Gene detail

Detail information of Am02G010470.1 Annotation

Gene ID	Annotation
Am02G010470.1	RNA-dependent RNA polymerase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G010470.1	mRNA	Chr02	78412379	78417227	-

Sequences

CDS:

>Am02G010470.1
ATGTGTAAGACAATTCAAATGCATGGATTCCCAACTAATGTTTCTGCTGGAGAGGCAAGGAAATTTTTAGAGCAACATACTGGCATTCAAACTGTTCATGCTGTAGAGGTTGAGAATCACAAAGATGGAGCTTCTTTCACAAATGTTAATGTTCAATTCACTGACAAAAAAAGTGTTGAAATAATCTTGGACTTAGTTTCTCAACATTTATCTTACAATGGCTATGTTCTTAATGCTATAGAAATAAAACCTGACATTTTGCCAAAGCCAACAAGAATCTTTGCTTATAACATGGATGGTATAGGAGTACACTTTGGATGTCAAACATCTAAGGAAAAACTTGGTGTACTCTGGGAACATCCAAATGCTTCAGTTAAATTTGGATCCAGATTAAGAAAGATGTATATTTATTTTCATTATTTGGCTAAGGATTATAAGCTGCAGATTTCTTCTGAGACTATATCACGCATCGAGCTACATCACTCACATGGTCTAAACAAGCAGTTTCTCCTTTTTCAGTTACGCGGTGCGCCTCGAATCTATGAAAAGGATGTTTCAGAAAGCAAATATTTTAAGGAGGATAATGATAATCATTGGTTTAGAGGAGTAGATTTCACCCCATCATGCTGCATTGGACAATCTTCTGCATTATGTTTTGAGCTTCCACAAAGTACTGAGCTTCCAAATTTTAGTCACCACTATAAAAATTATTATGAAGTTGGAAACACCTTTGCTCTTGAAAAACATAATAGTTTCTCAATTAACTTGAATTATGTCCCAATGGTGATTCCACCACAAAGATTCAACTTGCCATACAAAATTCTGTTCAAAATCAACTCGTTAGTCCAACATGGTTGCCTTCCTTTACTAGCAATTGACCCAAATCTTTTTCATATGGTTGATCCTCAAAGAATAAATGTTGAATATATAGAAAGTGCTTTGAATAAATTATATCAGATGAAAGAGTGTTGCTATGAGCCTGGAAAATGGTTGGAAAAACAATATCAAAAATATTCAACAAATAGTTCACTTCAATTATCTAGTGCCATTTCATTAGATGATGGGTTAGTCTATGTTCATAGAGTACAAGTAACTCCATCAAAAATATATTTTTGTGGTCCTGAAGTGAATCTTTCGAATCGAGTCTTGCGCAATTATCCTGAAGACATCGACAACTTCCTTCGTGTTTCTTTTCTCGATGAGGACATGGAAAAACTTCATTCATCAGATTTGATATCGCGCTCGCTTTCGATGGATGTGGACAGAGAAACAAAGCTTCATGAAAAGGTACTTTCTACACTAAAAAATGGCATAGCAATTTGTGACAAGAAGTTTGAGTTTCTTGCCTTCTCATCAAGTCAATTAAGGGATAACTCAGTGTGGATGTTTGCATCAAGAACTGGACTTACTGCATCTGATATAAGAAAGTGGATGGGAGATTTTCATGAAATTAGAAATGTGGCAAAATATGCAGCAAGATTGGGACAATCATTCAGCTCTTCTAGGGAAACGGTGAGTGTTGGAAGACATGAAATTGAAATCATTCCTGATATTGAATCTAAAAGAGGTGAAATCAAATATTGTTTCTCTGATGGTATTGGGAAAATATCTGCTGAATTGGCTAAAGAAGTGGCTAAGAAATGTGGTTTGAGGGATCATATTATTCCATCTGCATTTCAAATAAGATATGGTGGTTACAAAGGTGTTGTTGCAACTGATCCAACTTCATCAACTAAACTGTCCTTAAGAAAGAGTATGTGCAAGTATAAGTCAGAAAACACAAAATTAGATGTTTTGGCTTGGAGTAAACACAAATCTTGTTACCTTAACCGTCAAGTAATCGTCCTCTTGTCGACACTCGGGGTCAAGGATCGCGTCTTTAGAAAAAAGCAATGGGAGATTGTTAATAAGCTCAAGATGATATCAACAAATCCATTCAAGGCACTAGACATGATGTCTCCAGGAGAGTTTACAAACATGTTAAGGGAAATGCTTATTTGTGGCTTTCATCCAACAAAGGAACCTTTTCTTTATATGATGCTGCAAACATTGTGTGCAGCAAAGTTACAAGAATTGCAGCTCAAAACTAGAATATATGTTAGGAAAGGAAGATCAATGTTAGGATGCTTGGATGAAACTAGGACATTGAGTTATGGAGAGGTATTTGTGCAGATATCTCTCCCAAGAAAAAGTAAATATATTGTTAAGGGAAAGGTAGTTGTAGCCAAAAATCCATGTCTTCATCCAGGAGATGTGAGGATTTTGAGAGCAGTGAATGTACCTTCTCTACATCACATGGTAGACTGTGTTGTTTTTCCACAGAAGGGAAGAAGACCACATCCTAATGAGTGTTCAGGAAGTGACTTGGATGGAGATGTCTACTTTGTCTGTTGGGACCCTGATCTTATTCCTCCTCATCAGGAAAATCCCATGGATCATGCACCATCATCTAAGGTTATGAATGTGGATCATGATGTCACATTAAAGGATGTAGAGGAGCATTTCACCCACTACATTGTTAAAGACAGCTTAGGAATCATTGCAAGTGCACACACTGTGTTTGCTGATAAAGATCCTGAAAAGGCAAGGAGCCCTTCATGTATAGAGCTTGCAAAACTACACTCAATAGCTGTTGATTTTGCGAAATCCGGCGTGCCAGCAGAATTACCACAACATCTACGCATCAAGCAGTACCCAGATTTCATGGAAAAACAAGACAGACCAAGCTATCGATCAAACAACATAATAGGAATACTTTATCGCGAGGTGAAGAATGTTGCACAACAAAAAAGCCTCACTAAGTCTTTCACTAGAAAAGCAGCAAGGAAATTATATGATCATGACATGGAAATTGATGGTTTTGAGAAGTATAGAACCATTGCTTGTAAATACAAACACATGTATGATTTCATGTTGGGAAACTTAATGGATTACTATGGTATAGAGACAGAAGCAGAAATAATAAGTGGCAATGTTTTAAAAATGTCAAAATCATTTAATGATAGAAGGGATTTAGAAGGAATAAATCATGCTGTCATGTCACTAAGAAAAGAAGCTAGGAGCTGGTTCAATGAGATGATAAGAAAGCCAAACTCTCAAGGTGATGATGACTCTTATGCAGTAGCATCTGCTTGGTACCATGTTACATACCATCCTAGTTATTGGGGATGCTACAATGAGGGGTTAAAGAGGGATCATTTCCTCAGTTTTCCATGGTGTGTGCATGATACTCTTATTAAGATAAAGAAGGACAGCCTCATGGGATGA

