Gene detail

Detail information of Am01G043150.1 Annotation

Gene ID	Annotation
Am01G043150.1	nucleosome assembly protein 1;3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G043150.1	mRNA	Chr01	221040069	221042907	+

Sequences

CDS:

>Am01G043150.1
ATGTCCGATCTCGGCGCTGATCTCCCCGCCGCCGCCGCCGCTCTCAGTGCTGAGGATCGTGCTGGTCTCGTGAACGCGCTCAAGGATAAGCTTCAGCTCTTAGCTGGGAAGCATGTGGACATCTTGGAGACACTGCCACCCAAAGTTAGGCAGCGCGTCCAGGTTCTCAAAGATTTGCAGAGTCAACATGATGAATTGGAGGCTAAGTTTTTAGAGGAGCGAGCACAGTTGGAAGCTAAATACCAGAAGCTTTATGAACCATTTTACACAAAGAGGTATGAGATTGTCAACGGTGTTACTGAGGTTGGTGGAACTACAAATGAAGCGACACTGGAAGGAGGAAACGAAGCTGTTGAAGAGAAAGGAGTCCCTAACTTTTGGCTAACTGCAATGAAGAATGTTGAAACACTTGCTGAAGAGATCACTGAACGTGATGAAGGGGCACTCGAGTATCTTAAAGACATCAAGTGGTGTAGAATTGACAACCCTAAGGGTTTCAAGCTGGACTTTTATTTTGATTCTAATCCTTATTTCAAAAATTCCGTGCTTACAAAAACATATCACATGATTGATGAAGACGATCCTATATTAGAGAAAGCAATAGGAACGGAAATTGAGTGGCATCAAGGAAAGTGCTTGACAGAAAAGATTCTTAAGAAGAAGCCAAGGAAAGGATCAAAAAATGCCAAACCGATTACAAAAACAGAACAATGTGAAAGTTTCTTCAATTTTTTCAACCCTCCTCAGGTCCCCGACGATGAAGATGATATTGATGATGATGCTGTGGAAGAGCTACAGAATTTGATGGAACAAGATTATGACATTGGTTCTACAATCCGGGACAAAATTATTCCTCATGCTGTGTCATGGTTCACTGGGGAGGCTGTACCAAATGATTTTGAGGACATAGAAGATGGTGAAGATGATGATGGGGATGGGGATGAAGATGAAGATGAAGAGGAGGATGAGGATGAGGATGAAGACGAAGATGAGGAGGAAGAGGAAGAGCAAGGGAAGAGCAAGAGAAAGATTGGTAGCAGAGCCAAACCTGGCAAAAATCAGCCAAAGGAGAACCCTCCTGAGTGCAAGCAGCAGTAG

Protein:

Promoter(3k):

