Gene detail

Detail information of Am01G042370.1 Annotation

Gene ID	Annotation
Am01G042370.1	Integrase-type DNA-binding superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042370.1	mRNA	Chr01	219283858	219286594	-

Sequences

CDS:

>Am01G042370.1
ATGGGGTCAATGAACACAAACAACTGGCTTTCCTTTCCTCTTTCTCCAAATGATCATTCTTCATTACCAGCTCATCTCCAAGCAACTCAATCTCATCATCACAGCAGCAACGAAGTTCCAAAGGTAGCAGATTTTCTAGGTGTGTGCAAGTCAGAAAATCAGTCAGATCTTGCAGCCTTTAATGATATTCAGTCAAATGAACATTCAGATTACGGCTTGTTCAGCAACAATAGTCTCATGCCTATGCAAAACTCAATGGTAACAGCCAATTGTAGCAACAATAATTATGAAAATCAAGAAAGTGGAAACAATAATCTGCAGTCATTGACATTAACTATGGGGAGTGGTAGTAAGGATTCAACATGCGAAACCACTAGTGATATTAGTACCAATACTGTTGAAGCTGCTGCTGCACCTAGAAGAACTTTAGAAACCTTTGGACAGAGAACGTCAATATATCGTGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGTTGTCGAAGAGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTGGGTGGGTATGACAAAGAAGAGAAAGCAGCAAGATCTTATGATTTGGCTGCACTAAAGTACTGGGGAACATCTACCACTACCAACTTTCCCATCGGAAACTATGAGAAGGAATTGGAAGAAATGAAGAACATGACAAGACAAGAATTTGTTGCCGCCATAAGAAGGAAGAGTAGTGGATTCTCGAGAGGTGCATCTATGTATCGAGGAGTCACGAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGTAGAGTGGCGGGAAACAAAGATCTTTACTTAGGAACTTTCAGTACGGAGGAAGAGGCTGCAGAAGCTTATGACATTGCGGCGATTAAGTTCAGAGGTTTAAACGCAGTGACTAACTTCGACATGAATCGTTACGATGTGAAATCCATTCTTGAAAGCAACAGTCTCCCAATTGGAGGAGGTGCAGCAAAAAGATTAAAGGAAGCACAAGCTCTAGAAACTTCTAGAAAAAGAGAAGAGATGTTAGCACTTAGCAACTCTAGCGCAGCTAGTTTTCAATATGAAAATGGAAGTTCTTCAACTTCAAGTAGGAATTTACTAGGCTACCCTCTAATTCAGAATCAATTTGATCAACAACCCCAACGTTTGCTAACCCTACAGAATCATGATATATCTCAGTACGACACGACGTCGTCGTTTCATCAGAGTTATATTCAAACACAGCTTCAGTTACACCAACAGCAAAGTGGAGAATTTTATAATGGTAATAATAATTACATTCAGAACCATCAGGGTTTGTTTCAAGGGTTGATGGACAACAATGGTGGGAGTTATAGTGGAGGGTATATGGGGAATAATGATAATAATAGTGGGATTGGAATGGGTTCGAGTAATGATAATGCAGTGGGATCAACGGAGGAGGTAGCGCTTGTTAAGGTTGATTACGACATGCCTTCCGGAGGTTATGGTGGCTGGTCGACGCCGGATTCCATGCAGCAACAAGGTTCAAATGCTACTAATGTTTTTACAATGTGGAATGATTGA

Protein:

Promoter(3k):

