Gene detail

Detail information of Am02G004690.1 Annotation

Gene ID	Annotation
Am02G004690.1	peroxin 10

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G004690.1	mRNA	Chr02	19741019	19749239	+

Sequences

CDS:

>Am02G004690.1
ATGGGGTGGGGTCACCTTGGAAGACATGGCTCAGATTCCGATAACGGCGGCGACGCTGGTCCGAGCACCAGCACGGCTGAGCCACGGCGGTTCCCTCCGGCAGCTCCGCCGGAAATGATGCGTGCCGCTGAAAAAGACGATCAGTATGCCTCTTTCGTTTACGATGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACGAGAGTTGCAGTGGCTTACCAGAACGAGACGAAGCTTTTAGGGCAAATGCTTTACTATGTGCTAACAACAGGCTCGGGACAACAGACACTTGGAGAGGAATACTGTGATATTACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACCCCTGCAAGGCGTGCTTTGTTTATTGTATACCAGACGGCTATTCCATATATTGCAGAACGAATTAGTTCTAGAGTTGCTTCTAGAGGCATTATCCTTGCGGACTCGGAGTTTGCTGAAAGTTATGATGGAAATGCCCACGGGAGTGGTAGTTCCCGGATTTCTGCTGCAAGTGAGCTTTCTCCTTCTTCTGCGTCCGGACAATCTATTACAACTATGACGAAGTTGAAGGAAAAACTCAGTGGATTTTGGTTGCATGTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAATTGTTGCAGCTGGTTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATCGGAAAAGCATCAAATCAAAGACCCAGATATCAAATTCTGGGAGTATTTCTGCTGATTCAGCTTTGTGTAATAGCTGCTGAAGGGCTGCGTAGAAGAAACTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCCACCATACATCAGCAGGACACGGTTTGCCTGTTTTAAATGAAGAAGGTAATTTGGCATCTCCGGATACTGAAAAAGGAAGTTGGGTTTCTGAATCTTCATCTTCCGAGCATCATGCAACTAGCGGGGTTAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTCTGTGTTTATCATTCAGACTTCTGA

Protein:

Promoter(3k):