>AM01G043150.1
AAATAAAACTTTATTTTAAATAGTCTAATATAATAAACTAGTCTAAAACAGTACAATCCAAGTAGTAAAAATATCGTACACTACAACAACGGAAAAAATCAATCACGTCCCTCTACCAAACCAAGCAACCTCGTGAGCCGTCTGTACGTCCGAGACTGAGGATGAATGTCTCCGGACGCAAGTGCCAACCGCAGCTGCTCGCTCATAATCATTAGTTTCTCCTCAGGTCCCCTCACACCTGGTGTTGGTGCTGCTGGTACTGGAAGGAGACGAGGAACTGATACCCTAACATACCATGGCAAGTACTGCTGATGAAGCTCACCCAGCTCTATAGCAGTAATGCTCAAAACCTCCCGAACACTGTCCCTCACCTGGTGATATGCATCATGATCTCAGTATACGGTGGTCGACCGCGAAGCGGGTCACGAGGGATCACCTGAATGTATCCAAATTGCCGGAGGCACCTATCCGACATGTAGGGAACAGTGATGTCCTCCCAAATCAAGAAACCTCTATATAATGACATCTGATCAAAGGGTCTCTCATGCCGGTGGCCCTCAAATGGTCTCCAGATGACATCCTCAGGAGTCAAAGCATCAATCCTCCTCCTATACTCATCCAGCTTGACCGTATCCGTCTTCCTCCTCTTCCAAAACTCACACCTAGGCCCGGATGTGGTCCCAGTACCCCCCCGCACAACTATCTGAGGAAAATACTCAAAGATTCATAACTGAAATGCACAAATAAACAGCATCGTTAAAAATAAAGTACTTAACGTTAAATCAAACAAACTCGTTAAAATAAAAAAAATTAACTTACCATGAACATCGTGGCATACCCCCCTAGCTGAGTGGTACCCTCTAGGCATGAAAAGCTCAGCTGGTCGTACAAGAAAGCTAAACCTGCTGGTCCCCATGCCCATCCGCTAGTTGCGGTGATGTCCTCCAGTAAGAGCAACCACTTTGCCTCAACTCTGGTGCCGGTCTTGCTACAAAAAATGCTCATCCCCAAAATAAGCAAGATGAATGTCCTGACAGCACAAGTCTGGTTCATGCCTATATGACGGCTAACTATCTCCAGCAGCCAGTCAAACCGGAAATATGGCCCCTACTGGCGATGCACTCCTCTGTCGCCTCAGCAAGAGTGACCCCAAGCAACCTCACAGTCAACTGGATGGCATCATCAATGGTAACTAACTGAGCAGGAGACCGGAAATATCTGCCAGCCAATGGTAGATGTAGCAGACATGACACATCATCCAAAGTGATCGTCATTTCACCAAATGGTAGGTGAAATGACGATGTCTCTGGGTGCCATCTCTCCACAAAAGCAGATAACAGCTCATGATCCACAGTCGTGTAAGCTGAACTGACGATGGGGGTTAATCCTGACTGCCGAATATACTCCCAAAACCCCTGATTTTGTGAATAAGGGACCAACCTTTGACTGATTTTGTTGCCAGGTGTAGATACTTTCAACTTACGCACAAATGTCTGAATTAAAAATAAATAAATTTACTTATACTATTAATCTATAAATTTATATAACAACACTATGTAAATAAATACATAGTTGTTGTTGAAGAGAAGATGAAGCGATGAAGATAGAAACACATCTCGAGACAGAAACCAAATCGAAAATGACGTAAGTCAAAGAAAGAGAGGAACAGAACCGCAGCAAGCTAAAGCATCACCCTTCAAACAATCTGATGCTCACTACCACAGCAATCTAATTGCTACAGTAATTAAAACCTAAGATAAAAAACCCATAGTTGTTCTAGATTGCTGTTTGTGGAAGAAGAAACGCTTCATCAGATATATTATTTTGAGATTTTTTAATTTTTTTTCTAATTTAAAATAAGGATAAAAAAATTAGAAAAGAAAAAAAATGACACCTCAGCTCTCCGTTTGCCACCTCAACGTTTTTTAATAGTTGATTAACAAAAGGACATTTTTAAAAACGAGTTGATTTTACAGGGGCATATTTAAAAAAAAAATTGCAAGGGCATATTTAAAAAACAGGTATATTTGCAGGGACCAAAAACATATTTAAACTTATATTAAATTATATTTACCTAGTCTCCAAGTATCTTAGACGCTACATGAGCATCAAATCCAGTGAGGAGAGAACCATCCATAGGTCCTATGTCAGCATGCTCCTGCTCCTCATGTGCCTCGTACTGGTGCTGGTCATCAGTCTGGTACTGTTGCTGATAATGATGGTACTCGGGCTCTTCATCCATTTGATACTGCTCTTGCATCTGCTCCTCCTCCTCATCCTCCACAGCCTGCCCCTGGGCGCGTCTACGCCAGTGAGACACACATGTCCCGCATTCCTGATGCGGGTGCGTGTACTAGGACCAGGAGTATCTACCGGGTCACCGCCACCTCGCAAACTCGGCCGTGAAGAACTGTCCCCACTGCAAAAAAATTTTTAAAAATGAACATAGTTCAAAAACGGATGTATGTACATCCGTTGAGAAGAAATGGATGTAAACGGAAGTACTTACTTCCGTTGTCTTCAAACGAATGTATGTAATTTTGTTTCGTCAAAAACGGAAGTATGTAGTTCCGTTTGCTGAAAAACAGATGTAGGTAGATCCGTTGGAAAGAAAACGGATGTATGAAGATCTGTTTTACGCGAAAATGACAGACTCTATCTCTCTCTGAAAAACGAATGTAAGTGAAAAATGATAAAGTAGTTGTAATTTTGTAAACTGATCAAGGGTATAAGCGTCTTTTCACGGGGTGCGTGGGGTTGGGTGGGGTATATAGATTGAAGGAGTGGAGGTTTAAAAAAAACCCTTTAATTAATAGAAGAAAAGTGCATGTTTTCTACCCGGTCCAACTGACAGCAACGTATAAACAAACGAGAGAGAAAAGAAAAGGGTTCCTTCTCCTGTACTCCTATCAAATATCTCTTCACTCAACTCATTATTCAGTTTCCCTCCTCCTTGGCGGTTTTCCTCTTCCTCCTTTTTCTCGCCTCACAATTCCAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00956.21	NAP	51	294	7.20E-84

Gene family

Gene family	Subfamily
Epigenetic Regulators	NFA3

Gene Ontology

GO term	Description	Category
GO:0003682	chromatin binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0000724	double-strand break repair via homologous recombination	Biological Process
GO:0016020	membrane	Cellular Component
GO:0016444	somatic cell DNA recombination	Biological Process

InterPro

InterPro term	Description
IPR002164	Nucleosome assembly protein (NAP)
IPR037231	NAP-like superfamily

trEMBL

trEMBL term	Description
A0A8B8KKQ4	_

SwissProt

SwissProt term	Description
NAP1B_ORYSI	Nucleosome assembly protein 1;2

KEGG

KO	Description	Enzyme
K11279	nucleosome assembly protein 1-like 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G56950	nucleosome assembly protein 1;3
Medicago sativa L.	MsG0280011164.01.T01	_
Oryza sativa L.	LOC_Os05g46230.1	NAP domain containing protein, putative, expressed
Cucumis sativus L.	Csa009194	_
Glycyrrhiza uralensis Fisch.	Glyur000115s00008228.1	_
Codonopsis lanceolata	Cl_chr02_03950T	_
Arachis hypogaea L.	AH18G02510.1	Nucleosome assembly protein 1 like

Expression pattern