Gene detail

Detail information of Am02G006590.1 Annotation

Gene ID	Annotation
Am02G006590.1	SHK1 binding protein 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G006590.1	mRNA	Chr02	30672323	30685944	+

Sequences

CDS:

>Am02G006590.1
ATGCCTCTCGGAGAAAGAGGAGGAGATACTAGCTCCACGAAGTATTGTGGCATAGAAATAAGATTCAACTCTATCATGAAGGACGCGTTTGGTTTCAATGTCGGTGGAGGCTTCGATTTCGTTGTTGCTCCTCTGATCAAGTCTCAGTATCGCCCAAGCAGCTACAATATCGATTTTGGAGAGCAGCGAAAGCCATATGCTAAGTCAGACATGAGCCTTATACCAAGCCTCTGGAAAAATCATGTAATAGGGAAAGTTAGCACATGGATAGACTTGGACTCGGATGATGAAACCCTCAGGAAGGATTCCGAAATCATTCTTAAAGAAGAAATAGCTTGGGCCTCTTATCTCTCTTTAAAGGCTTGCCTTCTTCCAGCTCCAAAGGGAACTACTTTGGCTAATTATGCTAAATGTGTGAACCAAATCTTACACGGCCTAGACAAGATGCAGTTGTGGCTTAGGATTCCATTGGGGAAGCTTGACGATGACTCTAGTCCAAGCTTCAATACTTCAGTGGCAGTTGATTCTTGGGAGACATGGAATTCATTTCGACTGCTGTGTGATCACCATAAAGAATTATTTGTTGTACTTGATAATTTGGGAATCCTGCCTTCAGACAACTCACTAAGTCGTTGGTATGGGGAGCCTGTTGCTGCCTCTATAATACATATAAATTCCTTTTTTACTAGCGATTATGATAATCAAATCTACCTCTCATGGGAGCTTCAAAAATTGATTACACATTTCTTGAACCATAATACACAGATCATTATATCTGAAGAGGAAGCTCTTACCATAACGGGTGAAGAAGAACCTTCTGACATTGATTCTGATGCAGATTCACCGAGACTTCCACATCCTTTACGGCCTTATCTAGACTATGTTGGTTATCTATACAAACAATTGGATCCTCTTTCTGAGCAAGAAAGTTCGCAGTTTCCTTACAGGGATGTTCTACTGCCAACCATACAACCTCTTAAGACTATTTTGGACTGTGAGGACTATGAGAATTTAGAGAAAGATACGAAGAAATACAAGCAGTACAAAAAAGCAATTTGTAAAGTCTTGAAGGACAAGGTTCCCACTGAAAAGGCATCTATGATTACCCCAGTATTGGTGGTTGTTGGTGCAGGGCGTGGGCCTCTTGTGCGTGCATCATTAAATGCAGCTAAAAAATCCGGGAGGAAGCTAAAAGTCTACGCTGTGGAAAAGAATGTAAATGCTGTCAGTTACCTTAATGAATTGTGCCGCTTAAATGGTTGGGAGAAAATTGTTACCCCAGTCCATGCTGATGTGCGAAACTGGAATGCCCCTGAAACAGCTGACATTTTGGTTAGTGAGTTGCAAGGATCTTTTGGTGACAATGGGCTGTCTCCTGAATGCCTTGATGTAGCCCAGAGATTTCTGAAGGAAGATGGGATTTTAATACCGTCTTCGTATACAAGTTTCCTCCAACCAGTAACAGCTGCAAATTTGTATGATAAAGTTAGGGGAGGAGGAAATGTTTCTTATTTTGAAACTGCTTTTGTTGCGAACATGCACAATGTTGCTCGGCTTGCACCAACTCAACCTGTATTTACCTTTACTCATCCAAAAGACCCTGTCAAAGAAAGCAGTAACCTGCAGTATAAGATTTTGCGATTTGCGATACCTGATGACACTGATTCAGCAATGGTACATGGATTCGCCGGCTACTTTGATGCAACTCTTTACAAGGATATGCATCTCGGAAATGAACCCTCTAGAGCTACGCCAGGTGTATTCACTTGGCCTCCAGCTTTTTTTCCATTAAGGACACCTATTTGTGTTCCTCGTGGTTCTACTCTAGAAGTACATATCTGGCGCTTTAATGATTCTGAAAAGGTTTGGTATGAGTGGTGTGTTACATCTCCTTCTGTGTCTCCAATTCACAACGTTAATGGGGGCCTACACTCGCTGAAGCTTTAG

