Gene detail

Detail information of Am02G012770.1 Annotation

Gene ID	Annotation
Am02G012770.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G012770.1	mRNA	Chr02	108373667	108376016	+

Sequences

CDS:

>Am02G012770.1
ATGTCATCATCTATGAATTTGGCATTTCTTCGAAGTCAAACTCGAAGAGTGTGTGATGGGAGTCAATGGCAACAATGGACAGAACTACTACTCTCCAAATGCACCAATCTAACCCACCTAGAACAAACCCACTCCTTGATGCTAACAAGAGCACTCGACCAAGACGATATTCTCCTTTCCCAATTAATCCACACTTCCACCACTCTCAATTTCCCCTCTTACGCTTATTCCCTTTTCACTTTCCACCAAAACCACCGTCCTCTAACCATCTTCGTCTACACAAACACCATCCACGCTCTTTCCTCTTCCAATCCAACACGTGCTATTTATCTTTTCAATTCCCTTCGTTTCCTTTCTTTGTCACCTGACTCTTACACTTTTCCTTTTGCTCTTAAAGCTGTTGTTTCTTTATCCGACGTCGTTTTGGGTAAGCAGGTTCATTGTCAAGCTGTTGTTGCTGGTTTGGACTTGCATTACTCTGTTGCTACTTCGCTTGTGAAGATGTATTCTTTTTGTGGTAATCATGTTTCTTTTGCACGTAAGGTGTTTGATGAATTTAGTTTTTTTGGATTTGAACATAGTTTGGTTTGGAATGCTATGATTGCGGCTTATGCTAAGGCTGGTGATATGTTTAATGCTCGGAACATGTTTGAATCTATGCCTCAGATGGATAAGAATGTTGTTTCCTGGACTGCTCTTATTTCAGGTTACACGCAGGCTCAGAATCCTAATGAGGCTATCACGCTCTTCCATAGAATGCAGCTGGAGAATGTCAAGCCAGATGAAATTGCAATCCTGGCTGTGCTATCTGCCTGTGCTGATTTGGGTGCTCTTCACTTGGGAGAGTGGATTCACAACTACATTGAAAAGCATAACTTGCGTAAGATTGTCCCTCTCTATAACTCACTCATAGACATGTATGCCAAATCAGGTAACATAAGTAAAGCACTGCAACTGTTTGAGAACATGAAGCATAAAACAATTATAACCTGGACAACAATGATTGCGGGGCTTGCTTTCCATGGTCTAGGAAAGGAAGTCCTTCATGTATTTTCTCGCATGGAGGAGGAGGGTCGAGTTAAGCCAAACGAAGTCACCTTTATCGCCATCCTTTCTGCTTGTAGTCATGTTGGATTGGTTGAACTAGGCCGCGATTATTTCACGTCTATGAGATCCAGATATGGAATTGAACCCAAAATTGAGCACTATGGCTGCATGATTGATTTGCTTGGGCGTGCTGGCCATCTTCAAGAAGCAAAGGAACTGGTGGAGCGGATGCCATTTGAAGCAAGTGCAGCTATATGGGGATCCCTTCTTGCTGCCTCTACTAGGTGTGGTGATGCTGAGCTAGCAGCAGAAGCATTGCGTCATCTTATAGTGTTGGAGCCACACAATTGTGGGAATTATTCGCTCTTGTCGAATACTTATGCTTCGCTTGGTAGGTGGAGTGAAGCTCGGTTTGTAAGGAAGGTTATGTGGGATAATGGTGTGGAAAAGGTTCCCGGTGTAAGTTTTATTGAGTTGAACAACAGAGTATATGAATTCATTGCTGGAGACAAATCAAACATCTACTTTGTTGGCATATCTGATGTTCTTCATAGCTTAGATGGGTTACTGAAGATAGAAGACCACTAG

Protein:

Promoter(3k):

