Gene detail

Detail information of Am01G043010.1 Annotation

Gene ID	Annotation
Am01G043010.1	Homeodomain-like/winged-helix DNA-binding family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G043010.1	mRNA	Chr01	220740132	220746700	+

Sequences

CDS:

>Am01G043010.1
ATGGGAAATCAGAAGCAGAAGTGGACAGCGGAGGAAGAAGACGCGTTGAATCGCGGCGTCCTGAAGCACGGTGCCGGGAAGTGGAAGAACATCCTCAAAGATCCAGAGTTCGCCGCTTCTCTTGTTAACCGTTCCAACATCGACCTAAAGGATAAATGGAGAAATTTAAATGTTGCTCCTGGTCAAACCTCTAAAGAAAAGTCTAGGACTCCCAAGGGCAAACCAACATTTCCTGTTCCTGCTATTCCATCTCCTTCGGTTACAATGAATTCTACTCCTGTGCCGTCTCCAGCTCCAGCTGCTACTACGCAAAATGCTACTCCTTCATCTCAAACTCAAAATGATGATGAAGCCAACATTCCTCCTCGGTACGATCCAATGATTTTTGAAGCTTTATCAACAATCAAAGATCCTAATGGGTCGGATATAAATGCAATTGTTAGCTTTATTGAGCAAAAGCACAAAGTTCCCCAAATTCAGAATTTCAGAAGGGCATTAGGTACAAAGCTAAGAAGGCTTGTCAGTCAAGGAAAACTTGAAAAGGTTCAAAATTGTTACAAGATCAAGGACACCCCAACTGGGGTGAAGTTACCTGACCTAAAATCACCCGCACCAGAAGCAAAAATGCAACCAGAAGCAAAAGTGCAGCCACCACCAGCATTGACCTCTTCAAAAGTGCAACCAGAAGCAAAAGTGCAGCCATCACCAGCATCACCAGCTGTGACCTCTTCAAAAGTGCAACCAACCTCTTCAAAAGTGCAACCAGAAGCAGAAGTGCAGTCATCACCAGCATCACCAGTAGTGGCCTCTTCAACATTTGAAGAGGCAATGATTGAGGCTTCCAAGACGGCAGCCCAATTGATTGCTGATGCTGAGTCTAAAGCATTTTTGACTGATAAGACAGTCAGGGAGATGGAAAAACTCGATAGGATGGCAGAACAGAATGATGCAATGTTAAAGCTTGCTGAAGAGCTGTTCAAAAAATGTTCGGGTGGTGCGATATTCAACTTGGATTAA

Protein:

Promoter(3k):

