Gene detail

Detail information of Am02G002180.1 Annotation

Gene ID	Annotation
Am02G002180.1	_

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G002180.1	mRNA	Chr02	8204743	8218771	+

Sequences

CDS:

>Am02G002180.1
ATGGAGGACTCAATGGAGTTGAGTGTGAGCGAGCTATTGAAGGAAGTCCAAGTGGATTACTCGCTTCAGCTTCCTAAGCTCGTCGACGACTCAATCTCCACCATCAAATCATCCATCGATGAAATCCCCAACGACTTTAAGGTAACTGCTGATATGTCACCGAATTTTGTTAGGGATATTGGTGCTGATAAGGTGGAGTTCAAGTTTAAAAAGCCAGCTTTTATGAAGATTGGGGGTAGTTACTCCATACAGTGTCTTGCTAGGCCAGAATTAAACGTGGATCTTATTATTAGATTGCCAAAGGAGTGTTTCCATGAGAAAGATTATTTGAACCATAGGTACCATGCCAAGAGGTGCCTTTATCTATGCTTGCTGAAAAAGTATTTGGAGACCTCTTCATCTATAGATAGGGTTGAATGGTCAACTCTGCAAAATGAGGCCCGAAAGCCTTTACTTATTGTGTATCCGGCTGCAAAGATTGTTGAAGGTGCTGGTATTTTTGTGAGAATTATTCCATCAGCAATGTCTATATTTAGCATATCCAAGTTAAACATGAAGCGTAATAACATTCATAATTTGAATAATGGGACTGCTGTTCAAGCCACACCAAAGTATAATTCCAGTATTTTGGAAGATATGTTTATAGAGGATACAGAATTCATCAACAAATTTTTCCTTGAATGGAAGGAACTAAGAGAGGCTTTAATCCTACTTAAGGTATGGGCTCGACAGAGAAGTTCAATATACGTTCATGATTGCCTAAATGGATATTTACTTGCCGTCATACTGGCATATCTTGCTTCAAAGCAACATATTAGCAAGTCAATGAAGGCATTTGAAATAATTCGCATCACCTTGAACTTCATTGCTACTTCAGACACATGGAGCCGAGGTCTCTACTTTCCAAAGGAAGGCCAGAGCATAATTACTAAAGAGGAAAGGATGCAACTAAAAGGTTCCTTTCCAGTTGTCATAAGACCTCCATATGGGGGATTCAATTTGGCTTTTCGAATGTCTAAGATTGGTTTTACTCAGCTTCAAGACGAGGCTGCTTTGACTCTTAAATGCATGGAAAAGTGTAAAGATGGTGGTTTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGATTATTGTGTGAGATTAAACTTCAAGGGACAGAAGGAGGTATCTGCATCAGGGTTTTGTTTGGATGACGAGTGCTGGAGATTGTATGAGGAGAAAATACGTGTTATATTAGCTAAAGGGTTGAATGATAGAGCAAAATGTATTCGAGTTATATGGAGAAATGCAGAATGCCAGTGGAGCGTAGACGATGGTTTGTCAGTACTTGATAAAAAGCCCTTGTTCATAGGAATTTCAGTCAGTAATTTGGAGAAAGCATTTAGGGTGGTTGATATTGGTCCAAATGCTGAAAGTAAAGAAGAGGCTCTTGAGTTTCGAAAATTTTGGGGACAAAAAGCAGAGCTTAGAAGATTCAAAGATGGTAGAATTGCTGAAAGTGCAGTATGGGAAAGTCAGAAATGGGAAAGACATCTGATTATGAAAAGAATAGCTGAGCATGTACTTAGTCGACATCTTTCTCTATCCAAGGAAAATATTGTGGTGGTTGTTGATCAACTTGATTTCTCTTTGGGTCATGGTGCTCGAGATCCTATTACCCACTCTGGAAGTTTGCTCGAGGCATTTGATGTTCTATCGAAGCGTTTGCGTCTCATTGAAGACCTCCCTTTGAAGGTGTCTAGTGTACAACCTTTAGACTCTGCCTTCCGGTTTACATCAGTCTTCCCTCCTGAACCTCATCTTTTAGCTAATGAAAAAATTGAATCTCTCAGACCAAATAAGTTGGTCCCATCATGCATTCAACCACTAGAAGTTATGATTCAGCTAGAAGGTTCTGGGAACTGGCCAATGGATGACATTGCAATTGAAAAAATAAAATCTAGTTTCCTTATTCAAATTGGAGAGAGTCTTCAAAAGAAATGGGGGATGACATGCACCGCAACTGAGGATGATGTGGATGTCTTGATGTCTGGATATGCATTTCGTCTTAAAATTTTGCATGAGAAGGGCCTTAGTCTACTTCAAAAAGAAATTGGGAATGATAAAAAAATGCGGGTGTCTTCTGCTGACAAGAAACTTTTTACCCATAGTCAACATGCTAGCATGATCAATGGATTACAAAGTCGTTACCCGATTTATGGACCAGTAGTTAGACTAGCAAAACGTTGGGCTGCTTCACACCTATTTTCAGCTTGCTTGGTAGAGGAGGCTGTTGAGCTTTTGGTTGCATATCTCTTTCTTAATCCGTTGCCATTTGATGCTCCCTGCTCACGGATCACTGGGTTCTTAAGGTTCCTACAGTTGCTCGCTAATTATGATTGGACTTTTTCTCCCCTGGTTGTTGACATAAATAATGACTTGAACCAAAGTGATGAGAAAGAAATAAATGATAACTTTGAGCTAAGAAGAAAAAGTGAGGGAGAGAATGGACAAAATGTAGGGCCAGTGATGTTCTTAGCTACAGTTTATGATAAAACATCCAAGGCTTGGACGGGGTTATCACCTAGTGCACTGGAACTTAAAAGGTTGGTTGCTTATGCCCGAAGCAGTGCAAATTTGCTAATGAAACTAACATTTCATGAGGAGATTGGTCCATATAGATGGGAGTGCGTTTTTCGAACTCCTTTGAAGAATTATGATGCAATAATTACTCTCCACAAGGACAAACTCCCGTATCCCCAAAGGCTTCTCTTCTCATCAGAAGTTGATCACGGAACACAAGTTGCTAAAGGACATGCTAGCAAGTGCTTCCAACCTTTTTTGTTACCTAAAGATTTGAAGGGTAGGCCAGAGCAACTTAAAAATAAGTTGCTAGTAGACTTTGATCCATCAAGGTGCTTTATCAGAGATTTAGAGAAAGAGTTCTCCACCACATTCCAGATATGGCATGATTCTCTAGGAGGCGATGTTATCGGTCTAACGTGGGGGAAATCACATTCTTCCAAGAAGCGGAAGCAAGAGGAAGTAGTTGAGGAAGGAGCTGACCCTCAGAAAGTGTTAAAAGGAGTAGGTGAAGTTGGAAAAGGGTTTGTTAGGAGTATCTACTTTCTCAAGCCCCCTAGACATAATTAA

