Gene detail

Detail information of Am02G011710.1 Annotation

Gene ID	Annotation
Am02G011710.1	SNF2 domain-containing protein / helicase domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G011710.1	mRNA	Chr02	99114947	99132529	-

Sequences

CDS:

>Am02G011710.1
ATGAAACCTGAGTTATACGAAATCTCCGACGACGAATGGGAGAATCATTCCTTCAAACCCTCACGAGTTCTCAAGAGACCTCGTTCTCCACCACCACCTATCGAATCCTTCGCTTACACCTCTCACACCCGCAACAATAAGCCCGAAGTTGTTTCCTCTTCCTCCGATGAAGACTGCGTTGAAATCATGCCAAACACGACGAATGTTCAGCAAAGTCTCGATGACTTGGAGGATGCTGACGTGGACGACGGCGACGCACCTGCTGCCACGACGAGTCGTGGTCGGCGGTTCATAATCGATGATGAGGAAGAAGAGGAGGAAGGTAATAGAGATGGAGGTGCTGTTGAGTTGTATGACGTAGGGTTTAGTGATGAGGAGGATGTGATTGAAGAAGGAAATGAAGATGATGTGGTTGTTAAGGCTTTGCAAAAGTGCGCGAAAATTTCGGTGGAGTTGAAGGGCGAGTTGTTTGGGTCTTCGGGGACTGCTTGTGAGAGGTATTCGGAGGTGGAATCTTCTTCAGTGAGAATCGTAACTCAGGAGGATGTTGATGTTGCGTGCGGTTCTGAGGATTCGGATTTTCAGCCTCTTCTTAAGCCGTATCAGCTGGTTGGTGTTAATTTCTTGCTTCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATTACATATTTGACTTTGTTGAATCGTTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAACTAAAGAAGTGGTGTCCATCCTTTTCTGTTCTTCAATATCATGGGGCTAAGCGCACAGCATACTGCAAGGAGTTAAGCTCCTTGTCCAAGTCGAGATTACCTCCCCCATTTAATGTTCTACTTGTGTGTTACTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCCTAAAGCGTTGGAAGTGGAGCTGTGTACTGATGGATGAGGCACATGCTTTGAAGGATAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCAAATCAACGCTTGATGCTGACAGGAACCCCACTTCAGAATGATCTACATGAGTTATGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTAAAAAAGTTGCTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAGCAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTGTTATGGAAAAGCAACAGGAACATGCTTACAAAGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATATCAAAATCTTCTGAGCTTAACTCAAAAAGTGTTCTTGAAGTTCTTCCTCGACGGCAAATTAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTGATAAGACGTATCTATAGTGATGAGGATGTCGTTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGACGAACTTAGAAGTTACAATGACTTTTCCATTCATCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTTCAGATAAGTATGCCTTGCTTTCTGCAAAATGTCGGTCCTTGGCAGAACTTCTCCCTTCACTGAAGAAGAGCGGTCATCGTGTCTTGATCTTTAGTCAGTGGACATCAATGCTTGATATATTGGAGTGGACTTTGGATGTCATTGGGCTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTTGATACGTTCAATAGCGATACTTCAATATTTGCATGCTTGCTTTCCACGAGAGCTGGTGGACAAGGCTTAAACTTAACAGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAAATTGATAGACAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACAAAGCCTGTAACCATATATAGGTTGGTGACAAAAGGAACGGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTCGAGTCCATGGAAGACATCAACGAAGGGGATATGCCTGAGAAGACCATGGGAGAGATATTGTCTGCGATTTTGTTGAGTTAA

Protein:

Promoter(3k):

