Gene detail

Detail information of Am01G042410.1 Annotation

Gene ID	Annotation
Am01G042410.1	FAR1-related sequence 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042410.1	mRNA	Chr01	219477459	219481780	-

Sequences

CDS:

>Am01G042410.1
ATGGATTCTCCTGTTGTAATGGCTAGCACAATTTTGGAGCCTCATGATGTTATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAGGAATATGCCAAGTCGGCAGGGTTTGGTACTGCTAAGTTGAGCAGTCGCCGGTCTAGAGCATCAAAGGAGTTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGTCCTTCTCCGAAAATTGGTTGTAAAGCTAGTATGCATGTGAAGAGAAGACAAGATGGTAAGTGGTATGTCTATAGCTTTGTCAAGGAGCATAATCATGAGTTGTTGCCTGCTCAAGCTCATTTCTTTCGGAGTCACAGGAATTCTGATCCACTAAGTAATGATGTTCGGATGCGACGGCGGAAGAATTCAACTGTAGGTTGTAAATTATTTGGTGCATACCAGAATGTTGATTGTTTAGAGAATCTTTTGAAACATCAACATGACAAAGGAAGAAGTTTGGATTTAGAAGCAGGGCATGCCCAGTTGCTTCTTGAACTCTTCATGAACATGCAGGAGGAAAATCCAAAATTCTTCTATGCAGTTGATTTAAATGAACAGCACAGACTCAGAAATGTGTTCTGGGTTGATGCTAAAGGGTTGGAAGATTTTGTATATTTTGCTGATGTTGTTTCTTTTGACACAACATATTTCACAAGCAAGTATAAAATACCTTTGGTACTTTTCATTGGAGTTAACCATCATATTCAACCAACATTGCTTGGATGTGCATTGATTGCCGATGAGACGGTATATACTTTTGCGTGGTTATTGCAAACATGGTTTGTAGCAATTGGGGAACGGGCTCCACAAGTGTTTCTGACTGACCAAAATGAGGCTCTTAAAGCTGCTGTTGCTGCTGTTTTACCAGGAACACGTCATTGTTTTTGTTTGTCGCATGTTTTGGAAAATATACCAAAACAACTTGACTTTTTAAGCACATGGCATGATAGCTTTATGGAAAAGTTTAACGAGTGTATATATAAATCATGGACAGAGGAGCAATTTGAAAACAGATGGTCGGAGCTGGTTGATAGGTTTAACCTTAGAGATGTTAAGTGGATCCAATCCTTGTATGATGATCGTGCATATTGGGTGCCAACTTTTATGAAAGATATTTCTTTTGCTGGTTTGTCTGCTAGTTCACGCTCAGAAAGTTTGAATTCTTTGTTTGACAAATATGTCCAAGTTGATACTTCATTGAGAGAATTTACAGAACAGTATCAACTGATTCTTGAAGATAGGCATGAAGAGGAAGCCAGAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTAAGGTCTCCTTCCCCTTTTGAAAAACAATTGTTGTTAGTTTACACACATGAAATCTATAGAAAGTTTCAGGTCGAGGTTTTGGGTGCTGCTGCTTGCCATCTGAAGAAAGAAAATGATGGTGTGATAACTATTTACACTGTGAAAGACTTCGAAAATAATCAGAACTACATGGTAGAATGGAACACATCAAACTCAGATATATGTTGTTCTTGTCACTTGTTTGAATATAAAGGTTACCTCTGTAGACATGCTATTGTCGTTCTACAAATGTCTGGTGTTTTTAGCATCCCGTCAAAGTATATATTGAAAAGATGGACAAATGTTGCTTTAAGTAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCCAAGGTCCGGAGATTCAATGATTTATGTAGGCGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTTCTATATTGCTTTAGGTGTCGTAAGTGAAGCTCTAACGCAATGTGCAACTTTGAACAATTCTGTTGAGAATGCAGCCTTTGCTACCAATGTTGTTTGCAATACTGAAGAAGAGTATCAATCTATTCCAACATCTAATGATAAGGCCCCTGATCCAAAAATGGATATGGGCAAGAAGGCTGTGAGGACTGGTATGGCTAGTAGGAGTCCAGAAAGTGTTGAAAATACTGAAGGAAATAAAGGAAAGGTATTACCTCAGCTTGGAGCAATAAGTGGGAAAGATACTTTTCAACAAATGGAGGCCACTGATCTGAGGTCACATAATGTCGTGCCAATGCAGTTTCACACTATGGTACCGGCTCTATTCCAGAATGTTTCTTCACCATTTCATACCGCAGCTTCAACTCATTTGCATGAGAATCGTCTTCCTCCTTAG