Protein:

>Am02G002180.1
MEDSMELSVSELLKEVQVDYSLQLPKLVDDSISTIKSSIDEIPNDFKVTADMSPNFVRDIGADKVEFKFKKPAFMKIGGSYSIQCLARPELNVDLIIRLPKECFHEKDYLNHRYHAKRCLYLCLLKKYLETSSSIDRVEWSTLQNEARKPLLIVYPAAKIVEGAGIFVRIIPSAMSIFSISKLNMKRNNIHNLNNGTAVQATPKYNSSILEDMFIEDTEFINKFFLEWKELREALILLKVWARQRSSIYVHDCLNGYLLAVILAYLASKQHISKSMKAFEIIRITLNFIATSDTWSRGLYFPKEGQSIITKEERMQLKGSFPVVIRPPYGGFNLAFRMSKIGFTQLQDEAALTLKCMEKCKDGGFEEVFMTKIDYAVKYDYCVRLNFKGQKEVSASGFCLDDECWRLYEEKIRVILAKGLNDRAKCIRVIWRNAECQWSVDDGLSVLDKKPLFIGISVSNLEKAFRVVDIGPNAESKEEALEFRKFWGQKAELRRFKDGRIAESAVWESQKWERHLIMKRIAEHVLSRHLSLSKENIVVVVDQLDFSLGHGARDPITHSGSLLEAFDVLSKRLRLIEDLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIESLRPNKLVPSCIQPLEVMIQLEGSGNWPMDDIAIEKIKSSFLIQIGESLQKKWGMTCTATEDDVDVLMSGYAFRLKILHEKGLSLLQKEIGNDKKMRVSSADKKLFTHSQHASMINGLQSRYPIYGPVVRLAKRWAASHLFSACLVEEAVELLVAYLFLNPLPFDAPCSRITGFLRFLQLLANYDWTFSPLVVDINNDLNQSDEKEINDNFELRRKSEGENGQNVGPVMFLATVYDKTSKAWTGLSPSALELKRLVAYARSSANLLMKLTFHEEIGPYRWECVFRTPLKNYDAIITLHKDKLPYPQRLLFSSEVDHGTQVAKGHASKCFQPFLLPKDLKGRPEQLKNKLLVDFDPSRCFIRDLEKEFSTTFQIWHDSLGGDVIGLTWGKSHSSKKRKQEEVVEEGADPQKVLKGVGEVGKGFVRSIYFLKPPRHN*