>AM02G012770.1
AAAAGTCTTTTGTGTCAGAAATTTGAAACGTAAAGGACCTTGTTGGGGAAAAACTCAAAATACTAACGTAAATTTGTAAAATAACTTAAAGGACCTCAAATGTATTTTAGCCTAAAGTTTAATATTTTTTATCTGTTGTTATGAAGGAGGTACGAATATAAAAAATACTTGCAGTATTTAGTCAAATGCATAAAACAACCGTTAAAATATAGTGTTAAGTAGTTGAATAGTAGTCTGAAATAATATCCACACAAAACATATGGGAAAATAACATTGTATTATAACACTGTCTAAAGGGACAAACTTGACTAATATCCGAGTTTGTCCCTTTCTCTTAGACATTAGAACGGGGTCAAAGACCTCTAAAATAAAAGAAAAAACATTGTAGTATTACAATCCATTATTCATGCAATTCAAGCTCTCAAGCTATTAAAGAGCTTAAATTAAGTCAAACTTTAGTTTGGAAATATGTTTATATCAACCTCAAGTCCAATTTCGAGCTGAATCCAGCTTGACTCAACTTAACTCATTTCTACCCTTACCTAGTTGCAATCCTATCCATTATTCAATTTTTCATAAATATAATCAATAATTAATTAATTATAAGCTTATATATATTTCAGGTCCCTGTAAATATAGTGTGTTTTGGTTTAAGCTCTTCGGTTAACCCAGCGTTACAAAAACACTGAGTTGGCTAACAAAAGTGTGAGTTTTCATTTATTTATATTTTCTAATTTATTTTTAATGCTGATTGGACTGACCATGTCATTACTTTTTATTTTAATTAATTTTTATTCTTCATCTTTCTCGATCTTTTCCGTCTTCCCAGAAACCCTAAATTCCCAAATTGATTCCTAACACAAAAACCCACAAATTCAATTCAATTAGTTCGATTGAAGTAAAAACACGCCATCTAGATTCCCAGGTTGTGTTAGATATCAACAGAACCATACTCAAACCTTGATTGGCAATGATATCTCTCTTAAAAATCACATTGAATCAAAAAGCAAGCACCGATGTTATCAATGGCGGATTATAGAGGTGACAAAATCTGCGGATCAGTTTCGCTTTGTAGAGCGAGTCCGCCGCGATCTCCATCCGTCGCATCAACACCATGTCGTTGAAGAACGACATTATCTCCGACGCGGTTGTTTCCACCGTACGCGACAGCGCATCGCAGTTGTGTGAAACGAACGGTATGGAAGTTTCAACTGTTAGGGTATCTGTTGAAGATGAAATGAAGCGACGTCGTAGTGACAGAAATGTTGACGCGGGTTTCAGAATTTTGGATCCAAATGTTGATGAAGTAATGCATGATAGAGGCATTTGGATCTGTTACTGGAAAATGCAATGCAATTTAAAAAAAAAAAAGGAAAATGAAAGGAATAAATGGTTTTGGTGAATGAGGAAAGGAATGTTATGTTAGAATAAGGAAGGTGTGCAAATGATTAGAGGTTTGGTTAGGTGAATCCCAAATTCAGAATCTGAATCCCAATCTGAAAAGGAACCCTAATCCTTCAGATTCAGGTTTACATGGTTTCACCAATGGTGGAAGTGGAACAAAAATGGGTAAGGAAATAGTTATGTTGGGGAAGAGAGAAAGAGAGAAAGAGAAAGAGGAATAGAAAAGAGTAAAGGCCTAAATTCGTCACAATTTTTTCGCGGGACGAATTCGTCCTGACAATCACACATTGGTCCCTGACAATTCCAAAACGAGACACGTTAGTCCCTCCATCCATTTAACCGTTAGCAGTACAGTAAACGTCTCCTACGTGGCACGTTAAGTGCCACGTGTCACGTTAGATTTAAAAAAGGGACGAATCAGTCTCTGACAATTTAAAAAAGGGACAAATCAGTCATATGTTACTATTCATCGTCTTCTACCTCATGAAATCCCTAATTCCTAATTCCCTTCACCCTTAATTCCTTTGTAGTTTCAAATCTGAACAAACGATTAATAAACTTAAAGCTGCACTTTTTTTCAGATCTGAACGAACGATTAATAAATTTGAATTACTTAGATGTTGATCAAGTTGTGAGACAAACACCATGTCAATTTGTTGTTTGTGAGGTTAACTATTGAATACATTCAATTTGTTGTTGAGATTAAGAAAAAAAGTGCAGCTTTATGTTTATTAATCGTTCGTTCAAATCTGAAACTACAAAGGAATTAAGGTAATTCAAGATTAAGGGTGAAGGGAATTGGGGATTAGGGATTTCATGAGGTAGAAGACGATAAATAGTAACAGATGATTGATTTGTCCCTTTTAAAAATTGTCAGGGACTGATTCGTCCATTTTTTAAATCTAACGTGCCACGTAGGAGACGTTTACTGTGCTGCTAACAGTTAAATGGATGGAGGGACTAACGTGTCTCGTTTTGGAATTGTGAGGGACCAATGTGTCTCGAAAAATTTGTCAGGGACGAATTCGTCCTGCGAAAAAATTGTCAAGGACGAATTTGGGCCTTTACTCAATAGAAAAAGAAAGAGAGAGGGTTTTGGTTATCCAGATGAGAAACTGGAGATGATGAAGATGAGGAAGGCGGGGAATTCAGAAGATGGGAATAATGAAAATTAAAAATAATGACTTGTCATTACAAATCAGCATTAAAAAAATAAAAAAATATAAATAAATGACAATTCAGATTTTTATTAGCAAACTTAGCATTTTTTTTGTAACGATGAGTTAACAAAAGGGCTGATATCCCCTAAGTAGGTAGTTTAGTTAGCGAGCTAAGAAATATGAATGAGTGCACCAAAAGAGTGCAAGAATGAGGTTCTAGGTTCCCGAAAACTAACATTTCCCCCCCCCCCCCCTAACCTTCCTTATAAAAAAAACAATATATTTCGTAAGGGTTTTTTATTAATAAAAAATTTTCAGAAACTTAAACCAAGGACTATTTGGAGGCCTAAAACATATTTACGCGTTAATTATATTAACCAATTATTATGAGCTCACTTTATGGTTTCACCACCACTATGGTGGTGTATGTCTGTTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	228	257	6.80E-46
PF01535.23	PPR	300	326	6.80E-46
PF01535.23	PPR	329	358	6.80E-46
PF13041.9	PPR_2	225	273	6.20E-41
PF13041.9	PPR_2	299	326	6.20E-41
PF13041.9	PPR_2	327	375	6.20E-41
PF20431.1	E_motif	447	507	2.30E-16

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009451	RNA modification	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0016787	hydrolase activity	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif

trEMBL

trEMBL term	Description
A0A9D4W9H6	_

SwissProt

SwissProt term	Description
PP433_ARATH	Pentatricopeptide repeat-containing protein At5g56310

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G56310	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0180001611.01.T01	_
Oryza sativa L.	LOC_Os01g15530.1	tetratricopeptide-like helical, putative, expressed
Cucumis sativus L.	Csa013001	_
Glycyrrhiza uralensis Fisch.	Glyur001560s00035047.1	_
Codonopsis lanceolata	Cl_chr01_08060T	_
Arachis hypogaea L.	AH13G52780.1	Pentatricopeptide repeat-containing protein At5g44230 like

Expression pattern