Protein:

Promoter(3k):

>AM02G006590.1
AGGCAATGGGACCCATTAATTTGCCATGTCATTAATGTTAATTGAATATTTACCGCGTATTTATTGTTAATTGAATATTATGTTTGGTATTTTGTAAGATAATATTGTTAATTTAATAATTAGAAAAACTGCATTATCAATATAAACTAGGAAAATGTGGTGTCAGATAGGTATGATACCTTAGTATCGGACTTGTTCGGTACTTTGGTACCGCACCTTCGTAGACAAGTAAGCAAAACTCTCGGTTCGATACTTTCGTACCGTATTGTATATTTGTATACCCAGTATCAAAGTACCGTACCAGTTCGGTACTAAGGTACCAGACTGGTCCAAAATGCGACATGGGGTGGGTATGAGAGCGTGTAGACATGAAGGATATTTTTGGAATTTTTTAAAAAAATGAGGGTTTGTGACTAAGAGGGGGTGTTTGGAAAAAAGAGAAATGCTAACAACACTCTCTTTTAAACACTCTCTCCAACACTCACTTTATGATTGGTTTAAAATCAAGTGGGTCCATCACTTTGAAAATGGGAACCATTAATTTAATGGGACTCATGTGACTTTTAACGAATGTTATTGTTGTTGACCCAAAAGAAAAAAAATGAAGTGTCAATAAAAAAAGGGATGAGTCCGACTCAGAGTCGGCCCAACACCTACAGAGGCCTAAAGTGAATTATGGAGTGAGATCCGTGTGACAATAAAATTATTCAAACTCTTGAGATGTGTATGGATTTGACCAAAAAAAAAGATGTGTATGGATGAAGTATTTTTTGAAGTAGTGTAATTTTTGTGCAAATTTGAAATAATTTAATTAAAAATATTTCAATTCTCTCAAAAAATTACATTACTCCCAAAAAACACTTCATCCAAATATAGGTTTAATGCCCGATTCAATATATTTTTAACTCTATTTTCATAAATTTTATTGAAAACAATTATTGGACATCACAATAGCAACAAATAATACAAACGAAAAAACCAAACTCCATTAAATATACTATTTTTTTACAAGAATTTAATATATTATTTGGCTAGCTTAAATGAATAATTTAAGTCAAGAAAAATAAATGAATAATTTGTAACCTTTTATTAATCTACATTTAGGTCACCAACCCTCTAAGCAGTCTTTTTTATTGGGCTTTCCCTATTTACAAGAAGAGTTATGTACTCACAAAATAAATCAATTTAAAAAATAAAAATAAAAAGTGAGCCAACTGAGCTACGCGAACTTGATGTAATTTACCGAAATTTAATTTAAATATTATTTAACAGCAAAATTTTGAGGCCCTTTATTTTATTAAAAATTTTGAGGCCCAAAGCCATTGCCTTAGTAGCTTGGGCCTTGGGCGGCCACTGTTTACAAAATCACTATTGGCAAAATATCTCTCGAGGTCCCTTAACTTATTTTCAGGTAACGAATAGGTCTCTTAACTTTTTTTTAACAATTAGGTCCCTTATGTTTTAAAAACGTTGCACTGTTACCATTTTTTGTAATTTCTGTTTAACTCCATTAAAAAAAAGCTTAAGTGGCTGACGGTGCTGACGTGTATGTTGATGTGGCTAAACAGTGATGATATGGCAGGTTCACCTAGGATTTTAATTAAAAATAATTTTTTATTCAAATATAGAAAAAAGCCAAAATAGCTCCTATGTGAATGTTCATCACTTTCCCAGTATCTTTAGATCATGAATGTTCATCGTTTCAAATCGTTCTCAGAATCGTTCCCAGAATCGCTTTCGTTTTCAGAATCGTTCAAATCGTTTTCGTTTTCGAAAATCTAGGTTTCTGGGTTCATTTTCGTTTTCGAAAATCTGGGTTTACAGTTCCAATTTTGATTTCGTTCATGTATCGTTTCAAATCGCTTCGATTTCGAAAATCTGGGTTTCAAATCGTTTTGATTTCAAAAATCTGGTTTTGTTTTTGTTCTTGTAAACCCCAAATCGATATCGAAAACTTTTTCAGTTTTCGTTTCTGTTTTGTTTTATTGCAACAGATATGCAACAGATGATGATGTTTGGAACGAGCAGGTTGCAACGATTGTTGGAGATGATGAGGAACGAAGAAGGGGATGGTGGATGGTGGGGTTCCATGGCTTCCATGGCTACTGCACCTATTTTCTTGAAGAAGATGATTTTTTTAATTTTTAATTAAAAATAAATATAAAATAATGAGTCAACAATTAAAATTTCACGTAACCATAAACAAAAACTATTAACAAGGACAACACAACGTTTTTAAAACTTAAGAACTTGATCATTACCAAAAAAAAAGATAAGCGATATATTTGTTACCCCCAAATAAGTTAAAGGACCCGGCCAAATATTTTGTCGTCTGATGGTCACCATTGTTGCGGTGCTTTTCTATAAATCGACTTGAGTACCGTTTCTACTTTCTACTTTCTAGTGTGAATCCTAAAGCCACACTCTCATCATAAATAAGTCATCTTATGAAAGTTGCAATCCACGGATGCGCTTTCCTCTTTTTCACATGAAGCATCCATAGCATACTTTGAAAGTGCGGTGGAAGCCACTCGTGATAGATTCGGGATGAATTTGTTCGGGATATTGAGGATTACTCTTCTGCAAATAGCCGTCATTTTTAGAAGAATCTGGAAACCGAGCTGGTACGGAAGTCACGTGTCACAATGTTAACAGCCGTTAGAAATTTACGGTCTTCGTCGTTTCCTTTCCCTTCCAAGCAAAGACCGTCACTCTAACGAGGATGACAAAATCAGTTAGACGTTAGAACTGGTTAGTTATAAACGCTTCGGTTACCAAGTTTAGTCCAGTTAACCAATTTTGTAAGGACTTCAATTTCTGCTGTATAAATAGTCGCACTCTCAGAGTATTGGTGATTTCACAATCATAATTTTCTCTCTCTGATTCTCTTACGCTGTTCTCTCTCTCTCTCTCTGATTCTCTCACTCTGTTCTCTCTGTGATTCACAATCATAACTTTCTCTGATTCTCTTTCTGTTATTGCAAGTGAAAGTTTGCGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF17285.5	PRMT5_TIM	37	300	2.60E-61
PF05185.19	PRMT5	308	476	2.70E-54
PF17286.5	PRMT5_C	479	639	1.00E-42
PF02475.19	Met_10	371	448	2.20E-07