Promoter(3k):

>AM02G002180.1
GAACCCTCTTTATCGGGTCTCTTTCTAATTTGGTCTTTAAATTATATAAATACAATAAATAATCTCCAAAGCAAAACTATTAATTTTTTTTTTCAAGAGGTCTGCACAATGGCCACATATAGGGAAAATGGAGAATGGGAGTACCGTATAGCGGGTTCGAACACGAGAGCAGCCGAAAGATGTTCCTAGCTCCAACCCAACTGAGCTACACCACTGGGACCAAAACTATTAAATTTAGAGCAATGATATATGGTGAAAGGTATTCCGAAAATGTAAGAAAGGCATTCTTTAAAGTTGCTTTCAATAATAAGTATTACTCTTAAATTTATTAAATTAGTCTCTCAACTATCATTCTCTCTCCTATTTTGAGAATATTTAAGCCTTAAGGGACCAACTAATAGATTTAAAATATAGTTTAGAAACTATTTATTGTATTTTTATAGTTCAAAGATTAAATTGAGAGTTTACTCTTAATAAAGTATTTCATAAAGTTCGTCGATTATGAAATTAGTCATTACCAACATAAAGAAAGCCAAACTAGTAGGTGGTAGTTACTCTCCATCTATTCAAAATTTTTGAATTTTTATTTTTGGACCAAAACGTCGGCACTTTTATCTTTTTTTTGACCAACTAAAAATCTGTATCCTAAAATAGTAATTATTTATTGGTTTAAATAAGTTTTTATTCTCTGCAAAATAATTGTTTTTTGTAAATATGTGTCTAACATATTTACATGTGGACGTTGACCAAGTCTTGTTTGACTTTAATGTCATTACTTTTTATTTTCTTCTATTTTTAATTAGATTAATTTCCAAAATTAAATATAAATTCATCCCCCGTTTCATTTCTTCAATCCTCCCTCCGCCGGCTTGCTTCTCCATTTTTTCTGCTTTCCATTCAACCTTCACTTTTTCCACCGATTATTGCGTTGATCAGAATACGTTTTTCAGTAGCGTCATTGCAATTGATAAGCTTCTTAACTATTTCAAATTTTCAACCCAAAAGAGAATGTTCAGAGAGAAGAAAGGATGTAACCCCAAAATATTCCACACCCCATTCATTGATACTCACCCTTTTTTAAAGAATGTTTTCTGTTACGGAAGCAATATATCTGAATTTATAAAACCTTCATGTATACTCAATGTTAGGTTATCAGCGCAATGCGGAAGCAGAAGATCGAGACAATTGAGAATTAAAGAGAAGTGAGTAAAATAGCAAGAAAAATAACACAAAAGATTTACGTGGAAAACTCCTTAATGTGAGAAGTAAAAAACCACGGGCGATTACGAGCAAAGTTCCACTATGTAAAAGAAAGAGTACAACAAGTCCTCTTATTCAAAGAGCAATATTTTCTCTCAATATCTCCTAAAGTACTCTCTCAAATGGAACAAGAATTCTCACCAAAATACACTCAAGTGTATGTTACAAAGTGTGTTTTATTGTTTTCTTCATGTCTCTAATCACAACATATACTTGCCCTATATATAGCCTCCATTCTTCAATTCTTAATGATGAAGCAAAGCAACACATGGCAAGCAAGTAGGAGGTGTAAACCATTCAACATATGTGAGCATGCAAGCAAGTAGGAGGTGTGAACCATTCAAATATGTGAGCATGCAAGCAAGTAGGAGGTGTGAACATATGTGAGCATGCAATGCTTGGAGGCAATCCTTAATCACAAAAGAATAAGGTGCCGTATATTGCTAGAGGAAACTTCACAATTAAGGACTTGACCACAAATAGCTTATAGATGAAGGAATTGAATGAGAGCCACATAATCCAACACTCAATTTGACATCAAGAATGAACTTATGAACTTGGGAGTAATAAGAATGCTAGCTATGAAATTTTATCCTTGATTCTGGATCCGAATAAGCATATCAATCTCACTGGATGTAGTTTTTTTTTGTTACCATGTTATTGGTGCGCAGTTTCCACCGGCTTTGCCGATGACTAGTCTAGTCTGGGGAACCTGGCTGGCCACGTGTATACCCGGCTTTGCCGGTCCGTGTGGTTCTCCCCTCCCAATAGAGTTTTTGCCACACCCAATATTCGAACCCGAGACCTTGGAGAGGAGTCCAAACCCAGTTACCACTTGGACCGATCCTTGTTGGTTCACTAGGATGTACTTGATCAAGCTTATAATCCCATCCCAATTTCACAAGTAGGAGCCAAGTCAGAAGTCCATGCATGAATATAATAACTGTTGATATACATAAGATGCCAAGAGTGTGCCCAATGAACCCATTTCCAACCCATTCACACCATTATACGTCGTGATAATTGGATACCCATTAATCATTGTTAACCAACGAGCTATTATGTACCCATAAAATCGAGAATTCAAAGAAACCACGGACTTGTGAAGCATTTTATCAAATACAAGTTGTGCAATCCCCATGGGTATGCCTGAATATGGACATGGGGTTTTGCGCAACACAGATCCAAGATAGAGAGAGTTTGCATTGAAGTTGAAGCATTTGCCTAATGACCCACTTTTCCAGTTGATGTTGTTGGCCTAATTCTTACCAAGTTAGGCAAGGTTAAAAATCCATGGCCGAATATTGATGCTCACATTGGAGTGCAACTAAACTACTATGGTCTAACTGAGGAAAACTATTATAAAGGCATTATAATTTTGTGGAGAGGTAGAGGAAAGAATTTGGGGTTTTGGTGAAGAGAGAGAAGAGCATATTTAAAAAAAAGTTATTTTGTAGGGACTATTTTAAAAAAAAAATGCAAAGACTTATTTGAAAAATCGTTATATTTGTGGGGACAAAAAACATATTTAAACCTTATTTATTTTATTTTTTACGGGTAAAATTGTAATATTATCCATCACCAAAAAAAACTTAAGTATGTGTCATCTGTTATGTAAACCTCTATTTTTATATTTAGCATAAATAAACCCCAAACTATTGTACAAAAAAAAAAGCATAAACCCTAAACCCCTAGTCGTTATTCATTCTACAGGTTTCGTTCTCCAGTACAATCAAAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF17405.5	Nrap_D4	557	731	1.30E-45
PF17406.5	Nrap_D5	734	885	1.80E-45
PF17404.5	Nrap_D3	376	531	7.90E-40
PF17403.5	Nrap_D2	231	372	3.70E-32
PF03813.17	Nrap	93	217	4.00E-32
PF17407.5	Nrap_D6	900	1038	2.20E-20