Protein:

Promoter(3k):

>AM01G042410.1
TGATATTTTACGTAACCACACTATTATCAAATTTAACGATAAACAGATTGTGATATTGAATGCGGCGCAATGAAATCAAATATAACGATAAACAAATATAAACAAAAACAAAGTAAAGAGAAGGGAAATAGATACACCGTGATTTTTACGAGGTTCGGGATAAAAGGCCTACGTCCTCGGTCTCCGGCTTTGCAACCTTTGGATTTGTGAATAACCACTATATGAGAAGAACTTCTTCAACATTTTACAAGCAAGCAACTTCCCTATAGCTACGACACCACTCTCAATTTTCCCAAATTGAGAACCCAAGCTCCCAGCTAAGGATTTCGCTACCAATCCAATCTCCCCGATTGAACGACCCAAGAACACTTCCCAGGATTTCACAACAACCAAGTGGTAGATGAATACAACAGAGAAACTATGATCCAATCACTCAAGCAATATAACAGTATAGTAGTTGAGAGAGATGAGTGATTTGGATTTTATGATGAAGAATTTGAAGAAAGAATATGACGGCAAGAGTTCTTTTTCTTCTTTTTGATTTTTGAGATGTGCGTTGTGTTCTCTCCCCATTCGTGAAAAAAAACCTGAGTGCCTATTTATAGGGTTTGTAGAAATATGACCATTGAGGCAATTTTTCACGTAAAATAGATGAGTAGTGAATCGATTGATTGCTTAAAACAATGGAATGTAAATCGATTATTTACTCAAAAATATGACCGTTGATGGCTTCTAAAAAGAGATGAATCGATTATGTGCTTAAATAGGAGTGTATAGAAATCGATTCATTGCTTGAGAAATAAGAAGGGTGAAATTGATTTATGGCTTTAAAAGATAAGGAAGAAATCGATTTTTCTCTTCACAATAGCAAGTGAAGAATCGATTTTTTGCCTGTGGGAAACAGGTGAGGAATCGATTCGTGGCTTTAAAAGAGAGAGAGAAATCAAATTTTCCATTTAAAAACACAAGGCCGTTAATCGATTGTTTTCTTTCCAAAACATATTCCTTTTAAAAACCCATAGGCTAGAAATCGATTTCTAGCTTTGTGAAGGAAGCCACAAATCGATTTCTAGCTTGAATAATTAGGCTAGAAATCAATTTTCAACTTATAGACACAAAGGCATCAATCGATTCTTAGCTTTACCATTTTCTCATGCTACGTGGCTACCTATTAGGCTTTTATATAAAAAAAATTTCTAGGCTTTTAACACAACAATTATATTTTAAAAAATCATCTATCAACTACTAAAAGTTATAAAAGTGATAGGATCTTACATGGTGTCCTATCAAAAGCAGATTAACAAATAGTGCTTGAACTCTAGAATAGCTTCTCCTCCAAGCCGCTACACTTTAAGATATCCCGCTCTTTGATTCATGTCCTGTACTTTTGTTCAACTGTAACCATTAGTAGACAGATTGTAATTTGTTATCATACAAAACAAAGAGTGTTTGTCTTTGGTTCAACAATGTGTTCCACACCCTTAATATCCATCCTCCAAGCTTCTTGATAAATTTTCCTTTCAATCTAAACTGACAGCAACATTTCCTAGTGTTTGTTCCCTCAACTAAACTAGTCCTATAATTTCCACCTTTTCCATAAATCAACGTGCAAAATTCTTTACCTGATCGCTTTCCAGTGTCGGATCTAGATATCACAATCACCATCCCAAGAGACCTGTCGACGCTACGTACCCATGTCAACAACTCTTCGCGGTTTGTAAACAACTGAAAATGAAAAATTAAATGTCATTTAAATACTTAGCCAAATTACCTTGCAAAAAAGAATGAATGTTCCGTACCTTATCCGTTGTGAAAGAACTCGTAAAGTCTAGTACCATCAACGCATAATTTCCTTCCATTTATATGATCCTGTAATAAAAAAAATTCAAACAGAAGTTACTGGAATTTCTGGAAAACGAATGTTCGGCTGCCCTATACCAAACACGTTTGGTTCCCCTTGAGTGAACGTGTTCGGTTTTCCATTATCGAGTGACCCACGAAAATGAACACCCCCAAATGTGATTTTACAACGTTCGGTTAGGCCTAACCGAATCCGTTCGGTTGAGGGCAACCGAACCGAGCGCGATTTCAAAAGGAAAAAAACCCAAATGTAGCAACTAAATGAGATGAAAATGAAAAATGTTTGGTAAGTTGGTAATTTCATAGGGTCAAGGGGGGTGTGGTGAGTAGGAGGGGATGTGGGAAAAGTCAATCCCTTTGAAAAAATGGTATTGGGCGAGCCCATTACAAGCTTAACCCAAACCCAAGTTCTCAAAGTTTTTGTCATCTCTGAGTGACCAAAAAAATGTCATCTCTGCTTTCTTTCTATTTCTAATTTCTCAAATATGCGTCTTCTTCTCTCCTTCCTTCTACTTCACTGTTCTCTATTCTTCTCTCTTCTCTCACGTCTTTCTTCTTTCTCGCCAGAAACGCAAAAGCTACCTAGAAACCGAATAGTTGGCCGGAAAGTCTTGCCGTAGCGACCGCAACAGGACATTTCCAACGCGATTCCGGCGCGATTTGCGGCTGCGATCGCCGCACCTGAAAACTACTCCGCACCGGCACTTCGTGCCGCAGCACACCTTGATTCCTCTGCGCTGTTTCACAATCGCACGTCATCCCGATATCAACTACATATAAAGTAAGATTCCACTAAAGTAGATTGATAAAGAAAATTATGCATAAATATATGGTTAATTGGTAGGTAGTATGGAATTCTTAGTTTCACGTTGCATTTTTCACAGTGTTTTGTCAGTTTTCTTCAAATCTTGAGCTCTTGATTTCTTTTCAAACAATTGCATAATTATATCTGAGATTTTTTCCCCATACCTGGTGTATTTTCTCAATTACAAAGCATTGTCACTTTATTTACATATCATTACTACTGAATTGATTATTGAGGAAAACTGCTGTTTCTTTTGTATGATTAGTATCTTGGACATGTGAAACATTGTTTTGGAAGCTGTGTGGATCTGAAATCCGAATGTTACTGCAATAAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03101.18	FAR1	29	114	1.50E-29
PF10551.12	MULE	227	321	4.60E-26
PF04434.20	SWIM	512	540	3.60E-08

Gene family

Gene family	Subfamily
Transcription Factors Family	FAR1

Gene Ontology

GO term	Description	Category
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0050661	NADP binding	Molecular Function
GO:0051287	NAD binding	Molecular Function
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Molecular Function

InterPro

InterPro term	Description
IPR007527	Zinc finger, SWIM-type
IPR006564	Zinc finger, PMZ-type
IPR018289	MULE transposase domain
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain

trEMBL

trEMBL term	Description
A0A1S2XEE0	_

SwissProt

SwissProt term	Description
FRS4_ARATH	Protein FAR1-RELATED SEQUENCE 4

KEGG

KO	Description	Enzyme
K17604	zinc finger SWIM domain-containing protein 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G76320	FAR1-related sequence 4
Medicago sativa L.	MsG0780037883.01.T01	_
Oryza sativa L.	LOC_Os12g24870.1	SWIM zinc finger family protein, putative, expressed
Cucumis sativus L.	Csa013491	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000430.1	_
Codonopsis lanceolata	Cl_chr06_02600T	_
Arachis hypogaea L.	AH13G57500.2	Protein FAR-RED ELONGATED HYPOCOTYL 3 like

Expression pattern