Gene detail

Detail information of Am02G007890.1 Annotation

Gene ID	Annotation
Am02G007890.1	RNApolymerase sigma-subunit C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G007890.1	mRNA	Chr02	41343760	41349356	+

Sequences

CDS:

>Am02G007890.1
ATGGGTCTCTGTTTCGGTTTTAGGCTAAATCCAAGGCTCAGATGTAATAACGTTCCACTTCACTCTCCTCATTCCTTCACCAATTCACCCATCTTCTTTTCTTCTTCATCTTCTGTTGGAGGCAGGGAAACTGTATTCAATCACACTAGATTATCCTTGCTTTCGACAATTTATGAGGAAGGAGAAACTTTGCAAAAGGATTTTGGAAAGACATTTGCATTTTCGTCATCAGCGTTGGAAGCACCGGAAAGCGAATTATTACAAGAAGGAATAAAGGTAAGCAAAAGAGGAAAGAGGTCATTAAGTAGTGTGCATGAATTGATTGATAACGCGCAATTGTCTTTTGGAGAATCGCATTTCCATTTGTTAATGGAGAACCTAGGTGTTTTAGAAGAAACTTTTGCTGATTCTGAAACACTTAGGTTGGAAAGGGATATTATATTGCAACTAGGAATGCTTGGAGCCCTCGAGTTATTCAATGTTTGTCTGACAAGATCTATTGGAGCCTCACTTGAATCGGACCATACGGACATACCTCTTGAACAGGTTGAAGGGAACAGGATAAAATGTAAAGTAGATGATTGTACAGGAAAAGTTGTAGTTCGGTCTAGCAAGAAAAGGGAAAATAAAACAAGAAAGGGAGCATCTGTTGCCATAGGGGCTTCCACTCAGTCATTGCCTTTGGAAGATGATCAAGAAGATCTTATACGATTCCCAGCTTCATTTGTAAAAAGAGCATCAAATACAAATAATAGAAGAATAATGATTGCTAAAAGGGAGGCGCAAATGTCTGAAGGCGTAAAGGTTTTAGCAAGGTTAGAGAAAATTAGAACAGCTATTGAAGAGGATACGAAACAAACGGTAAGCTCGAGTATCTGGGCAGAAGCATCTGGAGTTGATGAGAAAATGCTACAGCAGCAACTTTGTCATGGCTATTATTGTAGAGATGAGCTGATACGGAGTACTCGGTCCTTGGTTCTATACTTTGCCAGAAAATACAGGGGTATGGGAATAGCTTTAGAAGATCTGCTTCAGGCTGGATACATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAGGGGGTATAGATTCTCAACCTATGTTCAGTATTGGATAAGGAAATCAATGTCAAGAATGGTGGCACGATATGCTCGAGGAGTTACTATTCCTTGGTCAATGAGCAGGGCAATAAATCAGATCAAGAAAGCAAGAAAAGTCTTGAAAAATAACTCCATGAAATACCCAGATGATCATGAAATTGCAAAGATGACAGGTCTTTCACTGGATAGAATTAGATCAGCTAGCAATTGTCTGAGAATAGTAGCTTCAATGAATCAGAAGATGGGGGATCGTGGTGTAGCATATATGGATCTTATTCCCGATATGTCAATAGAGAGTCCTGAAGAGGGTGTCATGAAACAACACTTTAGAAAGGACATATATGATCTCCTCAAAGTCTTGGATTCAAGGGAAAGGCAGATACTGAGCCTACGTTTTGGCCTTAATGATCACCAACCTAAGTCTCTTGAGTATATAGGGAGGATTTTCAAAGTTAGCAAAGAGTGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAGTTACGGATCGAAGCAACCTCATCAAAGTTACATTATTATTTGGACTAG

Protein:

Promoter(3k):

