Gene detail

Detail information of Am02G002250.1 Annotation

Gene ID	Annotation
Am02G002250.1	white-brown complex homolog 19

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G002250.1	mRNA	Chr02	8394975	8398943	-

Sequences

CDS:

>Am02G002250.1
ATGGCGAGGCTAGAGAGAACAGGGACAAATAAGAGCCTAGAGAGTCTAATGGAGTCACACATGGCAGCTGGAACCGCAAAAAATGTGAACCAAGTGAAGCCCCAAAAGTCGATTCCTGGCTACGGCCTAGAATTCAGCAATCTCTCATACAGTATCATTAAGAAGATGAAAAAGGATGGAGTTTGGATTAAGAAAGAAGCGTATCTTCTGCATGATATCTCTGGACATGCAATAAAAGGTGAGATCATGGCAATCATGGGTCCTAGTGGTGCGGGAAAATCAACCTTTCTTGATGCCTTGGCCGGCCGAATTGCAAAAGGGAGTCTAGAAGGATCAGTTAGAGTTGATGGAAAGCCAGTAACTACAAGCTACATGAAAAGGGTGTCATCATATGTAATGCAAGATGACCAGCTGTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCGGCAGAAGTTAGGCTTCCTCCTTCCATTTCTAGGGATGAAAAGAAGAAGAGGGTTTATGAGCTTCTTGATAAATTGGGCTTACAGAGTGCCACACATACCTATATCGGTGACGAGGGAAGGAGAGGAGTGTCGGGAGGGGAACGACGAAGGGTATCTATCGGCATAGAGATCATTCATAGCCCATCACTTATGTTTCTGGATGAACCTACCTCAGGACTTGATTCCACAAGTGCTTACAGTGTAGTGGAAAAGATTAAAGACATAGCTCAGGGGGGTAGCATTGTCCTTATGACCATACATCAACCTTCCTATAGAATTCAAATGCTCCTGGACAAGATCACCGTCCTCGCAAGGGGGAGATTGGTATACATGGGAAGGCCAGATGCACTGCATGGTCACCTTTCTGGATTTGGAAGGCCAGTACCTGATGGAGAAAACAGTATTGAGTATCTCTTAGATGTTATAACTGAATACGATCAAGCAACGGTTGGACTTGACCCCCTTGTTCAATACCAACGTGATGGCCATAAACCTGATCCAGCAGCCATGACACCGGTTCCTAAAACTCCAACTTATAGAAGGAATACCCCAGTTTCTAAACACATGATTAGCCTACGTAGCCAAGGATTTGTTGCTGGAACACAACAACCTGATTCTGCACACTTTGGTTTAGATGATGATGATGATGATGATGATGAGAACTTTGATAACTCCCTTGAAAGGAGAAGTGCTCGAACATCAAGGAACATAGTGAGTAGTGGTGTTTATCCACCTTTGGCTTCTCAGTTTTACAAAGATTTCTCAGCCAAAGATTTCTCTGTTTGGCTTTACAATGGTGTAGTAGGAACCCCACGTCGCCACCCATCATGGACTCCAGCAAGAACCCCAGGGCCAGGCTGGACACCTGCCATGTCAGGAGCAACAAGTTTTGTTTCTAACCAACACTCTACAGCTTCTTTCCCGGATCCTTTTAATCTCCAAAAAACACCTGCGGCAATGGTTAGCCAGTCTATGGACTACTCCGCAACTTCATATGCTCCTTCAGATGGAGAGTTTGAGATTGAGGAAGTAGTGCTTGATGAAGATGAACCAAACCTTGGATCCAAGTATGCCAACCCGTGGTTGCGTGAGGTTGTTGTGCTCTCATGGCGAACGATACTCAATGTAATTCGCACCCCAGAACTGTTCGCCTCCCGTGAGATTGTGCTAACTGTTATGGCACTTGTCTTGTCCACCATATTCAAGAATCTGGGAGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTATATCTTTGCAGTGTGCCTTGTTTTCTTCTCTTCCAACGATGCAGTCCCATCTTTTATCATGGAAAGGTTTATCTTCATCAGGGAAACATCCCACAATGCTTACCGCGCTTCTTCATATGTCATTTCTTCCCTCTTTGTTTACCTCCCATTTTTTGCTGTTCAAGGCCTCACATTTGCTGTCATTACCAAATTAATGCTTCACTTAAAAAGCAGTCTCTTCCATTTCTGGATCATACTATTTGCCTCCCTCATTACTACAAATGCTTATGTGATGCTTGTTAGCGCACTTGTGCCTAGTTACATCACAGGGTATGCAGTAGTTATTGCCACAACAGCACTTTTCTTTTTGACATGCGGTTTCTTCCTCAAGCGAACTCAGATACCTTCCTACTGGAAGTGGCTACATTATATTTCAGCAATCAAATACCCATTTGAGGGATTGCTGATAAATGAATTTAAGAACGATCGCGGCTGCTACACCGGAGCGAAAGCAGATTTATCCCCGGGACCTTTAGGTGACGTGAAGCCCAGCAAACATCACAACGCCACTCTACCCCTTAACTGCTTATTAGGAGAGGATGTCTTGTCTACAATGGATATTACAATGGAAAACCTGTGGATTAAATTTGTTTTGATGATTGACAAAAGAAATTCTAAAAGGTCAAGATTGCAAAAAGCGGAAAAGGAAATCAAGCTTTCACTACAAGAAAATCGACGATTTCCGACGGTGATTTCCGTTGCAAATGCAACGATTTTCGTCGCAAATTGA