>AM01G043010.1
TTTAATGATTTGTTTAGATAGTAATGATCCTAGGCAGTGAGAATACAGAACGGTTATAAAAGGGAAGTAAGGGTTAGGGTTTTAGACAGATGCGGTGATCATTACAAGAATTAAGGGTATTACTGGCTAACTCAATCCCCCAGTAATGGTATAAATCGGCCAGAAATTGCACTTTACTGGCGGATTTAGTCCGCCAGTAATCAACCAGAAAAACGATCGCAGGTAACAGTTACTGGCTGAATTTCAGCCAGTAATTACTGGCGAAAATTCGGCCAGTAAATCCGCCAGTAATTACTGGCTGAAATTCGGCCAGTAATGTATTATATATTTTTTTAAAAAATATTTTTAAAAAGCTTTTTTGTATTTAAAATTTGTTGTTTTAAATATTTAATTCGTTTTTTTATTTAATTTTTTAAAAAGCTTGTTGTTTGAAGCAAAGTGAGAACCAAAGTGTTCCTGGCAGAGGCGGCGACGACGGTGCTCCGGCGACCCTCCGGTGGTAGTGGATTTGGGGTGGTTGTGTGGTTGTAGGGGTTGTATTGAGCCGCAGCCTTCAAGACCAGAGAGAGAAAGAGAGAGCAAACGAAAGAGAGAGAGAGAGAGAGTTGCAGCGATGGTGGTTCATGGTGGTTTTAGCGGTGGTGAGAGAGAGAGGAATTGTGGCCCGCGGTGATTAGAGAGAAAGGAGGGTGTGCGAAGGTGGTGGCTCTGCTGTTGTTGTTGTGGAGGTTTTGGTGGTGATGAGAAATGAAGGTTGGTGGTGATGAGAAATGAAGAAATGAGGGATTGAGATGAGAGTGAAGAAATGAGGGTGGGAGATGAGAGGAAGGAAGTTGAAAGAGAGGGAGATGAAAAAATGAAATGAGATGAGAGTGATTAAAGGTGGAGAGAGAGATGAAAAGCTGGCACAGATGAAAAGGTGGAGACAGTGATTACTGGCGGACATATGTCCTTTACTGGCGGAACTGTTTGCGTTTACTGGCGGAACTGTTGCAGGCTGACAGCCCATCGAGTTGACCATTGCTGCAGTCCTTACTGGCGGAAATATGTATTTACTGGCGGAACTGGACTGACGCGACAAGGGACTGCAATTCAGGATATTTTGTGGCTGAAATTTCCGCCAGTAAATGTAATTACTGGCAGATATATTTATTTATAAAATTATTTTAGTTTTCCAATTAATTTCCGCCAGAAATCCCCTACTCAATCCGCCAGTAAATATACTGGCTGTTTAAATTCGACAGAAATGTTATGGAATCCGCCAGAAACTTACTGGCAGACTAAATCCGCCAGAAATTGCCAAATTCCACCAGAAACTTTACTGACTGACTGATTCCGCCAGAAATGCCTAGCCAGTAATGCAAGTAATTCTTGTAGTGGATGGGAGATTAAATTTGTGGTGCCTGGGATTGAGAATATCACAAACCTCTCTATTTCGTTAATATTTTGTGCATCGCTGAGGGTCAAAAGCTTCGCTGGGGAAGCATTCCAGTGGCGTTGGTGTTCAGCGATCTTAGGTATATACCTTTTTGCCTAAAATCAATTTTACTTGCTTTGAATCGGTCGATTCCTCTATCTGGTTTGTGAATTTCGTTTGTGGTTTATTTGGATGTGGTTATTGAATGCTTGGGTCTAACGATCTTGATAGTTTATTGATATACACTTTTGGAAATTCATGTATTGAAATGAAAATGACTCATTTGTCAAAGTCGGTACTTTCTCAAGTCCAAACAACAATGAAGAGAGAAAACCCATCTATCTAATAAAATTCTAAACCTTCTCTTTTTAAAGATGAAGGGAGAAACCCCATTTTATTTTCTTAGCCAATACTTTCTCCAAATTGAATGTTCAAGCCCTATTCTTTTTATGATTTTTTCCACCGACCCCAGTGGCGGACCTAGGACCCAGAGTCAGGGGGTTCAAAATTTTTAAAGACATGAATCGCTAAAAATATAATTAAAAATAACTTTAAGAGATATTTGCCTACTGATGTGTTTGTGTGAGATATTTGGGTGCAAAATTAAGAGTCCTAATACAAATTTATAATCGGTCGACCCAATTGGCCGAGCCCATTTTTCCAACTATATTATTCATAATACAATTATATTCAAGAGTCCCAAAATAACCTTTTTTTTCTCCCTTCCACACCTTATTAGGCACAAACAACTTCTAATCACAAGTTTTGTTTCTAGGAAACAATAAGATTTAATTTATATACGAGATGCTACAATGAAATTTTACATTGTCAATGAATCACGATTTGACATGTCATTAAAATTAACTGTGTCTTCTCTCACCTATTGTGATTTGTGGTTCACTGTCCGTTTAAAACCTTTTACATTTACTATGTATAAAAATTAAACCCGAAAAATATATTCCACAACATATTATCAAACAAAGTATTCCAACTAAGAATCACAATAATTGAGAAGATCTAATCTATAACAACTGTTATGATACAATCATTTCATAATTTGAGCCGTGCTAAATAGTACGAACAGAAATATAGAAAAAAGTCTAACAAAAGAGGAGGGAGCATAAAACTAACGGCGGAAATTAATATGAGAAATGTTAGATGGTAAGAAAACAAAAGTAAAAATAATAAAACAATGCACTTTGGTGTGTAGTATTAGTTGGTGTATAATTCACCTTATAGTGTATTTCTTCGTTTCTTACAAAAATTATTCTTACTAAATAACTGTGCTCGATTAATATTGTACGTTAGAGGCACAATTCGTTTAGTACAAATAAGCATTTTTTCTTCGTAGTTTTTTTTTGTTGAAAATTGACCTCACTATTTGTTTAAGTTAGATGATGTTGACTATGGTTGAGCAAATATTAACTATGGTAAAGTAGAGCTAGTGAGCGTAGTAATGCATGTTTGCTTCACTCACTCTCAATATCTTTCTCAAAATCCAAGGTAGCGCACTCTTCTCCCTCCCATTTCACTCTTCCTCGGTGGCGTTGTTCAACTCCGAAGCAAAGGTTTATTGATCAGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00538.22	Linker_histone	122	184	6.50E-12
PF00249.34	Myb_DNA-binding	5	56	7.50E-09
PF13921.9	Myb_DNA-bind_6	8	59	2.10E-07

Gene family

Gene family	Subfamily
Epigenetic Regulators	SMH13

Gene Ontology

GO term	Description	Category
GO:0003691	double-stranded telomeric DNA binding	Molecular Function
GO:0006334	nucleosome assembly	Biological Process
GO:0000786	nucleosome	Cellular Component
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0005730	nucleolus	Cellular Component

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR044597	Single myb histone 1-6
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR005818	Linker histone H1/H5, domain H15
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A1S2XEV0	_

SwissProt

SwissProt term	Description
TRB4_ARATH	Telomere repeat-binding factor 4

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G17520	Homeodomain-like/winged-helix DNA-binding family protein
Medicago sativa L.	MsG0280011147.01.T01	_
Oryza sativa L.	LOC_Os01g51154.1	single myb histone, putative, expressed
Cucumis sativus L.	Csa016567	_
Glycyrrhiza uralensis Fisch.	Glyur000115s00008249.1	_
Codonopsis lanceolata	Cl_chr02_04100T	_
Arachis hypogaea L.	AH19G07860.1	Telomere repeat-binding factor 4 like

Expression pattern