| Gene ID | Annotation |
|---|---|
| Am02G006040.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G006040.1 | mRNA | Chr02 | 26707173 | 26709830 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 214 | 261 | 4.80E-44 |
| PF13041.9 | PPR_2 | 315 | 362 | 4.80E-44 |
| PF14432.9 | DYW_deaminase | 530 | 622 | 7.80E-44 |
| PF01535.23 | PPR | 216 | 245 | 5.10E-32 |
| PF01535.23 | PPR | 288 | 314 | 5.10E-32 |
| PF01535.23 | PPR | 317 | 347 | 5.10E-32 |
| PF12854.10 | PPR_1 | 289 | 311 | 2.10E-23 |
| PF20431.1 | E_motif | 434 | 494 | 2.50E-12 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0008270 | zinc ion binding | Molecular Function |
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A396JFF5 | _ |
| SwissProt term | Description |
|---|---|
| PP330_ARATH | Pentatricopeptide repeat-containing protein At4g21065 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G21065 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0180000607.01.T01 | _ |
| Oryza sativa L. | LOC_Os03g60690.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa005842 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000220s00014785.1 | _ |
| Codonopsis lanceolata | Cl_chr04_23380T | _ |
| Arachis hypogaea L. | AH16G36100.1 | Pentatricopeptide repeat-containing protein At4g21065 like |