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	Molecular Function
GO:0030686	90S preribosome	Cellular Component
GO:0032040	small-subunit processome	Cellular Component
GO:0006364	rRNA processing	Biological Process
GO:0006730	one-carbon metabolic process	Biological Process

InterPro

InterPro term	Description
IPR035371	Nrap protein, domain 6
IPR035370	Nrap protein, domain 5
IPR035369	Nrap protein, domain 4
IPR035368	Nrap protein, domain 3
IPR035367	Nrap protein, domain 2
IPR035082	Nrap protein domain 1
IPR005554	NOL6/Upt22

trEMBL

trEMBL term	Description
A0A1S2YYT0	_

SwissProt

SwissProt term	Description
NOL6_XENLA	Nucleolar protein 6

KEGG

KO	Description	Enzyme
K14544	U3 small nucleolar RNA-associated protein 22

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G63810	_
Medicago sativa L.	MsG0580024961.01.T01	_
Oryza sativa L.	LOC_Os12g06910.1	nucleolar protein family 6, putative, expressed
Cucumis sativus L.	Csa010816	_
Glycyrrhiza uralensis Fisch.	Glyur000079s00008948.1	_
Codonopsis lanceolata	Cl_chr03_20070T	_
Arachis hypogaea L.	AH12G13340.1	Nucleolar protein 6 like

Expression pattern