Gene detail

Detail information of Am02G002560.1 Annotation

Gene ID	Annotation
Am02G002560.1	RNA-binding protein 47C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G002560.1	mRNA	Chr02	9716047	9720443	-

Sequences

CDS:

>Am02G002560.1
ATGCAACAATCAAACGGTTCTATTTCGTCGCAACCGTCAGAGCAGAACAAACAAAGGCAACCGCCGACGGTTGCGGTGCCGCAACAATGGGTTCCGATGCAGTATCCGACGATGATACTAGCACCTCACTTGATACCGCCTCAACCTTACGCGCCGCCGCCATTGGTGTATAATAATTACCGGCCTATGCCGCACGTGACACCGCAGTATCACCACCAGCATCATGTATCTAATGGCGACAACAGCGACAATAAAACACTTTGGGCTGGAGATTTGAGTAGTTGGATGGATGAGAATTATCTCCATGGCTGCTTTGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCATAATGGTATTTCGGAGGGTTATGGATTTGTGGAATTCCATTCACATGCCATAGCTGAGAAAGTCTTACAGGATTATCCTGGAGTTTTGATGCCTAATACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACTGGAGAAAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTCACAGATACTATGTTGCATGAGACTTTTGCTAATGCATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCTAACACTGGCCGTTCGAAGGGCTATGGTTTTGTCAGGTTTGGAGATGATAATGAGAGAACCCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCGAGGAAATCATCTGGCCATCAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCCAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCCCAGTATGGTGAGATAGTTTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATGATGCTGAAGAGGCATTGCAGAAGCTAAATGGAACAACGATAGGCAAGCAAACAGTTCGTCTCTCTTGGGGACGCAATCCTAAACAGTTTAAAATTGAATTTGGCACCCACGGTCGCAGTAGTGGGCCATATTATGCCCCCCCTGTTTATGATGGTTATGGATATGCATTCCCGTCTCCTAATGACCCAATGTTTATTGGTGCTGCTTATGGGACTTACCCCGTTTATGGAGGAGGCTACCAACAACAAGTAAGCTGA

Protein:

Promoter(3k):

