Gene detail

Detail information of Am02G005940.1 Annotation

Gene ID	Annotation
Am02G005940.1	EIN3-binding F box protein 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G005940.1	mRNA	Chr02	26124205	26127930	-

Sequences

CDS:

>Am02G005940.1
ATGTCTCAAGTCGTTGGCTTTTCTGGTGACAATTTTTTCTCTGGGGGATCAAGATACACGAACCCCAAGGAAGAAGGTTTCTTCCTGTCTCTTGGCCATCAAGTTGATTCCTACTTTCCTCCTCAGAAGAGATCTCGCATCAGTGCTCCATTTGATTTCAGTGGAGAATGGTTTGTGCAGAAGCAGCAAACATCAATCGAATCTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCAGCAGGTGAAGCTAGGAGTGCTTGTGCTTGTGTTTCCAAGCGCTGGCTTATGCTTCTAAGCAATATTTGTAAGAATGAAATCTGTGAGAATAAAATGGTGGGTGATGATGAAGAGTTTGGAGGTGAGGGATACCTCTCTCGGAGCTTAGAAGGAAAGAAGGCCACAGATGTTAGACTTGCTGCCATCGCAGTTGGAACTGCATCACGAGGAGGATTAGGGAAGCTTTCAATCCGTGGAAGCAACGCGAGTCGTGGGGTGACTACTCAAGGTCTCAAAGCAGTTGCTAGTGGATGCCCTTCTTTAAAGTCTCTTTCTCTATGGAATGTTGCTAGCGTTGGTGATGAAGGCCTAATTGAGATTGCTAACGGATGTCAACAACTAGAGAAGCTCGACCTTTGCAAGTGCCCTGCGATTTCCGACAAGGCTTTAATTGCAGTTGCAAAGAGCTGCCCAAATCTGTCCGAACTATCATTGGAATCATGTCCTAACATTTGCAACGAAGGTCTACAAGCCATCGGGAAGTTCTGCCCCAATCTAAGGTCTATTTCTATCAAGGACTGCGCTCGTGTTGGTGATAATGGAATTGCTGGCCTGTTTTCTTCAGCCTCTTTGTCTCTAACAAAGGTGAAGCTCCAGGCACTTGCTGTTTCTGATCTCTCGGTAGCTGTTATTGGACATTACGGCAAATCAGTTACTGATCTAGTCCTTAATTATCTCCCAAATGTTAGTGAGAAAGGGTTCTGGGTTATGGGTAATGCCAATGGATTGCATAAACTGAAGTCACTTACAATTGCTTCCTGCAGAGGAGTAACAGATATTGGGATTGAAGCTGTAGGAAAGGGTTGTCCTAATTTGAAAAGCGTACACCTTCATAAGTGTGCATTTCTATCAGACAATGGGTTGATTTCATTCACCAAAGCTGCTTCATCACTTGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGCGCAAAGTTGAAGGCTATTTCTATGGTGAACTGCTATGGGATCAAAGATCTGAACTTGGTATTGTCGCCCGTATCTCCTTGCGAGTCACTTCGGTCACTAACGATCCGTAACTGCCCAGGATTCGGCAATGCCACCCTATCTGTATTGGCAAAGTTGTGCCCACAACTTCAACAAGTTGAATTGAGTGGACTTAAGGGAGTGACAGATGCAGGTTTACTTCCATTGCTCGAGAGCTCTGAGGCCGGTTTAATTAAAGTTAATCTCAGTGGTTGCATAAATGTTACAGACAAAGTAGTTGCATCCCTCGCCAATCATCATGGTTGGACTCTCGAGGTTCTTAACCTCGAAGGTTGTAAAAATATCAGTGATGCTAGCTTGATGGCAATTGCCGAACACTGCCAATTGCTTTGTGATCTCGATGTTTCGATGTGTTCAATCTCCAATGCTGGGATAGCAGGCCTAGCACACGCGAAACAGTTAAATCTCCAGATTCTTTCTCTATCAGGTTGCACTTTGGTTACAGACAGGAGCTTGCCCGCGTTGAGAAAATTGGGCCACACCCTTTTGGGACTAAATATCCAACATTGCAATGCAATCAGCAGCAGCACCGTTGATACACTCGTCGAACTTCTTTGGAGGTGTGACATTCTCTCATGA