>AM02G011710.1
AAAAATATATGTTAACGAGGGTAAGAATGAAATAAAATCAATACACATTATAAGACGAAACCTACTTGCAAGTTGAAATAACATATGGAAAAAAATACTTCAAGCTAATAAAAAATATTATAAGTCAAAAATTACTTAAGTGACGTGCCACAAAGAAGCTACTTTTTTTTTTGACTAAAACTTGCTTAATGCATTTCATTCAAAATAATTGGTTGAATACAATTTGGGATATTATCATGAACTTGGGAGCTAGCAAAAAAAAGTAGCACGAGCCAACCCAGTTTTCGCTTCATTCCAAATTCCACTCTCAGCCCAGATAGCGCGAGCCCTGTTGCAAACGAAAAGCAAATGCCACTCAGTTTTCGCTTCATCCACACAGAACGGACAACCCTCGACGCAATCCACCCTCTTCACTCTAAGATTTGTTCTCACGGGGGAGGCATCCCCTTTCAGCTCGCCAAAGAAGAAGCTTGATTTTTTGGGGTATTTTCATCCAATCTCCCTCTTTCTTGAGATGATTATTGTCGATTAGATCCTCCATAATTCCGTAGTTTGCCGACCTCACAGTGTAAGAACCGAATCTGCTTCTCCACCACAAATGCTTATCACCACTGTCACGGTCAAACAAAGGTGTTTTGAGAATATGAGCAACTTCATTGGCCTCAAACATTTGTTGTACAAGCCCAATATTCCAACAACCCGAATCTTGGTCTATAAGATCAGAAACACGCCAATGTTTAGTCCCTGGAACAATAGTGGATTTAACAAAAGCCTCTTTTTTATTTTTAAGCCATGGATCCCTCCAAATAGAAATACTCTTACCATCCCCTATCCGCCACCTCTCGATCCCAAATTAACCACCACCCGGGAAGAGTAGATACTACGCCAAACAAAACTTGGACAAAGAAGCTACTTAAAAATAATGTTTGTGTTTATAATAAAATATTCTTTATTATCTTTTTTTCTTTTATTATTCTCAGTAACCTTCTAAATTCAAGCAAAGCCCTAACCAACCTCTTACATTCACGGTTGGGGCCATCCCCCCTTTACACGTAGTAATTCATTATACGAAAGAAGTTAGGATTCTCACAAATACTTGTGAAACAATTTATGAGAGAGTGACACATACATTATAATAATAAATGCAATAGATATCGTTATCTTATTGTTTGTGTGTCTCTCTCATAAGTTCTCTAAGAAGTACTTGTGGAATCCAAAATTGAAAGGGAGTTTGGTTTAGTCAAAAAAAGAAAAAGGAAAGAACTTAGGTATATATGGCTTAGGCTAAATAGCACTTTTGGTCCTTTATGTTTGCTCTAGGTTTCACTTTGGTCCTTTATCTTTTTTTGGGTCCGTTTTGGTCCCTCATGTTTCATTTTTGTTTCATTTTGGTCCCTGCCGTCAGTTTTGGCTAATGGACGCCACGCTGGCAGTTAACTGCTGACGTGGCGTCCTCAATTCATTAAATTACGTGGCAACAAATATATTATTTAATTGTAAATAAATTACACAAAAGCATTTAACTTTTTTAATTGATAAAACAATTAATTAAAATTAAATCAAAAACCCAATCCTTTCTCTTCGACATCCTCATCTGTTCATCACCATCATTATGAATTTGAAGTTCAACCCAAATCTGGAAAAATGCAATCACTTGCTCAACGAAGAACAAAACGAAGAACAACGACAGAACAAAACGAAGAACAAAATAGAACAAAACCCAAATCTGGAAAAATGCAATCACCTGCTCAACGAAGAACAAAACCCAAATCTGGAAAAATGCAATCACAGAACAAAACGAAGAACAAAATAGAACAAAATCAATCACATGCTCAACGAAGAACAAAATAGAACAAAATGAAGCACCAGAACAAAACGAAGAACAACGAAACACAAAATCAATCCCAAATCGAAACCCATTTTTCAGAAAGAACCCAAATCTGGGTTCTCTGTTGATGCTCATTTGTTTCATTTTAGTCCTCTCTGTTTTTCCTTGGTTTCATTTTGGTCCCTCTCATTGTTTGTGTTGTTTCATTTTGGTCCCTTTCAGATCTGGAAAAACTAAACAATCAGAATCTTCATCCTCATCACGTTTGCAGGTACAAATCTAGAAATGCAATCTGGGCATTCAGTGTACAAAAACATATTTAAACCAAGGAACGATTTCGAATCGTTGTTCTTCGTTGAAGAAAAACATATTTAAACCAAGGAACGATCAGAATCTTCATCCTCTTCAATCGTTGTTCTTCGTTTGTTCTTCGTTGTTCTTGATACGATTGGGGATACGTTTGTTCTTGATATTGACGGTTCTTCGTTTAATTCAACAAAAAGAACAATCGTTGTTCTCCGTTTGAGTTCTTTTTGTTGAAGAAAGATTGGGGATACGATTGTGTTGTTGAAGAAGAAGAAGAAAGATTGGGGATAGGATTGTTGAAGAAGATTGTGTTGTTATTGAATGCTTCCCAGATCTCTTCCCCTTTTTTTTATTTTGATGTTTTTAGTTTTTGTTAAATAATATTAATTTTGCCACGTTATTTAATAAAAATGGACGCGTCAGCAGTTAACTGCCAACGCGGCGTCCGTTAACAAAAACTAACGTCAGAGACCAAAATGAAACGAAAATGAAACACGAGGGACCAAAACGGACCAAAAAAAAGATAAAAGACCAATATGAAACCTAGAGCAAACATAAATGACCAAAAGTGCTATTTAGCATGTGGCTTAATAATTAAAAGCACAATTTAGAAAAATATTAATAATTAAAAACAAGATTAGTGCAAGTTTTCTCCGTTGGCCATATATGGCTTACATTCCCCGCGCTCGTCGCTTTCCACATACTCTTTTCTTCTTTCTTTTCCTTTGATTCAATTCAATTCTCTGACTCTCTGACTCTGATCCCAGTTCCCACCCTTTCTCACTCCTAAACCTTTTCACAAACACCTCGTCTTCCTTTCACTTCAACTTCCACTTCTTCTCTGATAAAAACTAGGGCACACAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	218	504	1.10E-56
PF00271.34	Helicase_C	574	686	3.70E-19
PF04851.18	ResIII	219	371	3.60E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR19
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0006974	DNA damage response	Biological Process
GO:0016787	hydrolase activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0004386	helicase activity	Molecular Function
GO:0004674	protein serine/threonine kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0AAN9K1R9	_

SwissProt

SwissProt term	Description
CHR19_ARATH	Protein CHROMATIN REMODELING 19

KEGG

KO	Description	Enzyme
K14439	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G02090	SNF2 domain-containing protein / helicase domain-containing protein
Medicago sativa L.	MsG0180001312.01.T01	_
Oryza sativa L.	LOC_Os04g47830.1	SNF2 family N-terminal domain containing protein, expressed
Cucumis sativus L.	Csa008326	_
Glycyrrhiza uralensis Fisch.	Glyur000171s00016628.2	_
Codonopsis lanceolata	Cl_chr01_32760T	_
Arachis hypogaea L.	AH13G55370.1	Protein CHROMATIN REMODELING 19 like

Expression pattern