| Gene ID | Annotation |
|---|---|
| Am02G005610.1 | chromatin remodeling factor CHD3 (PICKLE) |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am02G005610.1 | mRNA | Chr02 | 24711595 | 24733349 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00176.26 | SNF2-rel_dom | 300 | 580 | 1.50E-70 |
| PF06461.14 | CHDII_SANT-like | 925 | 1055 | 5.40E-54 |
| PF00385.27 | Chromo | 101 | 151 | 3.10E-28 |
| PF00385.27 | Chromo | 186 | 234 | 3.10E-28 |
| PF00271.34 | Helicase_C | 603 | 716 | 2.20E-17 |
| PF06465.16 | DUF1087 | 833 | 885 | 1.10E-14 |
| PF04851.18 | ResIII | 280 | 460 | 3.60E-11 |
| PF11496.11 | HDA2-3 | 533 | 748 | 2.40E-08 |
| PF00628.32 | PHD | 53 | 95 | 2.20E-07 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | Others |
| Ubiquitin Family | PHD |
| Epigenetic Regulators | CHR6 |
| Transcription Factors Family | SNF2 |
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | Molecular Function |
| GO:0009536 | plastid | Cellular Component |
| GO:0016887 | ATP hydrolysis activity | Molecular Function |
| GO:0046872 | metal ion binding | Molecular Function |
| GO:0004674 | protein serine/threonine kinase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR019786 | Zinc finger, PHD-type, conserved site |
| IPR001965 | Zinc finger, PHD-type |
| IPR019787 | Zinc finger, PHD-finger |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR009463 | Domain of unknown function DUF1087 |
| IPR016197 | Chromo-like domain superfamily |
| IPR000953 | Chromo/chromo shadow domain |
| IPR023780 | Chromo domain |
| IPR009462 | CHD subfamily II, SANT-like domain |
| trEMBL term | Description |
|---|---|
| A0A1S3E5W9 | _ |
| SwissProt term | Description |
|---|---|
| PKL_ARATH | CHD3-type chromatin-remodeling factor PICKLE |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G25170 | chromatin remodeling factor CHD3 (PICKLE) |
| Medicago sativa L. | MsG0180000562.01.T01 | _ |
| Oryza sativa L. | ChrUn.fgenesh.mRNA.85 | expressed protein |
| Cucumis sativus L. | Csa014880 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000128s00010803.1 | _ |
| Codonopsis lanceolata | Cl_chr01_02300T | _ |
| Arachis hypogaea L. | AH20G25750.1 | CHD3-type chromatin-remodeling factor PICKLE like |