| Gene ID | Annotation |
|---|---|
| Am01G043560.1 | splicing factor, putative |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G043560.1 | mRNA | Chr01 | 222448423 | 222452187 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF08920.13 | SF3b1 | 271 | 399 | 3.10E-44 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0071004 | U2-type prespliceosome | Cellular Component |
| GO:0005686 | U2 snRNP | Cellular Component |
| GO:0071013 | catalytic step 2 spliceosome | Cellular Component |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR034085 | TOG domain |
| IPR038737 | Splicing factor 3B subunit 1-like |
| IPR015016 | Splicing factor 3B subunit 1 |
| IPR021133 | HEAT, type 2 |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| trEMBL term | Description |
|---|---|
| V7BPY5 | _ |
| SwissProt term | Description |
|---|---|
| SF3B1_XENLA | Splicing factor 3B subunit 1 |
| KO | Description | Enzyme |
|---|---|---|
| K12828 | splicing factor 3B subunit 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G64270 | splicing factor, putative |
| Medicago sativa L. | MsG0180003565.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g05310.3 | splicing factor 3B subunit 1, putative, expressed |
| Cucumis sativus L. | Csa004156 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000136s00007938.1 | _ |
| Codonopsis lanceolata | Cl_chr02_39560T | _ |
| Arachis hypogaea L. | AH10G05460.1 | Splicing factor 3B subunit 1 like |