>AM02G002560.1
GAACATTTTGTTTAGTGCTTCTCTGTTCAGAATCATTAACCTGAGTCACATTTACTGGTTTCTCTGGAAAGCCATGAAGGGAATAACACTTGTCTTCAGTATGACCAAGTTTCTTACAATAAGTGCACTGAGGACGTCCTCCGGCACGACCTCCTCGACCACCCCCACGACCACGACCGCGTCCCCCACGACCTGCAAAATTAGAAACAAGAGCAGAAGATTCTATGTTAGTCTGGGATCCATTCCCTGCAGTTCCTTCCAATCCAGGAAGACGTATGAGGCGCCTGATAAGATCCTCTGTTGAGGGAATGTCTGATGCAAAAAGAATGTTGCTCCGTACTGACTCATACTTTTGATGGAGACCATGAAGAACATAGATCATACACACATTATCTAGTTTTTCAAGCATCTTCTTCGGGTCATTGTCGGTCACAAGGAGCTTGAACTCATTTGCTGCTGACTGAGCTTTATTAGCATATGTTATGATGTTATCTTCTGTCATCTGAAGGGTGGCTAAATTATGAATAACACCAAAGAGACGCTGGATATCATTAGAATAAACATTTTTAGCCTTCTGCCAAATATCATAACAAGTGGTGTATGAATGACAATGGACCAGCAAGGAGGGTTCAATGGATTGCCACAAAAGAGAGACCAATTGACAATCTGCTTGTTCCCAATCTTCACGCAAATCGTTACCAATATCTGTAGAATTCTTAGTGAGGTGATCTAAAAGCCTTTGTCCCATAAACCACATTTTGACAGAGGCAGGCCAATTCAAATAATTATCACCATTGAGTTTCTCTGTTGTTATAAAGGGATTGCCGGAGAAAGCATAAGACACGAGACTCTTACCTATCGATTCAGATTTGTTTTTGTCATTTTCTGAAGTTGAACTCATCTTTGACAATAATGGGAAGGCTAACCACAATCAGAGAGGAGCAGTAGAAATGCGTGGTACGGAATGAACAGTAACACCGTACGGACAAACAGGACCGCCGTACGGATGAACGGTACGCCGTACGGACAAACAACAACACTGTACGGCAAACAGAGATCTGCGTACGGATAAGTAGTACGTCGTACGGATGAACAACGCGACTTACGGATGAACAGCGAACCGTACGGATGAACAGTGACTCCGTACAGAGTGAACAGTGAAGTCGTACGGATGACAGGGACTGTATGACTTTCGTAGCACATAGGGCCGTTGAGGATGAACAATCAACGGGACAGCTAGGGTTCAATAGCGTGACGGCGCGACGGCTAGGTTTTCAGGCCCAGTAATCATAGGCTCTGATACCATGTTAAAAAGAGACGAAGAATAGAGAGACGATATTGGTTACGCATGCAGTTCGGCCAATGTTTGCCTACGTCTGCGACTACAGAGCAGCTGTAGTTCCGTCTTATTAACTGTATATGTTGTTGTGTAAAGAGTACAAGCACTAATGAGTTTAAATAGACTATACTATATGAAAACCTAACGGGCCTGGGCCAAATACACATATAAATAAATCTACTATTTACACCACATCTCAACATATAGAAAACACATAAGCAATTTAATTGATTTGGATTTCAAATTTATCAATACAGGTTTTGCACTCCTAAGTAAATAAAGAAATTGTCAGAAAAAACTACATAAATAAATAAAGACATACATCAAATAGGCCTTCTAGAATGAAGAATTATCTAAGTTACTCATTGATGTATTAGTTAAGATATAATATAAATGTTATAAATGACTGGGATTTTATACCATAATAATAGCCCAGTATTCCAAATCGTTGAGATTTCATTTTATATTTAGAAATAGGTAATAATAGGTATTTTCAGTGTTATTCAACCCGAATCGATCCAATACAACGATCGGTTCGAGTCACTCGTTGGACTGGACATGCATAAGACCCGATACAACTTGGTGTAATCTGGTGACCCGGTCGATTGGACATAGAGACCCGATCAGTGTGACCCAGTCAACCCATTTTTCCCAAACTAAATTATGTCAAGATGCTTACAAAAATGAAAGGGTTGGATTTCAAACTCGGGACCAACATGACAAGCTGACCAACCCCCTTGCCACTACATTGCCTTACAAAGGTTAAATATATACTATGTTCCTTCCATTTGAAATAAAAAATGTGTTTTTTATACATTGATAATAGGTTTGTATTTTATACTTATAAGTGTTATTACATTTATATTCTAATTATTTAATATCTCATATTTTGTATCATATTTTATAGTTATTAGATTTTATATATTTATTTTAATGAAAAAAAAAGATTTTACATATTTATTATTTAGAATATTAATGAATATTTGTGAGACCATTGTTGTTCGTTTAATTAGTTACTTATACTATGGTAATGGATATGAATTTGAAGAATGAGTTAGTTAATTATATCAAATATTGTTTGAGTTTTTTAGACATTTTTAAGGTATGGTAAAAAAAATTATAGTTCTCTGATACATGAATTTATACATATCATATCTATTTTTATTACTTTTGAAGAGTGTCACGAGTTATGCAGCCAATGACTTAATACTCTGACCATTGATCCGGTGACCCAAGTTTTGATCGATCACCGAGTCGATTTTAATAACACGAGTATTTTTTCATCTTTGTGACTTGTGAGGGTTTTGGTTGGTGTCTCGGCTTGGACACCACCCTACAAGAGTATTATTATTATTGTGTTTTTTTTTAAAAAATAAATACGCCTCATAATTAGATCCGACGGTCAATATAAAACAAGCATTTAATCGAACGGCAAGACGACGACCGCGTTTACGAAACCAACCCATCATTTGTTCACCCTACCCCTTGCCGCGCCCTCCTCTCTCTGCTTCCCTATCTCTCTCTCACTTCCTTCAGATTCACTCTTTCTCTCTCTACCACCATTCTTTCCATTTTCAGCCTTTCACATTTCAATCCACGGCATTCATTTTCAGCGAGCGTGTGTCTGAGAGAGAGAGAGTAGTGGCGGTTAATTAATTAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	90	154	4.10E-50
PF00076.25	RRM_1	180	249	4.10E-50
PF00076.25	RRM_1	284	347	4.10E-50

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006397	mRNA processing	Biological Process
GO:0003729	mRNA binding	Molecular Function
GO:0005829	cytosol	Cellular Component
GO:0004852	uroporphyrinogen-III synthase activity	Molecular Function
GO:0006782	protoporphyrinogen IX biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0AAN9PVE4	_

SwissProt

SwissProt term	Description
RB47C_ARATH	Polyadenylate-binding protein RBP47C

KEGG

KO	Description	Enzyme
K25102	tRNA selenocysteine 1-associated protein 1
K13201	nucleolysin TIA-1/TIAR

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G47490	RNA-binding protein 47C
Medicago sativa L.	MsG0380017119.01.T01	_
Oryza sativa L.	LOC_Os09g28810.1	RNA recognition motif containing protein, putative, expressed
Cucumis sativus L.	Csa003579	_
Glycyrrhiza uralensis Fisch.	Glyur004390s00040490.1	_
Codonopsis lanceolata	Cl_chr02_50050T	_
Arachis hypogaea L.	AH17G26580.1	Polyadenylate-binding protein RBP47C like

Expression pattern