Protein:

Promoter(3k):

>AM02G005940.1
AACAAGGACTAATTTTTTTTTCGAGTATGATTAAACCAAATCATCAGCGTTAAATTTTTTGAGGGAGAGTTTTACCTCCCATTGTGGTTCTACCCGACTCAAGAGATTAGTCTCTGCAGTTACGCGCAGAAGATACCTGATTCACACACAAAAAAAAACAAATCATAAATTAGGTGTGTAACGAGGTTGGTGGGTGTAGGTTTTGGCTCCCCGTTCTTGCCCTGACTCTCTGCAAAAAACCCAAACATGCCTTGTTTGGGTTAGAAATACGATACCCATCCTCGCCCAGACCTACTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATAATAAAATAAAGAGTTATATGTATCACAATCAATATACTAAATTAATAGTTAGACAATAATAAAATAAAATAATGTTAAAATAATATTTTTCAATTAAGAAAAGATTAAAACTTAAAATATATAAAAAAAATACTAGATGTCTGTGAACTTTGAGGAAAACTTGAATCTGACCCGAACTTGGTCAAAGTGGATTTTTCCTGTCAAAGTCGAAGCGGGTTCAGACGGGTTCTTGCGGGTATAAGTCGAGTTTGAAGGATTAATGTCTTTCGGGTATAGATGGTTGGGAAATGTCTTTCTTAGTCTTGTGGTCGGGAAAATGGATAGCCAATACGCAAAATTCTGGGAGTGTAATGATTGGATGGATAATTTTAACTTCCACTTCTTTTTTCTAGAAGTTGAGTTGTTGATGAGCAAGTTTCATTCCTCCTCTCGATCCAAGTATGTCGAACAATAAGCTAATCGAATACTTGTTTCATTTCCTTTTTTTTACTAAAATGATATTGATTCATTCAAATTGTTAGATATTACATCGATCATAATATAAATTCAGTATTGCTAAAAATATAAATGATGAATCTGTGAACAAACTCACAACACTCAGGTTTATTAGAGTACCCATATATCCATATTTGTAACTTTGAGACCATGGTCATTGGTTGAAGTTGATCTGTCGATCTGAACCAAACAAACATCGCAACAAGACGAGAAATCAAAAATGCCACACCAAGACGACGAACAACAATAGCGCCGCACTCAGGTGATGAAGTCAAGAAAAAATACGCAATAGAAACTAGATATATGTGGTAGACATTTATTTAGATAAAAAGACAAAAAAAAACAATCTACAGGGGTGATCCTAGGCACAAAGTTGAAGAGAATACAGTTAGGTTTAGAAAGAGTTGAGAGAATTTTTAACGTTTTTCCTCTCGGTTTTCTTTCATTTTCTTTTATACGTGTTTAAGGTTGTTTTACAATAATTAAAAAATCATTAAAATTTGTTGTTTCATATAAAGTTATTAATCTTTTTCCTTCCTTTAATAGTCTTTACTTTTCATTATTTTTATTTGGCTAAATTATAGTTTTGGTCCCCCTATTTTCAAAAATTCAGACATTTGGTCCCCCTATTTTAAAACTCAGACATTTGGTCCCCCAACTTTAAAAAATCAAATACATTTAGTCCAAAGAGGGACCAAATGTCTTCGATTTTTTAAAATTAGGGGACCAAATGTCTTTGATTTTTTAAAATTGAGGGACCAAATGTCTTTTATTATTAGCCATAAAAAACTGAAAATTCCTCTTGGGACTAAATGTCTTTGATTTTTTAAAATTGGGGGATCAAATGTCTGAGTTTTAAAATAGGGGGACCAAATGTCTGAATTTTTGAAAATAGGGGGACCAAAACTTTAATTTAGCCTTTTTATTTTTATGCACTTTATAATAAATAGTTAAATGTATAATGGAAATAATAGTTAACATGTTTTTTTGTCTATTTATTTAGATGAAATGACAAATAAACACCACGCAACCCAAGAGCACTTTGATAAGATAGTATGAGTCTCTCCAGCTTACCAATGGTCTTGAGTTCGAATTCAAGTTTGGGCATGCAACAGTGTTAAATCTTCTAAGAGAGAGCTTTGTCGACCATAGTGGTCCTACCCGACTCGAGGGATTAATTTAATCTCTGCAGTTACGCGCAAAAGATACCCAATTTATAACAACAAATAAACACCACGCGTACATACTGCCACTCCTCACACTCAAGTTTGAACTAGGAGCCGACGTCCCCAGGTCGTTGAAACCGCCGAGGGGAGCCAACAACAGTGAGGGACAGATAGGGATTGAGATCATCTCTATTTGCTGGACAGTTCCAGTAGGACAGTTCCCGTAACTCAAGAGGATCTGAACCCGACGGGCTTTAATTTAAACTTTAAAAATAATAAATAAATAGAAAAATGTAAAACTGAAAAGGAACTACTGTTGTCCCCCAAAGTAGCATTACTTTCCTATCAATGTCTATCCCTCAGCTCTCAACTTTCTAGAAATCTACCACCGGTCAAAAACAAACTTTCTTGAAATTTAAGAAAGTCATTAATAATTATTTATTTATTTATTTATTTCTCATCATAAAAAAATAAAGAAAGAAAGACAAAATTTTAAAAAAAATAATAAAAAACGGCATCCCTGGTTTGTGGTTTCTGGTTTGAATTGGTGGGGGAAAAGAATATAACGAAGAAAACCCCACTTTCCATTTTTAAACAGAGATTCATTGCATGTGGTAGTAACCATTCATTGTACGGGAATCACTTTCCCACTTGCATTGCACCTTACAATAAATAAAAACCCTCTCTTTAACCAACCATTAACCCAATTGTTTCTTCTCCTTCATCAAAAAATCTCAATTTCTTCTTCTCTCTTCTTTTTGCCCTATCTATTAGGGTTTCCACGATTTCATACCTTCAATTTCTCTCTTTCTCATGCAAAATTACCTTCAAGATTCAAATATCGCAATCGTAATCAACGTCTTCTTCTTGTTATTCGCTATCGTTTTTGCTCTGTTTGGAGGGTTCTTTTGTGGAAAACTGTGCGAATTTTACCTCCAGGGGTCTTTTGAGCTGTTCCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00646.36	F-box	67	105	3.50E-08
PF12937.10	F-box-like	66	100	7.40E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box
Ubiquitin Family	F-box