Protein:

>Am02G010470.1
MCKTIQMHGFPTNVSAGEARKFLEQHTGIQTVHAVEVENHKDGASFTNVNVQFTDKKSVEIILDLVSQHLSYNGYVLNAIEIKPDILPKPTRIFAYNMDGIGVHFGCQTSKEKLGVLWEHPNASVKFGSRLRKMYIYFHYLAKDYKLQISSETISRIELHHSHGLNKQFLLFQLRGAPRIYEKDVSESKYFKEDNDNHWFRGVDFTPSCCIGQSSALCFELPQSTELPNFSHHYKNYYEVGNTFALEKHNSFSINLNYVPMVIPPQRFNLPYKILFKINSLVQHGCLPLLAIDPNLFHMVDPQRINVEYIESALNKLYQMKECCYEPGKWLEKQYQKYSTNSSLQLSSAISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDIDNFLRVSFLDEDMEKLHSSDLISRSLSMDVDRETKLHEKVLSTLKNGIAICDKKFEFLAFSSSQLRDNSVWMFASRTGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDIESKRGEIKYCFSDGIGKISAELAKEVAKKCGLRDHIIPSAFQIRYGGYKGVVATDPTSSTKLSLRKSMCKYKSENTKLDVLAWSKHKSCYLNRQVIVLLSTLGVKDRVFRKKQWEIVNKLKMISTNPFKALDMMSPGEFTNMLREMLICGFHPTKEPFLYMMLQTLCAAKLQELQLKTRIYVRKGRSMLGCLDETRTLSYGEVFVQISLPRKSKYIVKGKVVVAKNPCLHPGDVRILRAVNVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDVYFVCWDPDLIPPHQENPMDHAPSSKVMNVDHDVTLKDVEEHFTHYIVKDSLGIIASAHTVFADKDPEKARSPSCIELAKLHSIAVDFAKSGVPAELPQHLRIKQYPDFMEKQDRPSYRSNNIIGILYREVKNVAQQKSLTKSFTRKAARKLYDHDMEIDGFEKYRTIACKYKHMYDFMLGNLMDYYGIETEAEIISGNVLKMSKSFNDRRDLEGINHAVMSLRKEARSWFNEMIRKPNSQGDDDSYAVASAWYHVTYHPSYWGCYNEGLKRDHFLSFPWCVHDTLIKIKKDSLMG*

