Gene detail

Detail information of Am01G042790.1 Annotation

Gene ID	Annotation
Am01G042790.1	GRAS family transcription factor

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042790.1	mRNA	Chr01	220243988	220245481	-

Sequences

CDS:

>Am01G042790.1
ATGGAGATTAGTCCTTACACTTCCAAGAAATCAAACTTGAAGAACCATAATCAAAATCTTGTTCTTTATGAAGCTGCAACCATAGACATGTATAGTAAAAGCAATCAAAGCCACACATCTTCAGATTCTAGCGACCCTTGTGATAATCATCAAGATGGTAGTAAATGGGCTTCCAAACTTCTAAAAGAGTGTGCAAGAGCAATATCAGATAGAGACTCAACAAAAATCCATCATCTTCTATGGATGTTAAACGAGCTTTCATCACCTTATGGTGATATTGAACAAAAGTTAGCTTCATATTTCTTACAAGCTTTATTCTGCAAAGCTACAGAATCTGGTCAAAGATGCTATAAGACACTATCTTCAGTTGCTGAGAAAAATCACTCTTTTGATTCAGCTAGAAAGTTAATACTCAAGTTTCAAGAAGTAAGTCCTTGGACAACTTTTGGACACGTGGCTTCAAATGGTGCTATTTTAGAAGCCTTAGAAGGTGAAACTAAACTTCATATAATTGATATAAGTAATACTCTTTGTACTCAATGGCCTACTTTGTTAGAAGCTTTGGCTACAAGAAATGATGAAACTCCTCATCTTAAGCTCACAGTTGTGGTTATAAATGCTAGTATAAAAGGTTCTGTTATGAAAGAAGTAGGTCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTACCCTTTGAGTTGAATGTGATTAATGGGTTAAGTAGTTTAAGAGAATTAACAAAAGAGAAGTTAGGAGTTCAAGACGATGAGGCAATAGCAGTGAATTGTATTGGAGCATTGAGAAGGGTAGAAGTGGTAGAAAGAGAAAGTGTGATTAGCATGTTTAAATCACTTTGTCCTAAAGTTGTAACAATTGTTGAAGAAGAAGCTGATTTTTGTAGCTCAAGAGATGCTGCTGATGAATTTTTCAAGTGTTTTGAAGAGGTACTTAAGTTTTACACAATCTACTTTGAGATGTTACAAGAGAGTTTTCCACCAACAAGTAATGAAAGGTTGATGTTGGAAAGAGAGTGTTCTAGAAGCATAGTTAGGGTTTTGGCTTGCTCTAGTGTTGTTGGTGGTGATCATGAATTTGAAGATGGTTGTGAGAGAAGAGAGAGAGGAAAACAATGGTCTGAAAGGCTTAAGAATGCATTTTCTTCAGCTGGATTTAGTGATGATGTTGTGGATGATGTCAAAGCATTGCTAAAGAGATACCAAGCTGGATGGTCCCTTGTGCTTCCTAGGCCTCAATCTCAAGGAGATGATCATCTTTCAGGAATTTACCTTACATGGAAGGAAGAACCAGTAGTTTGGGCATCAGCATGGAAACCCTAG

Protein:

Promoter(3k):