>AM02G004690.1
TAAATAATTAATTAAATTTTGGGGCGTTACATTTACCACCTCTAGTTGGAGTTTGTTTTAAATCTCCTAAGTCCGTATGAATTAAATTAAGCAACACAGTTTCACGTTGTACGGGGGGACAAGTTTTCTTAGTTAGATTGGATTCAACACACACGCCACACTTGCTATGTTGATTATCGCTAATTGTTATCATACCAAGACGTTGCAATTTAATAACATACCTAAAGTTGATATGACCTAATCTAGCATGCCACAGATTACAAGAGTCAATCAAATACGCAGAAGTAGAAGCATTGTTATTCAAATCAAAAATGTTAAGTACAAAAAGTCCATGATCATAATAACCCTTTCCTACAAAGACATTGTTTTTAGTTAAAACAATCTTATTAGATTCAAAGGTCACTTTGATTCCATGCTTCAGCAGTACTCCAACAGAGATCAAGTTTGCCCTTATATTAGGCACATGGAGCACGTTTTTGAGAGCCAATGTCTTTCCTGATGTGAGCTTTAGAAGGACTTTTCCTTTTCCCGAGACTGGGGCAGGATGTGGGTCACCAAGATAGATTTGTTCTTCTCCTTCCCCTACAGGAGTGTAGGAGGTAAAAGCCTCTCTGTTAGCACAGATATACTTGGTGGCTCCAGAATCTACCACCCACTTGTTCACATCAGTCGCCATATTGACCAGAGAAACGACAGCAGCGATGACATCGTCATCCTCATCATCACCTCCGCCGGCATCAGCCAAGTTGGCGTTTGCCTTAGGAGGAACCTCGTTTCTCACTCTATGCCTGCATTTAGGAGCATAGTGTCCTGGCTTTCCACAAACAAAACAAAAACCTTTTTTCTTGAAATCAGAGCCATGAACAGGGTTATGATTATTGCCCTTTTTGTTGTTCTTATGATCAGCAGATTTTTTAGAGTCGTACCTTTTGTTTGAAGACTCAGGTTTGTTTTTGTCATACCTTGAAGATTTATTCACTACCATGTTTGCTCGAGCAGCCACTGATCTAGCCTTTGATTTGTTGCTTTCCTTTCGGTTGGTATCTTCAATGATGACATGGCTCAGCAGCTCGTTCAGCGACAGTTGCTTGTGCTTGTGCTTCAGTTGTTGCTTGTAGTCCTTCCATGATTCAGGCAGCTTCTCAATCAGGATCCCAGCAACAAACTCATCAGGGAGAACAATACTTTCAGCCTTCATTTCCTCCACCAACCTGTAGTACTCATTGATCTGGGCTTTGATTTCGTCATGCTCATTCATCATCCAGCGATAGTAGTTGCTGATGACGAACTTTTGCTTGCTAGCATCTTCAGCAGTGTATTTGAGAATAAGGGATTCCCAAATTTCATTAGCCTCCTTGTAGGTGCAGTAGATGTCAAACAGGTCGTTAGAGAGAGTGCTGAGAATTGTGTGACGACACACTCTATTGGCATGTGTCCACAATTCGACCTATTTGGGAGTCACAGATGAGTCAGGTTTGGAGTCAGAGAGTGCCGCAACAACTCCGTGCATGTCCAGGAGAGAGCTTATGCGTTTCTGCCATCTACGAAAATTTTGGCCTGAGAAGACCTCAATTTTGGAGATGTCAGGAAATGGTTTTGCATAACTGACAGGCACAGAGACAGGAACCGTAACGACGGTGCTGGCATCGTTGGCAGGAGAGGAGGTGTCGCCGTTGTTGTTGGATTGATCAGCCAAGAGAAACGTAAATCCTTAAGATTGTTAGCGCTGTGGCTGAAAAGATGTGACGAACGGTACCTGCAAAAAAGTAAACGTTAGGAAAACAACCGGAGGGGTCTTGACGACGCTCCCTTAAGGATTTATCCGCCTCTACAACGCAAATCCCCCGAGGGTACAACCGGTCTCGTCTGATTACACAAAAGCGAATCAGGAATCCGAACTGGCAAGAAGGAACTGTTTAGTGTTTCAGGAAAGATAACCGAGCTGATTTCGTTGATGTATCAAGCACTACTCGACTAGCGTTTATATAGGCTCTACCGATAACTAACTCTAGAGAAAAGAGTGGAAGCGGAGCGCATAACAGCCCTCAGCTTGCGCACAAAGTAGCTTGTTTATAAACCCTCACAAGGTTTTAATATATAAAGGCTTTGGTTTCCACAAAGCCAACCAATGTGGGACTTCCCCACTTTTGTAATATCATATATAATCAATTAATTTTACAACAAAATGTTCACTGATCGATAGCAGACAATGCACATTCCCATCAAATCAACAATAGTGTTTGATATAATTGAAGGATCATGATCCATTGTAGTTAAATTTGACTTCAATCACCGCGGTTAACCTATCTAAGAATCATTGGATAAACTATTAGAGAATTCTTAGTCTTTATTTTATTTTTAAAAAATTACAAAATTAAAATTGGAGAGAGATAGACATAAATGACAACGGTGAATCGAAATCCATAATTGAAGCATGAGTCTAACTATGGAAAAACCATGATATAATACTTTTGCATCTCATGACAAATGAAATGAAAACTCCTAGATCATCTAGAAATATATATCCACAAAGGGACAATGCACAATAGAAATAACATCTATGAATATTCTCATAAGCATATGAGAGCATTTACTTTCCCCATTCACAAGGAGTGCATCTACAAAGAAGTGTCCTACACCACAAAAGTCTAGAGCTTTGAATAAACTTTTGTTGGTATGTCTTCATATTATAATAAGAGCTTAACAAACTGTTTATTGTAGCTGTGTAGAAAGCCCATGGATAGACGTAATAAATGTATTTATATTCAACGTTTGTTATTCATAACATCAAGTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCGTTTCAAATTTTTATTTTGTCTCCTTTTTTATATTTTTAAACCCCGTTTCTTTATAATTTTTTGGGCGATGGAACGATAATTAAAATGGAAGCGTTGGTGGATAACACTGACTGCGTTAAAACTGGGTTAGAACTTAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04757.17	Pex2_Pex12	46	280	3.10E-49
PF13920.9	zf-C3HC4_3	342	386	4.90E-09
PF13639.9	zf-RING_2	342	381	1.20E-08
PF00097.28	zf-C3HC4	343	380	1.10E-06
PF13923.9	zf-C3HC4_2	342	380	1.10E-06
PF14634.9	zf-RING_5	342	382	4.90E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING
Transporter family	PPI

Gene Ontology

GO term	Description	Category
GO:0016558	protein import into peroxisome matrix	Biological Process
GO:0005778	peroxisomal membrane	Cellular Component
GO:0008270	zinc ion binding	Molecular Function
GO:0016740	transferase activity	Molecular Function

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR006845	Pex, N-terminal
IPR025654	Peroxisome biogenesis factor 2/10

trEMBL

trEMBL term	Description
A0A0S3RPX4	_

SwissProt

SwissProt term	Description
PEX10_ARATH	Peroxisome biogenesis factor 10

KEGG

KO	Description	Enzyme
K13346	peroxin-10

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G26350	peroxin 10
Medicago sativa L.	MsG0180000461.01.T01	_
Oryza sativa L.	LOC_Os07g41800.1	peroxisome assembly protein, putative, expressed
Cucumis sativus L.	Csa009310	_
Glycyrrhiza uralensis Fisch.	Glyur000105s00014197.1	_
Codonopsis lanceolata	Cl_chr08_24690T	_
Arachis hypogaea L.	AH20G35030.1	Peroxisome biogenesis factor 10 like

Expression pattern