| Gene ID | Annotation |
|---|---|
| Am02G007040.1 | DNA topoisomerase, type IA, core |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G007040.1 | mRNA | Chr02 | 33484176 | 33515613 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF01131.23 | Topoisom_bac | 402 | 842 | 8.30E-115 |
| PF01751.25 | Toprim | 274 | 387 | 1.20E-20 |
| PF13368.9 | Toprim_C_rpt | 951 | 1006 | 3.00E-20 |
| PF13368.9 | Toprim_C_rpt | 1009 | 1055 | 3.00E-20 |
| PF01396.22 | zf-C4_Topoisom | 885 | 921 | 2.80E-08 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | Molecular Function |
| GO:0006265 | DNA topological change | Biological Process |
| GO:0005694 | chromosome | Cellular Component |
| GO:0003677 | DNA binding | Molecular Function |
| GO:0046872 | metal ion binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR006171 | TOPRIM domain |
| IPR025589 | Topoisomerase C-terminal repeat |
| IPR013498 | DNA topoisomerase, type IA, zn finger |
| IPR003601 | DNA topoisomerase, type IA, domain 2 |
| IPR003602 | DNA topoisomerase, type IA, DNA-binding domain |
| IPR023405 | DNA topoisomerase, type IA, core domain |
| IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 |
| IPR013825 | DNA topoisomerase, type IA, central region, subdomain 2 |
| IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 |
| IPR013497 | DNA topoisomerase, type IA, central |
| IPR023406 | DNA topoisomerase, type IA, active site |
| IPR000380 | DNA topoisomerase, type IA |
| IPR028612 | DNA topoisomerase I, type IA |
| IPR005733 | DNA topoisomerase I, bacterial-type |
| IPR034149 | DNA topoisomerase 1, TOPRIM domain |
| trEMBL term | Description |
|---|---|
| A0A1S2Y339 | _ |
| SwissProt term | Description |
|---|---|
| TOP1_RICFE | DNA topoisomerase 1 |
| KO | Description | Enzyme |
|---|---|---|
| K03168 | DNA topoisomerase I | [EC: 5.6.2.1] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G31210 | DNA topoisomerase, type IA, core |
| Medicago sativa L. | MsG0180000747.01.T01 | _ |
| Oryza sativa L. | LOC_Os06g16980.1 | DNA topoisomerase I family protein, expressed |
| Cucumis sativus L. | Csa025786 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000097s00008325.1 | _ |
| Codonopsis lanceolata | Cl_chr04_02740T | _ |
| Arachis hypogaea L. | AH20G28780.1 | DNA topoisomerase 1 like |