Gene detail

Detail information of Am02G003960.1 Annotation

Gene ID	Annotation
Am02G003960.1	KNOTTED-like from Arabidopsis thaliana

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G003960.1	mRNA	Chr02	15636821	15641833	-

Sequences

CDS:

>Am02G003960.1
ATGGAAGAATACACTAATAGTTCAAATCCAAATCCTAGACCAAATTTCTTGTACTCTTCAGCTAGTGGAAACCACCAAAACCAACATCAACAACATCATGATCATCATCATCATCATCATCATAATCAGCTTATGAACACTTTTCATCTTCAATCAGGTGGTGGATCAGATCACTCCTTTCAACCTGCTGTGAAAACTGAAGCTAACACTTCACAACTTCACACTCCAATTTTTCACTACCCTTTAATGAGAGGAAATCTTCACCAAAGCACTATGCATAATCATCAAGGAGGAGGAGGAGGAGGGAGTAATAGTAGTTCTAGTGAAGCTGAAGCTATTAAAGCTAAAATCATTGCTCATCCTCAATATTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTAGTGGCGCGTTTAGTTGCGGCAAGGCAAGAGTTTGAGACACGACAAAGATCTGTTAGCTCAAGGGAAAGTTCCAAAGACCCAGAACTAGATCAATTCATGGAAGCTTACTATGACATGCTGGTGAAGTATAGAGAGGAATTAACAAGGCCAATACAAGAGGCTATGGATTTCATGAGGAGGATAGAAACTCAGCTTAATATGCTTTGCAATGGACCTGTGCGGATTCTATCTGCTGATGATAAATGTGAAGGTGTTGGTTCATCAGAAGAGGATCAAGAAAACAGTGGTGGAGAAACAGAATTGGCGGAGATTGATCCGCGAGCTGAAGACCGTGAACTCAAAAACCACTTGCTGAAGAAATATAGTGGTTATTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTGCCTAAAGAAGCTAGGCAAAAGCTGCTTAATTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGATCAAAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGTCTGCATCCACATAATGCAACTCTTTATATGGATGGTCACTACATGGCTGATGGTCCCTATCGTCTAGGACCATGA

Protein:

Promoter(3k):

