Gene detail

Detail information of Am02G002150.1 Annotation

Gene ID	Annotation
Am02G002150.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am02G002150.1	mRNA	Chr02	8015554	8017281	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM02G002150.1
TTTTTTATTAATAATACACTTAACTATTTATTGCTGAGAGAAATATACGTAAAATGAACTAACAAATAGTAGTTAAGTGTATTTTAAGAAGAAAAAAATACTTCAATCAAAACTAACAAAATTTATTAGTGTTCTTAGTACGTGTAAATAAACTTAAACGATGACTATTGTGAAATGGAGAGTGGAGTAAAGGGTAGAAGCATTTTTTTTTTGTAATCAAGGTATTCTCCGCGTACGCAACTGTAGAGATTAATCCTTCGAGATATTGAGATCCATTTAAGGAGTTGATCTCTCCCACCAGGTATTTTTTCATACGCACCAGTTAATAATCGAATCATTGACCAAATGGTTAATGAGCCTAAGTACCTAACACTTGTATTTTAATCAACGAAGTAAGTGTATTTTATTTTATTTAAAAAAGATGAAGTCATTTAGACTAACGCCGACATTTTTCTTTCGCACGTGTATGATGTAAAATAAACCTTTTTTTTGGTGGGAAATATCTAACAGTAGACTAGATCGTAGTACGAATACGAAATCCCTCACGGTCATGGTTTAACGCGTTGGTGGTAACTGACGACTAACTATTTTATTTAACTAATAGTTAAAACCAGCTGGAAACTCTTCTTTTTTTTAATTTTTAAAAAATATATATTTTATCGTTAAGAATTAAGATTCCGCGGGTGCCAAACAAGAAAGGATCACGCACTAAACATAGAATAGAAGTAAAACACAGTCTTGTATTTGTATTAATTTTTTTTAGGCTTAATTACAGTTTTGGTCCCCCTATTTTTCCCAACTCACGATTTTGGTCCCCCAAGTTTTAATTTCACGAATTTGATCCCCCTATTTTCCCAACTTGTAAAATCATAGTCCCCCACTAGTCTGGTCAAAATTGATGTTGTGTTGACTGCCACAAAATCTACGTGGCTGCCATGCTGGCATGCCAAAGTGGATTAAAATTAAAAAACTTATATTTGTTTTCTTCCTTCTTTCGCACAGCTTTCTTCCTTCTTTCGCACAGATCCATCTCCTCCATCTCCTCCATCTCCTTCATCATTTCACTCTCTCACCAAGAACCCTGACTTCGCTTTCCTCTCCCCCCATAGCCACAAATCCCCTCTTCTCTCTCACGGCGCCGTTTTGCTCTCTCTCCCCCTCACGATGTCAGCCGTTTCCTCTCTTCGCCTCTCACTAGATCGATCCTCTTCTCCTCTCAACACCGTTCAATCTCTCGCCTTCCCCCACCCTAGCTTCGTTTTCTCCTCACCAAGAACCTACCTTTCCCTTCCTCACCGTCCTAATCTCTCTCTCTCCTATACCGGTGACAACGAAAAACAACACGGAGAGAGGGGAGGCTTGCTAACGACAGCCACGGGGGATGATTTGGTTTGCGATGGCGTCGGTTGGGTGCGGTGGGGGATACAGCGGTGGCTGTTTGGGGGTTGTTGGGTGCGAGGGTGTTTTCTGTGGTGGCGGTGGCTGCGGTGGCTGTTTGGGGGTTGTCGATGCGACGGTTCTTTCTGTGGTGGCGATGGCTGTTTAGGGGTTGTTGGGTGCGAGGGTGTTTTCTGTGGTGGCGGTGGCTGCGGTGGCTGTTTGGGGGTTGTTGATGCGACGGTTCTTTCTGTGGTGGCGATGGCTGTTTGGGGGTTGTTGGGTGCGAGGGTGTTTTCTGTGGTGGCGGTGGCTGTTTGGGGGTTGTTGGGTGCGGTGGCTGCGGTGCGAGGGTTCTTTCTGTGGTGGCAGTGGCTGTTTGGGGGGTTGTTGGTGGTGGTGGCGGTGGCTGCGATGGCTGTTTGCGAGGGTGAAACCGTGGTGGATGGGGGAGATGAGAGGAAGGTAAAGGTGAAGGTGAAGAATTAAAATTTAAAAACAATTTTTATAATAAAATTAAAAATATTTAATTCAGAATCCAATGTGGCAAGACAGCTAGTCATGCCATGTAGGTTAAGTGGCAGTCAACACAGCATCAATTTTGACCAGACTAGTGGGGGACTATGATTTTACAAATTGGGAAAATAGGGGGATCAAATTCGTGAAATTAAAACTTGGGGACCAAAATCGTGAGTTGAGAAAAATAGGGGGACCAAAACTGTAATTAAGCCTTTTTTTTATCAAAAAACAGAGTCGTGCATTTTTTACCTTTCTCAAAAAATAAAGTTGTACTATTTTTACTTTTCTTCGCGTGAAAACCAAAATGAAATAATAATAATAATAATAATAATAATAATAATAATAATACTACCACCTCAACCTCATAATACTTTCTCTTTTGAGGTTTTGACTTGAAGGATCTACCGTTTCGTTTCGTCAGCGTTTTGTTTCTACAGGTTCGATACCAAACTTCTTCTTTTCCCCTTTTCTCAATCTCTTGATCTCTTCTATTTTCGTTAATTGCTTTGCTCAATTCTTTTGGTGTTGCAATTGGATTTATGTATTGTCAATCCTTATAATTTTTGCTTGAGAATCGTTCTGTAATTCGCTGTGATGTTGAAATTGAAATTCGAGCTAGGGTTCTGGTGATTTCCATTTGCCTTTGTTGTTCTTTCCTTGTTGATTTTCTTAGATCCTTACACAATTATGTTTTGTTGTATTTGACCTAAATTTTTATATCCCCTTCTATACCCTATTCCCAACATAGCTCTATCCATTTGGTTATATGCAATTAACAATTTCATGAAGAGTTTCATTGTATGTATGGATTACTTTGTTTTTATAGATGAATGTTAGTGGTTAATTAATTAGGAGAGGGGGAATTGTTAGTTTTCAGGATTCGAAGTTTAAACTCCTTTTGGTATCCCCTTGGCTCACTAGCTGAGCTACCAACTTGGGTCGTATGTATGAACTTCTTAATGCTTGCTTTGTAACGATAGAATAATTTTGATTAGGCAATTTCATTTTTGTTATAAAGTATGGCAACTTAAGTCATTTTTTTGTATTATTAAGTTTTTGTGTGCAAGGATTATCATATGTAATCTGAAGGTTGGGATTGTACAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13923.9	zf-C3HC4_2	31	72	1.80E-09
PF00097.28	zf-C3HC4	32	72	3.50E-09
PF13920.9	zf-C3HC4_3	30	77	6.60E-09
PF13639.9	zf-RING_2	31	73	1.50E-08
PF14634.9	zf-RING_5	31	73	3.90E-08
PF13445.9	zf-RING_UBOX	32	70	1.30E-07
PF15227.9	zf-C3HC4_4	32	72	4.10E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0044390	ubiquitin-like protein conjugating enzyme binding	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0046872	metal ion binding	Molecular Function
GO:0036503	ERAD pathway	Biological Process
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like

trEMBL

trEMBL term	Description
I3S3J9	_

SwissProt

SwissProt term	Description
RNF5_CAEEL	E3 ubiquitin ligase rnf-5

KEGG

KO	Description	Enzyme
K10666	E3 ubiquitin-protein ligase RNF5/185	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G19310	RING/U-box superfamily protein
Medicago sativa L.	MsG0180000183.01.T01	_
Oryza sativa L.	LOC_Os01g56070.3	RING finger protein, putative, expressed
Cucumis sativus L.	Csa003963	_
Glycyrrhiza uralensis Fisch.	Glyur000213s00016094.1	_
Codonopsis lanceolata	Cl_chr02_21630T	_
Arachis hypogaea L.	AH17G25740.1	RING finger protein 5 like

Expression pattern