Gene Ontology

GO term	Description	Category
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process
GO:0019005	SCF ubiquitin ligase complex	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0005737	cytoplasm	Cellular Component

InterPro

InterPro term	Description
IPR006553	Leucine-rich repeat, cysteine-containing subtype
IPR032675	Leucine-rich repeat domain superfamily
IPR001611	Leucine-rich repeat
IPR036047	F-box-like domain superfamily
IPR001810	F-box domain

trEMBL

trEMBL term	Description
A0A2K3NF45	_

SwissProt

SwissProt term	Description
EBF1_ARATH	EIN3-binding F-box protein 1

KEGG

KO	Description	Enzyme
K14515	EIN3-binding F-box protein
K10268	F-box and leucine-rich repeat protein 2/20

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G25490	EIN3-binding F box protein 1
Medicago sativa L.	MsG0880046781.01.T01	_
Oryza sativa L.	LOC_Os02g10700.1	OsFBL7 - F-box domain and LRR containing protein, expressed
Cucumis sativus L.	Csa002310	_
Glycyrrhiza uralensis Fisch.	Glyur000058s00006183.1	_
Codonopsis lanceolata	Cl_chr01_34910T	_
Arachis hypogaea L.	AH16G36280.1	EIN3-binding F-box protein 1 like

Expression pattern