanceolata	Cl_chr07_18040T	_
Arachis hypogaea L.	AH09G20530.1	Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma like

Expression pattern