Gene detail

Detail information of Am01G042630.1 Annotation

Gene ID	Annotation
Am01G042630.1	Calcium-binding EF-hand family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042630.1	mRNA	Chr01	219957844	219959404	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G042630.1
AGTTTATGGCAAACCGTGGATAGTTAGTAACCAACAAAGGCCGGTCTGAGTGGTAACTAAATTCGGATTTCATCCTAAAGTTTCGGGTTCGAATTATGAGTGTGGCAAAAACTCTGTTGGTAGGGCTAGCCAGGTTTCCCGGCGTATATTAGTCATCGGCAAATCGGTAGAAACTACGTATCAATGACATGGTAATAAAAAAAATCGTAGTAAAGTTTAAAGTGTCTCATGATATTACCATTTGAACAAATTTATAAATATAAAGTAAAGTTTTTATTTGTTACATAAATTTTAGGGTGAGGGGATGAAGCCCCGGTCAAAGGTAGGGATTTGAAACTGGAACCTTACAAATACAAATCATGTCATACTCCACTGGACTTCAATTAAATATCACTAGCTATAAATAAGCAATGTCCCTCACCCTAAAATTTATGGTTTTAGGGTTTCTAAGTAAGCATTTTTAAGTATTCAAAAAAAAGAGACATTGCTTATTTATAGCTTAAATTGTTTCATTTGACAAAATCACTAGTTTTGATTTACAATTTTTACTTTTTTTTTTTATAATTTAGGTGATCTCATGTCACCATAAATTTATTAAAAAAGGGAAAACAAAACAAAAACATGGACGACATAAACCAAAACTCAATAAATAAATTGGAAAAATAATGATCAATTAAATATCACATATACTCTTGTATTCTTTCTCGTGTTACCTAATTACCCTCTTATATAAATGAACGAAAGAAACAGTGTTTAAAAGGTTAATTTTGTGTTGAAAAAAAAGGTTAATTTTGTATAGTATTTCAAATTTTATTTTATAAAAATTATTTTTACAACACTAACAAGTATCCATGGGTACCCGCGAAGGGATAATATTCATTTAATACCCGCTACGCGGGTACGAGGCGGGTCTCATGTTTATCTCGCGGGGCGGGTAGCTGGTACCCGTGCCCTCCCCGCCCCGTTTGCATCACTTTGATTCTCAATAAGTCTTATTTGATTTCTTTGATTATCAAATCCTAATACATATTCTCATGGTTCAATAATCTTTGTGTTCGGTCTATCTCCTACCTATGAAATAGATAGGAACACCTAGTAACAATGGTCTTATTAATGGAAGTGTTATTTGAGCTTACAAGTAGGAGGAGAACACAAATTTTTTCATAATACTAACCTAAGAAGCTATTTGAAGTAGTATTTGAGCTTATAACTTATAACATTTAGTCTGTATTATAAAGAATAAATGGTTCAATTCTCGATCTCTTTTATAAACAAAAGTTAGCCATGTTTACTATATTTAATGCTACTATTTCATATACACCATTTATAATTTTATTGAGTTGTTGGCAATAAAACGAAATAGAGATTTTAAAGAGGAAGAGGAAGAGGAGGAAATGAAAGAGGATGGTGTGGTGGTGGTGGTGGTGGTTGTGGTGTGGTGTGGTGTGGTGTTGAAGGGAGAAGATGATGGTGGTGGTGGTAAGAAAAAATGAAAGAGGAAGAGGAAGAAATGAAAGAGGAAGAGGAAAATGGAGAAGGAAAAGAAATGAAAGAGGAAGAGGAGGAAATGAAAGAGGATGGTGTGGTGTGGTGTTGAAGAGAGAAGATGATGGTGGTGGTGGTAAGAAGAAATGAAAGAGGAAGAGGAAGAAATGAAAGAGAGGAAAAAACGGAGAAGAGGAAGAAATGAAAGAGGAAGAGGAAGGATTCGGGTTTATAAAAAAAAATTACCCGTTAGCGACGGATTTAGCGACGGATTTCCCTCGCTAATGTCTGTCACGTGTCAAATCAACTGCAACAGTCAGTGGCACAATTTTCCAAACATTAGCGACGGATTTAGCGACGGATTTCCGTCGCTAATTCGAACCAAAATTTTCAAGTTTCGCGCCATGTTAAATCTGTCGCTAATTTAGCCAATTTCCGTCGCTAAAGACATTGTTTTCAATCCGTCGCTAATGCTGTGAATTTCCGTCGCTAATTTTGATTTTAGCGACGGACCACATATCCGTCGCTCAAATCCGTCGCTAAACACTGTTTTTTTTGTAGTGTTTTTTATTAAATATTAAAAAGGGCTAATTTTGTAAATTTGGTTAACTTTTTACATTAAAACTAGGCAATTAACTGTACATAATTAATTTTCTTAATCACCTAAAAGTCGTTTTTTCCTTCTTATAATAGATATTGGAGAGATTATATTGTTTCATTTTACTAATATTCTTATCTTTAATACGTTAATTAAATTACCCAATATTTATCTTCCATTAAATAAATGTATGCTTTCTCATTTTTAAGTGATAATTATTAATGTTCATTTTGTCATTTGTACTCTAGTTCAACCTCTAATTCTATAAAACACTTAGAATTCTATTCAACACGTATCTTGTAACTAAAAAATCTGCTAGTTTTTGTAATTACCAAAGCAAAATTGTGGAGAGCAAAATTTTAAATAGGTGTATTTTAATCTATATTTTATCTACCTAATATTTTCTTATTCTATATATCATTTGCTAAATCATCAAAAAATTTGGGATGGGGAGAGTATATTTTTATAAATAAAAAATCATTTTTTTTTCAACACCAAACCTAGTTTAAGTAAAAAGTGGGCAAGCAACCCCCCCAAATTAAATAAATACCTGCTCAGAAATTATTTAATGCGAACGCGCTTTTGAACAACTAAGTCCTAATGATTAATGATGTTCATGTCATGTCCCTAGTACTCGTTTTAATTTTAATATAAAGTTAATTAACCATCCATCCATCCAAATACGCGTGAAAATAATGAGCCCCACCTCAAAAACATAATGATAATTAAAGACCCTCAAACCTCAATCATAAAACCCCACCCCTCACTACCAATCCATCAAAAGAAGAAACATTTCTCATTGCTAGTCATAAGTCACTCTCATGTCACTTTAAAATTTCTTGTTGCCTTATTTTAGAACCCAAAAATCTGTCTTCAACGACAAAACTAACAACCACCACAAATTTTCCTATCTTGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00036.35	EF-hand_1	60	83	2.20E-33
PF00036.35	EF-hand_1	96	121	2.20E-33
PF00036.35	EF-hand_1	137	164	2.20E-33
PF00036.35	EF-hand_1	174	200	2.20E-33
PF13499.9	EF-hand_7	60	121	2.40E-28
PF13499.9	EF-hand_7	134	200	2.40E-28
PF13405.9	EF-hand_6	60	86	2.60E-27
PF13405.9	EF-hand_6	136	165	2.60E-27
PF13202.9	EF-hand_5	61	82	3.20E-27
PF13202.9	EF-hand_5	138	160	3.20E-27
PF13833.9	EF-hand_8	149	200	8.50E-19

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR011992	EF-hand domain pair
IPR002048	EF-hand domain
IPR018247	EF-Hand 1, calcium-binding site

trEMBL

trEMBL term	Description
A0AAN9EQY3	_

SwissProt

SwissProt term	Description
CML5_ARATH	Calmodulin-like protein 5

KEGG

KO	Description	Enzyme
K13448	calcium-binding protein CML

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G43290	Calcium-binding EF-hand family protein
Medicago sativa L.	MsG0280011105.01.T01	_
Oryza sativa L.	LOC_Os12g12730.1	OsCML28 - Calmodulin-related calcium sensor protein, expressed
Cucumis sativus L.	Csa002960	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000389.1	_
Codonopsis lanceolata	Cl_chr08_03240T	_
Arachis hypogaea L.	AH08G11180.1	Calmodulin-like protein 5 like

Expression pattern