| Gene ID | Annotation |
|---|---|
| Am01G045150.1 | Pre-mRNA-processing-splicing factor |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G045150.1 | mRNA | Chr01 | 226668019 | 226679121 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF08083.14 | PROCN | 415 | 820 | 1.10E-235 |
| PF12134.11 | PRP8_domainIV | 1780 | 2009 | 3.10E-129 |
| PF10596.12 | U6-snRNA_bdg | 1462 | 1620 | 1.60E-90 |
| PF08082.14 | PRO8NT | 76 | 227 | 4.90E-85 |
| PF10597.12 | U5_2-snRNA_bdg | 1230 | 1363 | 6.90E-72 |
| PF08084.14 | PROCT | 2232 | 2353 | 1.60E-50 |
| PF10598.12 | RRM_4 | 1005 | 1095 | 2.80E-47 |
| PF01398.24 | JAB | 2121 | 2219 | 2.60E-07 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | JAMM |
| GO term | Description | Category |
|---|---|---|
| GO:0030620 | U2 snRNA binding | Molecular Function |
| GO:0030619 | U1 snRNA binding | Molecular Function |
| GO:1902494 | catalytic complex | Cellular Component |
| GO:0022618 | protein-RNA complex assembly | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR019582 | RNA recognition motif, spliceosomal PrP8 |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR043172 | Prp8 RNase domain IV, palm region |
| IPR043173 | Prp8 RNase domain IV, fingers region |
| IPR021983 | PRP8 domain IV core |
| IPR012984 | PROCT domain |
| IPR012592 | PROCN domain |
| IPR012591 | PRO8NT domain |
| IPR019580 | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding |
| IPR042516 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily |
| IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding |
| IPR027652 | Pre-mRNA-processing-splicing factor 8 |
| IPR037518 | MPN domain |
| IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain |
| trEMBL term | Description |
|---|---|
| A0AAN9KZW4 | _ |
| SwissProt term | Description |
|---|---|
| PRP8A_ARATH | Pre-mRNA-processing-splicing factor 8A |
| KO | Description | Enzyme |
|---|---|---|
| K12856 | pre-mRNA-processing factor 8 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G80070 | Pre-mRNA-processing-splicing factor |
| Medicago sativa L. | _ | _ |
| Oryza sativa L. | LOC_Os05g07050.1 | pre-mRNA-processing-splicing factor 8, putative, expressed |
| Cucumis sativus L. | Csa001971 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000406s00019724.1 | _ |
| Codonopsis lanceolata | Cl_chr02_14630T | _ |
| Arachis hypogaea L. | AH18G00580.1 | Uncharacterized protein like |