Gene detail

Detail information of Am01G042420.1 Annotation

Gene ID	Annotation
Am01G042420.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042420.1	mRNA	Chr01	219511906	219514754	+

Sequences

CDS:

>Am01G042420.1
ATGGAATCAGATCTTGAGCAACAACAACAAGCACCGCCGGTAAGTTCTTCTGGTTTAACACGATACAGATCAGCACCGAGTTCATATTTCAACAATATCATTGACCGAGAGTTTTACGAGCACGTTTTTAATCGACCTTCAAGTCCAGAAACAGAGAGAAGTTTCTCGCGTTTTATGAACAGTTTGGGTTCAGAAGAAGATTCATCACTCGCTCAAAAAGTCAAGGAAGAACAAGTTATCAACAACAATGAACATGAACATGAACACGTGGTTCTTCAGCAGAGCAACATCAATAATAGTGATAATTACATTTCTGCCCCTACTCATCAACAACATCCTCATGGTTTTTATCAGAAGCCACCTTTGCCAAATGTTGGAAATCAAAATCATTCTTCTAATCTTATTAGACATAGTAGCTCACCAGCTGGATTATTTTCTCAAATTAACATTGAAAATGGCTATGTAGTTGGTATGAGAGGTATGGGAGAAGCAAAATTTTCTAATGCAAGGAGTTTGAAGAATCAATCAAACTACTCATCAGGGTTAATGTCGTCAATATCAGAAATTGGGGAGAAAAGCAACAGAGAAAATAATCTAGATAGTGAAGCTTTGGCTGAAAGTCATGGTAATGATTTTATCACAGATTATCAAGTTGGCCCCTGGGACGATTTGTCTGAAAATATTAGTGGTTTAAAAAGATTTATAGATCATGATTCAAAACCATTCTCCAGTTTAAATGCAACGTCTGCGACTCAGAATGAAAGTGGAGGACAGTCTCATTCACCTTTGGTTCATCAATTGAGTATGCCAAATACTTCAGCTGAAATAGCAGCTATTGAGAAGTTTCTGCATTTCTCAGATGCTGTTCCGTGTAAAATACGTGCCAAGCGAGGCTGTGCCACTCACCCAAGAAGCATAGCAGAGAGGGTTAGAAGGACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTAGTCCCAAACATGGACAAGCAAACAAACACATCAGACATGTTAGACTTGGCTGTAGATTACATCAAAGACCTTCAAAAAGAAGTACAGACGCTATCGGATTGTCAAGCAAAGTGTACGTGTTCACACAAGCAACAACAATAA

Protein:

Promoter(3k):