Protein:

Promoter(3k):

>AM02G002250.1
AGTCTCATGACTTAAAACTTATATAATCCTGGTGTTCAATACCCAAAACATAAATAGCGGAAACGATCTACAAAGACAACAAAAGGGACAAAGGCCTAAACATAAAGCTGAATCTTCAATGACTTCATAAGTCACACTTGCTAACCGTGCTTCTTCGCCTTTGCTTTTCCCTGTTTCTCTGTAAAAACCACAATAATGAAGGGTGAGATAAACATTATCTCAGTGAGTCCTATCGAGACCCCTTACTAACTCTAGAGGTTCATTATGCTTTGTACTTTGAACATCATGGCCCTAATAAGCGACCATGTGGACATATTTTTCTTTATTCCGTCTTGTAGCCCTAATAAGCGACTACATTTCATGTCTTATCTTTCCTTTAACTTAGCACAACACCTCGAGCCTACCTTATCCGGTTATTTCTTTGGCTTTTGGTGAACCCAATCCACTAACCATTAATTAGTGGGCAAGCCTCATGGGGCCTAGGTTTTGGGGCTCATGACTTCCCCTCCCCTAGTATGCTAATCCTTAGGGTCGTCACCCTTGATATACATATATTATTATGTATGCCATTCTTTCCTTTATGGAAAGTAATCATTCCTTTTCTCAAGGGAAAGTAACTTGACTTGTATTTACATGGATTGAGAGTTTATATATAACTTGTATAGACTTACAATCAATTATCTTAACATGACTTGTTTGGACTTATAGTCCTTTATCTTGACTTGTATGGACTTATAGTCCTTTATCTTGACTTGGCTTGTGTACACTCGCGCTTACTAATGTACGGTTTCTTCACAATTTCATAACTCATGAATTTGATCTCAAACATACTCAATTGCATGATATTCAAGCATTAGAATCATTAGGAAACCTTGGGGAAATGATTAGAAGGATTTTGGAATCATTTGGAATGGACTAAGGCATATTTTAAAAATGAGTAACAGAAGCTTCCGCACTGTCCGTGCTCCCGAGGCACACGACCCGTGCGTGTTTTGAAATTTTAACATTTATTAACCGAACAGAGCGCACGGTCTGTGCCATGTCTTAAAAACTTTCCAGGTTTCCTGCGAACGATACGCACGATCTGTGCTCCTGGGGAGCACGATCCGTGCGCGTTCATCAGTAGCCTAGAATTTGCTGTTTTCTCGTATTTTGTCCATTCCGTTCGTTCCGAATACCGTTCCGATCGATTTCCTAATACAACAAATAGTATTCCAGTCCAGAAAACAATCAATACATCAACCAATTCAAACAATCACAATGCCAATCAATCAATCGTATAAATTATCGTTAAAAGCGGTTTTTGACTCGATTCGATTTTTGAAACGAAACGCGAGACATGCAAACTCAGAAATGACAAACTTCCCTAAGCGAGTATAGAACTCACCGTGTGGTGATGAAAATCACACAACAACAATCTACGGAGTCCCCACTCAGAACAAAACCTCTCGAACAATCCCCGAAATGCTCCTCACTAGCGAACTCAGCTACTATGTCCTCTCCAACAGCACCTAACTCGAAATGTAGCTCCCTGAACTTGCCTAAAAGACACCCCAACTGAAATGCTATGCCTCAGACCCTTTGTGGAGCTCTAGCCGAATCACAAACACAGTAGGAACCCAACTTTCCTCCAAGGTGGAGCTTGGGTGCAAAAATGGTGATTTGGGAAGGGAAGGGGTGTATGTGCTGTTCTTGGTATCAATGGGAAGAGGGGAGGGAACTGATCAAGGTGGTGTTAAAAATTGTAACATGCATTCAGAACTCATGGTGGATCCTCCCTCTTCTCCATTGGAAGCATAAATACGGCAAGTCTTGCAATATTTTTTGCAATTTTCCCATCACATTATTAGATTAGATTATGTACGTGTTATGGTAATAAGTAAAAGGCCTCAACAAATATTTACACCCCCCTACGAGGCCCAATAGCAAACCGGCCCATGACCAGAAAATCTAGCCCAATCGACCAACGGCTCAGATAACTCGGCGAGATCTGACGTCTCAAGATCGTCAGAACATACATCACACAAACTCTATAAATACCACATTCAATACTCATAAATGTAATTAATTTTTCTCCAACCACCACATATTTACTCAAACACTGACTTGAGCTTTGGAGTGTTATTGCAGGTACAACACCACCACGTCAAGATCGAACAAAGACCACCATCTCAAGATCGAACAAAGGCCACCATCTCCAGATCGAACAAAGCCGTCACTTTAAGATCACCACATTATCAAAGATAAAACACTTACTAACTACTTCGATCTTAATCATAAAGCTCGTAAGTACAGTACAGAACACTACGTCAGTTTGATAAAAAAAAGATTAATTATGTAAGTGCTCATCATGGATATATATATATATATATATATATATATATATATACTATTATTAAAAGTATGCGAGGACAGCATTGCCGGCACCAAATGTTATATTTATATATGCGTGTAATTGTAGAGACTAATATCTCGAGTCGGATAGGACCACAATAGACGGCAAATCTCTATTCAAGAGATTTAATACTGCTGCATGTTCAAGGCTGAATTTGAACTCTGGACCTTGGTTAAGCTGAACGATCTCATCCGAGTGATGTTGACTATCAAATGTTATATACAGCTGTGAAGTTTGAGTTAGGCAACAATAAAAAGAATTAAAATAGTCTCTTGTGCTGAATGAAACAATGCAATGTGTCACTCTTCGGTAAAACCAAAGCAAATTTCAAGCAAAGTCCAAAGGGAAACAAAAATGGATTCCACGAAACCAATGTTGCCGCTTCATGTTTTGTTTTTTATTCAATTCACAATTGTCTTCTCCAATATTTACAACGTTCCTTCCATCATGATATCACGTTATTCATTGATTTGCTTTCATTTTTACAATCACCTTTTGTCCGTATTCAACCTCTGCCTCTCTTCTTATAATGATCCCTTTTAAAGCTCAACTTTAGCGCTTTAAAGAAGGGTCGAAAGTGGTTGCTAAAGTTCACTGCAAGTGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01061.27	ABC2_membrane	529	735	8.70E-36
PF00005.30	ABC_tran	70	222	2.20E-28

Gene family

Gene family	Subfamily
Transporter family	ABC

Gene Ontology

GO term	Description	Category
GO:0009610	response to symbiotic fungus	Biological Process
GO:0009877	nodulation	Biological Process
GO:0071944	cell periphery	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0042803	protein homodimerization activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR013525	ABC-2 type transporter
IPR017871	ABC transporter-like, conserved site
IPR003439	ABC transporter-like, ATP-binding domain
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A2Z6LGW3	_

SwissProt

SwissProt term	Description
STR1_MEDTR	ABC transporter G family member STR

KEGG

KO	Description	Enzyme
K05681	ATP-binding cassette, subfamily G (WHITE), member 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G55130	white-brown complex homolog 19
Medicago sativa L.	MsG0580025586.01.T01	_
Oryza sativa L.	LOC_Os09g23640.1	ABC-2 type transporter domain containing protein, expressed
Cucumis sativus L.	Csa004646	_
Glycyrrhiza uralensis Fisch.	Glyur000074s00005511.1	_
Codonopsis lanceolata	Cl_chr01_25360T	_
Arachis hypogaea L.	AH05G29050.1	ABC transporter G family member 19 like

Expression pattern