Gene family

Gene family	Subfamily
Epigenetic Regulators	PRMT15

Gene Ontology

GO term	Description	Category
GO:0005829	cytosol	Cellular Component
GO:0006338	chromatin remodeling	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0042054	histone methyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily
IPR007857	Protein arginine N-methyltransferase PRMT5
IPR025799	Protein arginine N-methyltransferase
IPR035247	PRMT5, TIM barrel domain
IPR035248	PRMT5, oligomerisation domain
IPR035075	PRMT5 arginine-N-methyltransferase

trEMBL

trEMBL term	Description
K7KTN4	_

SwissProt

SwissProt term	Description
ANM15_ARATH	Protein arginine N-methyltransferase 1.5

KEGG

KO	Description	Enzyme
K02516	type II protein arginine methyltransferase	[EC: 2.1.1.320]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G31120	SHK1 binding protein 1
Medicago sativa L.	MsG0380017526.01.T01	_
Oryza sativa L.	LOC_Os02g04660.1	arginine N-methyltransferase 5, putative, expressed
Cucumis sativus L.	Csa002058	_
Glycyrrhiza uralensis Fisch.	Glyur000228s00011906.1	_
Codonopsis lanceolata	Cl_chr02_32320T	_
Arachis hypogaea L.	AH18G30760.1	Protein arginine N-methyltransferase 1.5 like

Expression pattern