>AM02G003960.1
GTGCCATTCTCAATAAAATCTTTTTGCTTATAAAAAAAAAAATCAGTATGGTTTTGAGGTGAATTTGGTTGATGATAGCAAGTATTTTTTCTTCGTTTATTATATTTTGTTTTCCAATAACAATATAGACTTATTGCATCAAACCAAAATACTTCTAGCTAAGAAACACATAGTATGGGTCGTTGTATAATTTAGTCCTTTTGGTTGGTGACCGATCCAAAACAATTTATTAGTGGGGGCAAAATATAGTCTATAATATTTTCTAAAAAAAACATTCTAAATTTTTACAAAATACATAATTTCATTACAGAAAAAAATTCTAAAATACCTAAATTTCTACAAATTACATAGCTGAAAAGGTAAAATTAGTACAAACTTATTTTTTTATCTCTTGTAAATTTCTACATTTAATTTAATACCTTTTCAGCTATGGTGGCAAATTTTAATTACAAGAAATATATATAACAATTTTAGTACAATTTTTTTATCTCTTGTAAATTACATACCTAAATTTTTTTATCTCTTGTATTTTTTTAAGGTGGCAAAATAAAATTGTTAAATATATTTCTAACCAAAATAACTTTTCAAGTGGGGACAAGTGCTCCGAGTTCAACTAACATGGATTCGTCCCTGCTTGTGGTTGTTGAGAAACAAAATAACTTTTCAAGGGGCTGTTACGAATTGTAATGTGGTGAATTTCTCGAAAATAATTTTGTCACGGAGGTGATTTTATTGTAGGTAGGGATGAAATCTCAGTCTTTTTCTTAGATTGATTTTGTAAACAAATGGGATACCTTCAAACCGTTTAAGGAATGGTTTTGATACAACAAGTTGGAGTACCAATTGTAGGATCTTATATTATAATAATGTTTTGCTTCTAATATTTTTTCGTTTTTCATATCTTTCAATGAAAAAAACTTTTACACTTGTTTCAAATAGTGTATACATTACTAAATAGATGTTTTAATATATATTTTTCCTTTACATACAAGTGTGATATTTTTTAGGTTTAGTCCCTGTAATTTGTTTTTTTTTGTTTTTACCCTTCCAAATATACCATATTTTGCAACTAGTCCTTGTTATTTGAAATTCTGCAAATTTATTTGGGTATTTTTGGTTACTATAGTGAGACGGGAATAGATGTGTCAATCATCAATCATTATGTTTCTCACCATACCTATCATACCATTGATCTTTTTTGATCCTATATAATGATATTATCCAGTTTGATTACAAAAACCTGTGTTGGGAGGGAAGGGGAGGACATTTTTTCAATTCTAATATGAGGAAGCTATAAAATATCCCTAAACCTAAAGAAAGTGTGTTAAAAATATTATATTGTTACCTATCATGTTATTATTTTAATTTTTTTAAAGTCTCAAATATATTTTAAATATAGACTAATCTTTCCGATGCCCTCCCCTCCCCTCCCAAACATAGCGTAAGATCTTTCACCTCCACAAACCTTACAAAACTGAACCTTTTGCCCCACTTATTTCTTTTAACGAGATATGATCACCTCCATTACTTTCTATATTTATGAAATATCCCATCATCGCGGTTACATTGAAATCTTTCGTCATCTCAGAAAAGTAAGATGAAATAAGTTGATCCTTCGTACATGTTAACAATAGCTTGTTCTGCACCACATCCATCCTCCCATTTTGCCTCAACATATCCTTGTGTGTTACACGTTGTCATTCTCACTCATCACTCGCCTTGCCTTCCCTCTCCCGCTCTCTCTTTCTCTAATTTTTTTTCTCTACTCCTCCCTCTTCTCGCTTTCTATTGCTCGCTTATGCGCAACTAAATATAGATTAACAAAGTCTTTACTTGTCTTGAGAAATACTACCTAGTGATAAAACATGTGTAAGTATTGTATATGTACTAAAAAAGGATTCGAATCCACATCCCCCTTAACTTTTTTTTTTGATAAGCACATCCTCCTTAACTAGATGTACTAGAAAAAAAAGGATTTTACTTTCATACCCAATCTTCGAAAAATAGCATCCTAAGAAACTTGCATAGTTTAATCAAGTGAAACTGCATGTGACAATTCCAATATGATAAAATTTAATTAAGTGGAGCTACAATAAAATTAAAAAAAGAGATCCTAAAGTAAATTTATTTTTAAAACAAAGTTCTTGATGCTAGATACTTAAAATAAGAAATCATGGAAAGTGAATGCTTGTTTATATACTAGTGTGAAAGTTTGATTCAATTCAATAGATATCTTAATATCTTATATCTTAATAATAATAATATATATATAATGGACACACTCATGAGAGTCATGACACAGCACAACAGTTTCGTTTAAACTTTGCAATTTGCAATAAACAATCATCCAAGAACAGAAGAGGAAAACCAATTAGGGGGACAGACATCAGGGAATTAAAGCAAAGAAAAACCATCTTTAGCAAAAAAGCAAAAATAAAAAAATAAAAGATTCAACAACACACGGTCTTATCTCCCAAGCTATAGTATTTCTTTATTTATTGGAGAATTCTCACGATGCAAGAAAGTCTTGTCAACCACCCCATCTCCAAAGCCATTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTACAACATATCATGTGAGAGTTAGTATTGCTGGTTTCAAACTTCTTCTTCACCTTCTCCACCCTGTCAACTCTTTCTCCACCCTGTCAACTCTCTCCAAAATCTTTTGGTGCAATAATCTTTACTCATTTGAGTTATATCACCCTAACTTTTGCAACCTATTTCTCCAACTTGGACCCTTTCACCCCAACACAAAAAAAAAAAATCAAACTTGTTCCTATTGATGATGATTGTGTGGTCCTTAACCTTCATTACCAATCTCAAGTTCAACATGGTTTTTTCTTTTATTTAGGGTTTCATCTAAGTTGTTGACCATATCATAAGAAAGTAGGGTTTTCCTTTGCTTCTTTCTCATAGTCCAAGCTCTTAGTTTAAATATTATTTTCTTTCTTAAATTCTTAAATTAATTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03791.16	KNOX2	166	211	2.70E-25
PF03790.16	KNOX1	112	154	1.00E-22
PF05920.14	Homeobox_KN	294	333	3.60E-17
PF03789.16	ELK	254	275	4.00E-10
PF00046.32	Homeodomain	299	334	3.50E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	ELK
Transcription Factors Family	HB-KNOX

Gene Ontology

GO term	Description	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR005541	KNOX2
IPR005540	KNOX1
IPR009057	Homeobox-like domain superfamily
IPR017970	Homeobox, conserved site
IPR008422	Homeobox KN domain
IPR001356	Homeobox domain
IPR005539	ELK domain

trEMBL

trEMBL term	Description
A0AAN9RUH6	_

SwissProt

SwissProt term	Description
KNAP2_MALDO	Homeobox protein knotted-1-like 2

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G08150	KNOTTED-like from Arabidopsis thaliana
Medicago sativa L.	MsG0180000373.01.T01	_
Oryza sativa L.	LOC_Os07g03770.1	Homeobox domain containing protein, expressed
Cucumis sativus L.	Csa009344	_
Glycyrrhiza uralensis Fisch.	Glyur002357s00041555.1	_
Codonopsis lanceolata	Cl_chr02_17160T	_
Arachis hypogaea L.	AH16G43360.2	Homeobox protein knotted-1-like 2 like

Expression pattern