>AM01G042790.1
TAGCATGGATGAATTCTTTTAGAAATTTCTTCTCTTTTACATGTTTGCAAATTCTCCTATGAGGTTGAATTATTTGGTTTGTTTATCATGTTTCTTTTAAGTATTCTTGATATTTTGGAGTTTGATATTCTTTGTTCACTATCGAAGTTGATTAGGAGTGAATAATGGTGTTGATAAAGATATGCTTGGGCAATGCTGTAGTGTCAAATGGAACATAGCGGGGATAAACCATTCATGGCAGTGGCTTCTTATTACAATGATTTTTACATATAATATAGTTTGATCCCAATTCATCTATTCGGTCTCTAATTTTCAATTCTTCTCAATTATCTTTTATGAATTTCACAATCAGTTTTGCACATTGATTAGAGTGTCCATAGAAACCATCCATTGATCCCAAGAAAGTAAACAACCAATCAAATACTCTTTGCCGCAAACAAGCAGTTTCGCACATTGATTACATTTTATATTGCTCACTCCATCTAATTTTGCTCCAACTGCAAGTAAACGAAAAGGGAATAGGGAATGGGTGATGCCGGAATCGGAACACTGGTGGGGGTAATTGGCGAGTTATTCCAAGTGGTCGCAGTATAGGTGGGTGCATGCTAAGGGCAACGAAAAAATGAAAACGGGAAAATATTTGTCTCTTAGTATCTAATTTGTGTGTAAATCAGTATCAGTATTTTCATAATCTTCATTGACAATGCTTTAATCCATGGCTGATGATGGGGACAAAAGAGTATTTACTATTGACTTTCCTTTATCCAAATTGAATGTAAGTTGTAATCTGAATTTATATTTACTCACAATGTATATCAAAGTACACACAATTTATATCAATAGTATATCAAAGTCATCTGAATTTATATTTACACACAATGTCTGTATGTCCTTCAGATTGATACACAATAGTGAAATTTTCCATTGTAAAATAAAATTTATGGTCCTGTATTATTACAATTGAATCAGTAATTAGGTTTATTGAGTAATATCCTTTGGTATGGACTGTGCTCTATAATATATTATGCATTTTACTTTCAAGAACTTTACGTTAGTCTAATTTAACATATATAACCATAGGTTTTATAATATTACAGTTGCCATATATCTAATCCACAAATTAGAGTTAGACACGTGAGTTTGTTACATATAAGGGTTTGGCAGCATCCAATAAACCTAATATTGTTTGTATGGTTTTCAAGATGAAGCTGGATGAACTAATTACAGACTTCAAGAATAGTCTCCATTTTATATCTTAATTACCATGTTTTCTTTCTCTACTAAATCTTGAACAACTTAATGAGCAAACTACAAGTTTTGCAAAATATCACTCCTTTTCTTCATCATGGTTAGCTTATTTTGTTTTAGTTATTTACTTTGTGCATACAAATTTTCAGGAGAACTTTATATTTCTAATGTTATCATGAAGTAGAACGACATTGATCTCATATTGGTCTTGGTATAACTTCATTGGACAACCACGCAAAGTCTAAATGTATGGTGATCCTATTAAATTGGGTTATTTCTATATAGACCATTTTAATATATTTGTTTTTATACTTTGTAAAAATGTGTTTTTTATATAAATTTCTCAATACAAAAATTACCCAGACTAAATTTTAAATTATTGACAATTCATAGGTCTATTTTATTATTTCCTTAGCTCATTAATTTAATAGAGATCATATTTTACCCCGGGATAATTTTGATGAAAGCCTAACGCGATATTGTGATTCAAGCACCGGTTATCAACGCACGGTGAAACAAAATTTTCTTAATTTTATAAACCGTTATATCTTATATACAAATTTAGCAATTTTATTTAAAAAAATTTCTACCACTATAAAAAAAGTGCACTTTTTTAACTATCAAATAAAGCTCAAATCTAACATTATGCACAACTTTTTATAAGTCACCTAACTAAATAAATCATTACTGAATTACATGTTGCGCTTTGTATTCTAATAAGTCAATCTACGAACGTGTTTTTTTAACAAATATTACAATCACATGATCATAAACATCTACAATACATATATATGTATATGTATATATATATATATATATATATATATATATATATATATACACACACTCACACAATATATTAACAATAAAACAATTTCAATTTGTATTAAAAAAATTGTATACCCGTGCATTGCACGGGTCATACATACTATAGTATTACACAAACACAAAACAGTTTCTCTTTTTCTTAAAAATCTCTACAAAACTAATTTCAAAATTTTTTAACAACAAAATCACTTATTTTTCAATTCGCAACAAACTGGCCCTTAATTGAGTTCTCGTACGTGTTGTGAGCAAAGTTACAAGTACGTAACGTGAACTAGCAAGGTTCATGAAAACTTCTCATACGCAGAAAAGAAGAAAAAGGAGACGCCTATCAAAAAAAAGGAGATGGTTTAGTCTTTTTGATATTTTAAAAAGTCTTAGTGTAACTAGGATAGGAGTGCATGTTAATAGCCACAACCATAAAAGTTGTACATAAGAAACCAAAAAATAAGCACAAAATTTAAAATAGAAACTTTTTTGTATAAAAAATATGCATGCTTTTCAAATAAAAAATAAAAAATAAAATATCAAAATAATGCAAAATAATTCCAAACCCAAGAAATTAAATATCAATATAATTGTCCCACCTCTCACTGTCTCACACACACACAAAAAAAAAAGAACAGCTCAGCTCTATTATTGAATGTGTCAACCATTTAGTGCAGATTAGAGAACTTCAAAACACCAACAACACAACCATAATAAACTCTACTTCAACATACTTATATAATAATATTATATTATATACCTATATTTGTCCTAATATATACGCAAGAAAATTATTAAAATACTATCCATGACGAGTTATGACAATGACCTGTATATATATAATTTCCAAATCCATATACATGGAATTTTGAGCACAATAGAGATTAGAATTTCTCCCTGCACTCAAGAACTCAAATAGTGCCACATAGAAAAGTAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03514.17	GRAS	59	444	1.20E-91

Gene family

Gene family	Subfamily
Transcription Factors Family	GRAS

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0009610	response to symbiotic fungus	Biological Process

InterPro

InterPro term	Description
IPR005202	Transcription factor GRAS

trEMBL

trEMBL term	Description
A0A8B8KHX9	_

SwissProt

SwissProt term	Description
SHR_ARATH	Protein SHORT-ROOT

KEGG

KO	Description	Enzyme
K27743	protein SHORT-ROOT

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G37650	GRAS family transcription factor
Medicago sativa L.	MsG0880045989.01.T01	_
Oryza sativa L.	LOC_Os07g39820.1	SHR, putative, expressed
Cucumis sativus L.	Csa024957	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000370.1	_
Codonopsis lanceolata	Cl_chr08_03990T	_
Arachis hypogaea L.	AH08G11360.1	Protein SHORT-ROOT like

Expression pattern