Promoter(3k):

>AM02G010470.1
GGCGAGCCCGCCCTCTCATTGACACCCACCAGTCGAAACGACCACTCCTCTCCCAAGCCAGGGCCATCAAGCAGCAAAGGCAGAAGCCTGTTCAGATCGACCTCCAAAACTCCAAAGAAGCAGAAAAACAAAGAATGCGGAAACAAATATCCACTCTACATTTATAAGCGCACAACAAAGGCTCAACAGCGGGCCATAAAGACCTGACCTTTACACCCCTAGCGAACGCTTTGGCTCCCAACAGTTGCACTGATTAAATGTGACCCCAGACGCACTAACCTAAGCATCAAAAAAAGGCGGGGAGAAGAGGGTGACAACAGAGACAAGCAACGATATAGATATCATTTATCAAGAGCAAGGAATACCATCGCAAGATTTGAAATCTACAAAATCCATCAGTACAAGAAAAGATTCTAATACAAAACCAATACAATGCACAAAACCTCCTCGGACCAAAAGTTTGGCCGGCCGAGGCGGACAAGAACCTTCCCTGCACCGTCGGAAGTGTTGTCAAAATAACAACAGACAAACAACATCGCCAAGGAAGTCATCAGAATGCTGTTGACCGCCGAGATCATTCTATGGTGCATCCAAAGGAAGGAACAGTTGCATAAGTACTTCGCACGCCTCCAACAAAAGTCACCGATCGAGATCCAACCACTCCGGTAAAAGTGTTCCCTTTTAGTATTAGACACTCCGCCGCCTCCTGAAGGGATAAAAACCCCATTGGAGTGGTGTAGAGTACCTAATAAAGAAGAACCGAACAAAAGAAATAACAACAGAGTAAACACCTATAAAGCATGCCGAGAAGCAGGAAAAAATGGAAAGAATGATGACAACACGAGTCAAGGGACAACTCTATTTACACACAAACCAAAAAACGGTCAAGCATACATTTAATTAGACAATAAGTACGCTTAGAAAATGAGAGACACCAACACCCTAAAGAAGACCAGAAGGCAGGTGCGAACCTCATAAATAAACAAGATGGTTGGTCAAACAACAATAAATGACAGAGCATGGGGATGCAACAAACCCACAAAATTGGCCACCCTTAAGGGCTTTGAGCACCTTTGCTCTGAAGGGCTCGGAGCTCGAAGGGCTTTGTACTGAGGGTGTCCGAAAATTGTCGAGAAGGGCTCCAGAAGACCGAGAAGTTCTCTAGAAGACGGAGAAAGGCTCCAGAAGACCGAGGAGGGCTCCCACGCCCCTTAAGGAAGACCCTTGCCCAGCAGGGAAGGGAAAGCCGAGTAGCACAATTGGCAGTCGAGGAAGCATGAATAGTACTAACGAAGTCCCCATACTACATGCGCCGCCATACAGACCATGCGCAGACCAAGATGCATCCGCGTAGAAGACAAACGAGAAGGGCGTGGCGGCTGGGCATTGGCTCGTACCAAAGTAGTGGCTATACCACCACCTCGGTGGCAAGCCACTACTTCGGTGGCAGGCGCAGGGCGGATAGGAGAGTCTGATTCCCTATAGCATAGGACACCCTAGAACTCTCTTTGTATTATAAATAGCTCATTCCACTATTGTATAGAGAAATTTTGGTTCATGTATTTGGGAGGTCTCCCTTAGTAATGCTATATTCCTAAGGGTTGCACGACCCTTATTTTATTTACAAGAACAGTAGTAATAATAATAATAATAATAACAATAATAATAATAATAATATAATAATAATAATAATAATATCAATAATAATTTTAATAATAATAATAATAATAAGGTAATGATTTACGATACTAAGGAATTATTCTATAGTAACAATTACTAATTTTTTGGTGACCATTATACAACAATCCAATGATTAGTACATACTAACCACAATTTAGTAATTGTGTGGTGCCTGAGCGGGTAAAAGAAAACACTGGTTAGTACATACTAACCACAATTTAGTGTTGGTGGGTCCCCAAATTTTTTCATTGATAGGAAAATGACTATTATGCCCATTTAGTAACAATTACTAAGGAATGCCTTAATATTCTAAAGAATTGAGCAATAGAAGGCATCAATGTCCTCAATTCATTCATACTAGGGACGGACATATGATCGAATCGCATTTTGTGTAGATACAAGAGGATGTTAAGAAAAGAATGAGGTTCCTCGTTTTGTGCTATACTTGGCAAAGTATAGAAAAAAGAAAAGCAAAGCACATAAGAAGATTCGGAACGAAATATAAAAGATTAAAAAAATATGGAGTAGAAGGAACGTAATATAAAAGATTAAAAAAATGTTAATGGGAAAAGAAAAGCAAGTTGGAGATAAAATAGGAAGGACATAAGAAGATTCGGAAAGGAAAGTTTTTGAAATAAAATTTAAACAAAGAAAAAGAGTAGAAAATAGTTGTGAATACTACACCGACATTTTAATAATTGTAAATTATGAATTTAAAAAAAATTAGTAAATTATTATTATTGTTGTTGTTGTAATTCAGAGATTAGTAAAATAATGTAACGCAGTACTCTTCCGATCATATAAAAATAACCAGCCATTTCCATTTCTACATCATGACACTCTTACTCTTTCCTTTGGTTCCTTTTGGCATGAGCTTTGGCCAGACTTGAGATATCCTGCATGTAAGTCCTTTTTTTACCCTTACATATAGATGCTTCAATTTCTCTGTTTAGATAAACATCTTAATGAAGTGTTTATAGTTTAAACGTTAATCATATAATTGCGTATATACAAGCTAATTCTATAATAAAAGATAAAATTAAGTGAAATTATTTTCATATAAATTATCTTGAAGAACTTATAGAAATAAGCTAAACAATTTATGTACATATATAGACTGTTTCCATAAGCTCTCCCAAATAGTTTGACAAGCGATTGTGTCGATAGATAAGCTCAAATAAACCAATTCAAATCGACCTTTATTTGCTCTACAAGACAATATTCACATTGAACATCGAAATGTAAAAAAAACATGATTTTTTCTGAAAAATAAGGAATTGAGCACCTAGTATTCATTTATAAATAAATTTCAGGTAAACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05183.15	RdRP	364	923	7.80E-191

Gene family

Gene family	Subfamily
Epigenetic Regulators	RDR1

Gene Ontology

GO term	Description	Category
GO:0001172	RNA-templated transcription	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0008270	zinc ion binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0006396	RNA processing	Biological Process

InterPro

InterPro term	Description
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type

trEMBL

trEMBL term	Description
A0A072VF26	_

SwissProt

SwissProt term	Description
RDR1_ARATH	RNA-dependent RNA polymerase 1

KEGG

KO	Description	Enzyme
K11699	RNA-dependent RNA polymerase	[EC: 2.7.7.48]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G14790	RNA-dependent RNA polymerase 1
Medicago sativa L.	MsG0180001189.01.T01	_
Oryza sativa L.	LOC_Os02g50330.1	RNA-dependent RNA polymerase, putative, expressed
Cucumis sativus L.	Csa016070	_
Glycyrrhiza uralensis Fisch.	Glyur000790s00021809.1	_
Codonopsis lanceolata	Cl_chr01_31270T	_
Arachis hypogaea L.	AH18G31110.2	RNA-dependent RNA polymerase 1 like

Expression pattern