>AM02G007890.1
CTAAAAAGACTTTCTTTTCAGTTAATCAACTTTGGAAAATTAAATTCGTAATCACCTAGGCTCTCCCTGTGGATCGATAACTCTTTTATTATGCGACAAGACCGTGCACTTGCGGCCTATCAGTACCTTGCAGTCGTCCGGGACTGCAGTTGGTAGGTCTCCTGCCGTCTAAGTCGAGTTTCAAGATGATCCCGGGTGGGGTACCTGCGATGCCACTCCGACGCTCAAGTCATTATTGAGAATTGTAGAGTGTAGTAGGGAATGAGAGTGTACCTTTTTAACTAAGTGGGCTAGTATTTATAGGCATCTGTGACAGTCCTGATCCGTTGGATCGATTGGATGAATTTGAGCCGTCAAGACATGATAGTCATAAGTGGGCTGATTTGTTGTGGATATAGATCCTAGCTATTGGGCTGATCCAGGTCCAATTGATGGAGTGGGCCAACGGTAATAGTTGTTGCATCAATATATGGCATTCTTGAGATTTTAAATCAATAAGTGTGATTTCCTCATGAGCTCAAGACTCTTGACATTTGGAAGTAGCTCTGTGGCACTTTGACACCCCATAGACACTCACAGAAATTTATTTTATCTTGTTTTGACAGTATTTGACATGCTGGTGGCAAATATGTGTGATTACCTCTTTCATGTGGAGCTAACGGTTCTCTTATGCTCATCATAGATGTGGTATTGTGTAGACTAAAAACTAGGGTGGTTCTATCCCCACCCCGACTTGGCTATCCACACCCCCTAATTTGAAAAAATAAAATACAATGACGAAAAGACCCCTACCCCTTTTTTTTACCAAAAAAATACCCCTACCCCTTAAACCCCATTTTAATGAAGAAAAAATACATTATGTTTCTCCATAGTGAACTGAGTTCTCTAAAACACAAGTGAACTAAATTTATGAACTTCTTTACAATATAACCCTCGCGAACTCAATTCATTATAGTCATAGTGAACTCAATTATTAGAATTATTTAGAACATACAAATAACCAATATGATCTAAGTTTACTAGAGTTATTGTGAAATAGGGTGAAATAGGTTCACGAGGGTTTTAAATAAAAAAATAATCCTAGTGAATTGAGTTCTCTATTGTTTATCGTGAACTGAGTTCACGAGTTTTATTTTAAAAATTCTCATAGTAAAAGTTGAGTTCGCTAAAAAAATAATCCTAGGGAAGGGGTATTTTCGTCATTATATTTAATTTTTTAAAATTAGGGGGTATGGATAGCCAAGTGGGGGGGTAGAACCACCCTAAAATTCAGCGTTTTAAAACTCGAACCGGGCAGTCCGACCGATTCAACTAGGTCAGACCGATTCAACTAGGAATCAGACCTATGATCAGTCTAATCACCCAATTCAATCGGTTCTATACCTAGACCGGTGATGACGCCGGCGACTTGCGAGCTAAATAACAAAATCTAGCCGACTCAATCCAACCGGCTCAGTTGTTTGGGTTCTTGTTGCAATTATTTTTTTCATAAAAACAGCACATGGAGGCAAATGCCACACTATCTTACCACTAGGGTAGCAAACAACTTGTAGTAGGTGTGCAAGGTAATATATTTGTATCTATAAAGAAGCTCTAAACCTTGTAAAAAAGGAAAACATGTATTAGGAAATTGAATTTTTGTAACTTCAATGAGTTGGCCTAGTGGAGTACTATATGATTTGTGTCCGTTCAAATCCCCACTAACTTCTTTGGGTAAGGTAAATGTAATTACCTTTGTAAGTGTAGTTTGAGCACGAAGGCTTTTCCTACCACGCCACCTCTTCATCCTAAAGTTTTGTAACCAAAAAGATGGAATTATTTTTTGAGATTAAAAAGAAGGAAATTTACTCATCCTCTTCCATGTTTAGAAAATTTATTTTTTATACTGCGATGTTAAAACGAAATTTGTTAGAGTATTAAATTTGTATTGTGATTTTTTTTTGGGTTTTTTGGGCAAGGTGTGTAATTTTGGTGTATAATAAATTTTACATGTATGAAATTTATGGATCATGAAAATGGACCACGATCCACTACAGTCACTGCTCTCAACAGTGACTACGGTCAAAGAAACAATATCCATTGGATCATCCTAACATGTAATCTCATCCCTCCATTTTATTTATAAATAAAATAATGTAAAAATGTAAATAGAAGAGAGATAGAGATAAGTGACAACAGAGAATTCACATCCCATAAAAATTATGAATTTTTAATGGAGGTCGATGCGGTTCAATAATTAACCCCTTTATCTGACCTCTTACCAAGTGACTCAATGCATTGACTGAGTCAACGACCGGTATGGTTCTTAAAACATTCCTAAAAACTATTTTAGAGGAGATTGGTGTATGTATCAAAAAGGGGTGTACATAGCTACAAATATTTTTTTTAGAGAAAAAGAAAAGAAAATACAAAATAGTAGAAAAATCTTGTACCAAAAAAAATAGGCTAAATTATAGTTTTGGTCCCCCTATTTTCAAAAATTCAGACATTTAGTCCCCCTATTTTAAAACTCAGACATTTGGTCCCCCAATTTTAAAAAATCAAAGACATTTAGTCCCAAGAGGAATTTTCAGTTTTTTATGGTTAATAATCAAAGACATTTGGTCCCTCAATTTTAAAAAATCAAAGACATTTGGTCCCCCAATTTTAAAAAATCAAAGACATTTGGTCCCTCTTTGGACTAAATGTATTTGATTTTTTAAAATTGGGGGACTAAATGTCTGAGTTTTAAAATAGGAGGACCAAATATCTGAATTTTTGAAAATAGGGGGACCAAAACTATAATTTAGCCAAAAAAATAATAGAAAAATCTTCAAGCCATTAACGAGGGAGATGAAGAACTGGTGGTGGGAGTGACAGCAGCGCCATATCCACATCCACGTCGATTTACATTGCCTAACTTTTTTATGGCATTTTAATTCCTTCTCCTTTTTTCCGAACTTCCACAACCCCTTTCATGGACTCTCTTCCCTTTCACCTCACCAAACGCAGAATAAAACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04545.19	Sigma70_r4	485	537	5.60E-17
PF04542.17	Sigma70_r2	318	386	3.20E-14
PF04539.19	Sigma70_r3	398	472	2.00E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Molecular Function
GO:2000142	regulation of DNA-templated transcription initiation	Biological Process
GO:0006352	DNA-templated transcription initiation	Biological Process
GO:0016020	membrane	Cellular Component
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR007630	RNA polymerase sigma-70 region 4
IPR007624	RNA polymerase sigma-70 region 3
IPR007627	RNA polymerase sigma-70 region 2
IPR014284	RNA polymerase sigma-70 like domain
IPR000943	RNA polymerase sigma-70
IPR013324	RNA polymerase sigma factor, region 3/4-like
IPR013325	RNA polymerase sigma factor, region 2

trEMBL

trEMBL term	Description
A0A1S2Y3Z8	_

SwissProt

SwissProt term	Description
SIGC_ARATH	RNA polymerase sigma factor sigC

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G53920	RNApolymerase sigma-subunit C
Medicago sativa L.	MsG0180000843.01.T01	_
Oryza sativa L.	LOC_Os05g51150.3	RNA polymerase sigma factor, putative, expressed
Cucumis sativus L.	Csa018577	_
Glycyrrhiza uralensis Fisch.	Glyur000696s00018508.1	_
Codonopsis lanceolata	Cl_chr01_09790T	_
Arachis hypogaea L.	AH08G08800.1	RNA polymerase sigma factor sigC like

Expression pattern