Gene detail

Detail information of Am01G044290.1 Annotation

Gene ID	Annotation
Am01G044290.1	ribosomal protein S17

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G044290.1	mRNA	Chr01	224001820	224002627	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G044290.1
TTTAAATTGTCCTATAAAAAGAATATTTGGAATAAGTAGTAAGATCACCAACTAATCAAGGAAAAAAGGTTGGGATACAATCAAATACTCTGAAGCTTGATGTAGTGCTATTGAAGTCTTGTAGGCAAGTTTGGTGTTAGAGCTCTATCACCATTCTTTTATAGCATTTAGCACATCAGTATCATGATCAAAAGTAATAATTAAAATCACTAAGTAAGTTTATTTATGTAGAAAATTTGTGAAAACAAAAAAAATAAGCAAAAAATTCATCTCATGAATTTAGAATGAATAATAATGAATAAATTGATATCTATTACTTAATTTCACATAAAATCAAAAAAAAAAAACTGGATCTCATAAAATAAGAATGTAGATTAAGAAATAAGAGAAGAAAGTTGATATTAAATTTAATATAATTAAAAAATTGAGGAACATCTCCCTTATAGCCTAATGAATAGAAGAAAAAAGTTGATATTTAATACAAATATAAATTCAAAAAATCTCATAAAATGATGTTTTTCTTGGTTTTTTTTGCCTTTTTGTGGTATAGAGGGTGAGCTTCCTATATATGAGACCTAAGGTGACTCCTTCATAAGAAAGATACTAAAATTTATATACATCATGTTGGATTTGTGCACTCAGTGTAAAGACAAACTAATGCACTATCTATTAAGTGACAAAAAAAAGCTCTTCTTCAAGGGACATAATTAAATCCTACATATCATACAAATTCACCAAAACTATTAAATAAAACATTTTTCTAAGAACAATAATAAAATATACACGACTTCTCTCAATGCTTATAACTTTACAAAGAATCGTTATTTCTATTGCATGATTCACTAACTGGTCCATATTTTCCTTTGCCTCTTTGTTTACTTCAAAACTGCCAATAACATGGAATCCTTGACCCTTTTTGTGCATTCTACCTCTTCTCAGGAAACTCGCTCCTTTCTTCTGCTCTTTGTTTTTCAATATGAACATTTTTGTCAAAACCCCTCCCCTCACCATCCAAAATTGTCTCCTTTAAATAGTTAATTTTTGCTATAAATGATTAAAACTCTATCTTTTCCACTCATATTATAGTAACTCATGAGTTTATTGTCAATTAAAGGAGTAATTCATCTGAATATGAAACCCCTCACTTTCAATGCATAATTGTTACATAAAAAAGAATTTTAAAGGTCAACTAACTTAACTATACAAAAAATAATCTTTATTTTGTTTACAATTTTTTTTAAAAAAATATGTACCTAGATTGGAAGATTTCAAAAAATATTGAGTCGATTGATAAATTTTAATAAATGTACGAATATATTTATTTGTAGGTTTTTTCACTAAATTATATAATAACTAATATATAAATATGTTTGTTTGTGTAAATTAAATTTATTTAAATTTATTTGATAATAAGTAAATTAAAAAATGATGACATTAATTTCGAATTAGTTTAATAATATTTGCTTTTTTAAAACTAAATTATAATGCTGGTTTTAAATAAAAAAGTATGAAACGTGTTTAATATTATATCTAACTTTTATTTATTGTAATCATTGGCATAAAATATTTTTATCTCATGAAGTTGTTTGTGCATAAAGCCCTTCATCTACTACAATGTATTTTTATATTTTTGGTTACCATTAATGTCATCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAGTTATCATTATTATTATTAATCTAATAAAATGTAGTTATTTATTATAATTGACACAAGGAATGTAAAAACTAATATATATATATATATATATATATATATATATATATATATAATAGTTATCATTATTATTAATCTAATAAAATGTAGTTATTTATTATAATTGACACATAAGGAATATAAAAACTAATATATATATATACTAACAATTAAAATAATATATATATATATATATATATATATATATATATATATATATATATAAAGGAGAAAAAGGAAAAAAAACTCACAATTCAAGAGTCGAGCTTCTTTTATATATATATATATATATATATATATATATATAGATATAGATATAGATAAACTATATTATATTATATTATATTATATATAAACATATTGTTAGTTTTTATTATTATTTAATATTCCACTAAGAGAATCTTTTAATAAATTAGTGGCAATTATGTTCTTTCATTAGAATTAAAGTATTCTTTATGTGTAAATTTTAAATAAATATTATAATAGATAAAATTTAATTATGAGAAAAATTGTGGAGGCTCCATTGGGGTCTCCTTTACATATATATATAGATTTTTTATTTTTGCAGGAACTTTGCAGAAATATTGAAACATTTATATCAGCGGTCTTAGGAATTTATTTTACTTCATTCTCTTTTGAGTTTCCAAACATTGGATATTATGGTTTTTATTTGAATGTACCATATTGAGTTTCCAAACATTGGTACAAAATGGTTTTTATTTGAATGTACCATATTGAGTTTCCAAACATTGGTACAAAATGATTTTTATTTGAATGCAAACGCTACATGTTGGTTAAACTTTTTAATTCTCTACCCAATAAAATTTGTTCAACTATATTAATGTGATATTGAAATATATTAACAATATCATTTGATATCAAACAAAATAAATTTTCAACATATTTCTCCCCGTGCAACGCACGGGTGAGAAACTAGTATTTATACAATTGGCGGATGAAAATCACAAAACTGATAAAGTGCTTATCTAAAAAAACAATAAAAAAAAACTGATAAAGTTGAAAGAACAAAAATATAATTAAAGCTAAATAAAAAAAGAAGGAGCGACGGTGGCAAATGTTGGTGAGCTGGATCATCAGCGTTAAAGCGAGATGGTGTAGCATTTTAAGGTGCACCATCGCTGCACCCAAGTAAAGCAGCGCATAAATAAAGAGAAGCATTGATAATTCAGCGGTTGGTTTATCTTCTTCTTCTTATCCCTTCGAAAGAGAGACAGATAACAAAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00366.23	Ribosomal_S17	53	116	1.90E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	Molecular Function
GO:1990904	ribonucleoprotein complex	Cellular Component
GO:0005840	ribosome	Cellular Component
GO:0003729	mRNA binding	Molecular Function
GO:0009657	plastid organization	Biological Process

InterPro

InterPro term	Description
IPR000266	Ribosomal protein S17/S11
IPR019979	Ribosomal protein S17, conserved site
IPR012340	Nucleic acid-binding, OB-fold
IPR019984	30S ribosomal protein S17

trEMBL

trEMBL term	Description
I3S4Q8	_

SwissProt

SwissProt term	Description
RR17_PEA	Small ribosomal subunit protein uS17c (Fragment)

KEGG

KO	Description	Enzyme
K02961	small subunit ribosomal protein S17

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G79850	ribosomal protein S17
Medicago sativa L.	MsG0280011299.01.T01	_
Oryza sativa L.	LOC_Os04g59494.1	transportin-2, putative, expressed
Cucumis sativus L.	Csa009837	_
Glycyrrhiza uralensis Fisch.	Glyur000043s00003803.1	_
Codonopsis lanceolata	Cl_chr02_06200T	_
Arachis hypogaea L.	AH14G34260.1	30S ribosomal protein S17, chloroplastic like

Expression pattern