>AM01G042420.1
GTGCAAAAGTTAAAAAAATAAACAGAGGATCAAAAAATAGGGGGTATCAACGGGATTTCCAAAAAGTGAGGATATGCAGCTGCACACACCGGATCTAACCTAGATCCGCCCCTGGGCCTAGTCCGAAACAAAAAACTTGACAATACTCATTTCCTCACTAAACATAGAATCATGTTAGTAATTAGTTAGGAGAAGGGGGAATGATAGTTACCAGGATTTGAACCATCGACTTCCTTGTTGTAACTCATTCATGTCTCTTAACTCGTCAATTGAACTATCACAATATTAATTACAGGTTACGACAAAAGATGTAACATAAAAATAAAAAAGGAAAATCTCAATAATATCTCATGTTTACAGACCGGAGAGTAGTTTACAAGTAGTAACTCACCAAAAAAAAAAAGTTTACAAGTAGTGTAGTTATTCCACATTTGTTTAATCAAATTATATTATCTCAAAATTAGGTAAAAAGGTGTTTTAGTCTCACTTCACAACCACTCAAAGAGACTTGTTTTGTCTTTTAGCAGAAGTGCAGTGTGAAAATGTGAACAAAGATAATAAGATCTAATAATCAACGGTGTGTGAAATCAAAACCTTAGACTGTAATAGGCTGTAAACATGTGTTTACACTTGCAATTTTCGCTTCATTGGCCATAACTTTTGGACCCACCATGTTCAAATCGCAATTTTATGGAAGGCTCGTGCACTCGTTGCCATTTTAGCAAGAGTCAACTTTTAAGTTTTGAACTTTGAAGTTTTAAAAACTCACTGTCTTGCCTTCAAAAAAATACTGACAGTGTTGAAAACTTTTTTTAAATACGAAGATAAGTGTTTTGCAATATTGAATTTCAAGCTAGTTTACCTATAAGTTGGCATTTTTATTATGCGACCTCATTTCATGGATTGATGTCTACATCCTGTACTTGTTTACCTACAGCTATTGTGCTCCAATTCTTCAGTGACCTGGAAGCAGATTGTTGTCTGCTTGCGACCCGGAATGTTGATTTCTCCGACAAGATGTGGTTGAGTGCGACGAGTTTGAGTACCTACAAAGATACTCCAACGCTCAAGTTTTACATGACTGGAGTATTCATAGCGTTGGAATGCATGCTATGCTGGGAATCGTCTTCGATCTTAAGTAGGAAGCTGGTTTTTTTGAACTGACCTACCTAAAAGCTTGTTTAAAAGTGAAACTGGTAATGAACCGGTTTTAAAATGGTACCGATCAGGTTTACAAAAACAAACTGTTTTCACAAACAAATATACTTGAACCACTCTTTGAAAGAAGTTTAGTAGCGTGGTGTTTTTTTAATAGGCAATGTTAGTGGGGTGGGGGAATGTTAGTTTCCCGGGTTTGAACCTGAGACCTCCTGCTTGCACTCATTCGGTATCCCTTAACTCGTCAACTGAATGTGGTGTGGTTTTTGATAGTACCATGCACACCCCTATTTAGGGGCCCCTAAGGGAGGCCCATTGCAACTCAATAGATATGGCCAAACAGTTTTTGGCTAGCTCAACTAGGTCTCAAAATCGAAATGCTAGCTAACATTTTGTTCCCTTCTCATAGCAATCACCTACATAGTCTCTTTACCCCGCCATCTATACCAATTACACAAGAAGTTCTATAACAATGATTGAGCTAAGACTACATTGGGTCTCACCAGACATTTCTAGTGCACTACCTTCCTATATTCGATGAAATATAACCATGAATAAAATCATTCACACTCGACTATAAATATAGATAAATCGTAAGGCCTGGTATAACTCGGAAAACCAATGTTGTTAAGTTGTATATTTTCTGTAATTACTTGAGTTCAAACATGATATCTCAATTTTTGAAAATCTTCAAGTGAAGTGTTTTTTGTGGACTTCAAAATTCATGGACAAGCCCAAATACAATTAATTCTTTGACTCACTTACAAACAATCCATATTGTTGTGCTATATTTAAAAATTATAATAAAATATTTAATTCAAATTCTTTTAAACATTGTCTTAACTATATTAAAAGAATTAAAAGAGCGTAATTTATATACTATATATAATTGAGTAGATTTTTTCTTAAAAATTTATATTAACCATTTTTTATGTTAGTTAATTTTAACTTCGTTTTTAACGAAATCTTGGTTATTGCTGTGCACGAGTCTACTACCTGCGGTGTGTGATGCATATGTGCAGGCAATAAAATAAAGACACTTCATCACTTGGTATGAATCCTTCCCATTTTTATCAAAACCTAGAAAGCTTTCTAAAAACAGCAGAAACTTTGGTTTTTATTCCCAAAACACCGTGGGAAGTCCTCACGTGTCACGCTCGTTTTGTTCCCAAAACAGAGGGCACTATAGGAAAATGAAATATACCAAATCGTTGATTTATTGCCATGTATTCCACTTTTCATTGGCTGCACTGCACAACAAGAAAAATAAACAAAATGTTTTTTTTTTCTTTTTCTCTTTTAAAGCCATGTCCATTCTCCACCACCACATAGAACACACAAACAAAAGAATAAAAGGCTTTTCCTCAAAGAACCAAGGTGTGTGTTCTTATTTTCAAAAGAACTCTATTTTCATATTTACTTTTTACAAAAAAAAAAAAAAAAAAAAATCAACCGTTATTTTTGCTGCTAGTCTTCCTCCGGTGAATCGAGTGCTTCATTTTCAGAAACAGAGAACACCCTGGTCCAGCTATTAATTTATCAATCTTTTGTTGATAAGCTAAATAAAATAAAAAGTCATATTTTTCCAACCACTGATTTTTATTTATTTATATTATTTTCTTTTCCATCACCATCTCTTTTCATTTTTTATTTTTCCATTCCGATGCACTATCTAGATTTCTCCTGATTCCGATGCACTATTACTGCACAGTTAGTACTTGAGAGTCCAACAACAAACAAGAAAGTGAATTTTATTTTATTATCTATCTAAATATAGAAATATAGATAGATCTGATAAAATTAGTGAAGAGGGAGGGTTGTGGAAATCTTCTTCTGTTAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00010.29	HLH	304	350	6.00E-10

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Gene Ontology

GO term	Description	Category
GO:0046983	protein dimerization activity	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638	Helix-loop-helix DNA-binding domain superfamily

trEMBL

trEMBL term	Description
A0A8B8KC39	_

SwissProt

SwissProt term	Description
BH122_ARATH	Transcription factor bHLH122

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G51140	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Medicago sativa L.	MsG0480021094.01.T01	_
Oryza sativa L.	LOC_Os08g39630.1	helix-loop-helix DNA-binding domain containing protein, expressed
Cucumis sativus L.	Csa006466	_
Glycyrrhiza uralensis Fisch.	Glyur000677s00026180.1	_
Codonopsis lanceolata	Cl_chr06_02680T	_
Arachis hypogaea L.	AH08G13010.1	Transcription factor bHLH122 like

Expression pattern