>AM01G042370.1
AGGGCCATGGCCCGCCCCAAAAAATCATGTGTAATCACTAGAATACCCCTAATTTTAAAATTATTTGTATATTTATCTATTTTAATTGTATTTGTGTTTGTGTCTTTGTTATTGTATTTGAATTTTCATGTCTCTTTTATTAGCGACCCCCCAAACTTTTTAGTCAAGATCCGCCACCGACTTCAGTAATGAGTTTAGCTTAACTCTACATACTTTTTTTTGGTTACAAAGGTTAAAAAATAAAAAGGAAAAAAGAGGCCTAAAGCCTAACAAAAGAGGTGCTCATCTCATCACACAAAAGAGCAACCAAATCTTGAGGAGGAGCAACCAAATAATGAGTTTAGCTTAACTCTATATACGTACTGATTTGTTTTTGACGATTACAATATATTAATTTAAGCTGTATACTTTATATTTTATAGCAAACTTAATATACATCTGTGTGTGTACCTTATATATTTTCATTTAGCGCATTTGTGCTGCAATTGCGGTACGTATGTTACGGGATCCAAGCCTAGTTTGAAGCCTTGTCCTAGTAGACATCTACTACTAGCTAGTTCAACATTCCGTATATTGTTGAGCAGTAGCTAGCTTAATAAACCAAGCTTAATTAGACATTCCATAATATCTGAGTTTTGGGCCATCTTCTGTAATCATTTCATTGGGACATAAATGAAGATACATTTGGTCAGAAAAATCTTCTAGAGCGCAGTACATGATTGCTAACAAGATCTTTAAATTTGTGTATCCTAGATAGTAGATATGGGCCTCATAGGTTGAACCTCAACTCAACCAAAGCATAATACAAGTATCTAGTTCTATAACGTGGGTGTGAGACATGAACCTGACTAGTCATTCTTTATTTTATTGTTAATTAATTGTTATAAGTTAATCTTAAACTTATTTCCAGCTAGCTATTAGTTCCCTTTTGACTAGTGCAGAAACCGAGTATTTGGTCAACAGATTTCTACTTGGGGGAACAATATTTTTTCTTTGACGCAAATTATACTAGTATTTCTTAATTACTGTTCAATTAATTAACATTATGGAGCACAGCTTTGTGCTATTTTGAACAAGAGTAATTCTTACTCTTTCTTTTACTACTTTTAATATTTAATATGTCGGATTTTTTCATAAAATACTGCATGTCCGTACACATGCATCTTTAACACGTGCAGGACACAGGGATCCACAAACTGGGTTTCCTATAGCAAATGTATACACACTAATGGAAAAAAGGCTTTTTATATCGGTTAAAATTGACATTTCATATCGGTTCCCGAACCGATGCCAAAAAAGGAGATATAAAAAATAGGGACATTTCATATCGGTTCCTGAACCGTTATGAAAAGTTGTTTTCATATCGGTTGCCCCTAGAACCGATATGAAAAGTCTCTGTTTTTTAAAAAAAAATGATTTTTAACATCGGTTTTATATGGGAACCGATATGAAAAGTCTCTTTTTTTTAAAAAAAAATGATTTTTAACATCGGTTTTATATGGGAACCGATATGAAAAGTCTCTTTTTTTTAAAAAAAAAAATATTTTTAACATCGGTTTTCTATGAGAACCGATATGAAAAGTCTCTTTTTTTTTTCAAAAAAAAAAATGAGGTTGTCTTCCATCAACTCTAGATCCTTCTGTAATAATTCTTTTACGGACCACGTATATAGTTTTTTTTTTGACAAGACCACGTATATTGTTAAATTCCCAAAAACCTATTAATTTAATGAAAAAGTTAGGGCAATTTGAATCATATAGCTAAGTAGTGCATTAGGGGAATTTGAGTCATAAAGAAAAGTAATGCAATTTGCTATTGCTTGCACTCATTTGGTGAGGTCCTTCGGTATCCCTTAGCTCACCAACTGAACTACCTATTTGGGATTCGTTTAGATTGTAATGGTAGGTAGGCATGGCGTGACTAGTTGGTGCTACTAATGCCAGCTGCGTACTCGTCCTTTAGGTTTCTCTACTCACCATTATTTTTAATGGCAAAATGTTATATATAAGATGGGGTATTATATGGGTGCACCAACCCATACCGAAAGAACTAAATTAAGTCTAATTAATTAGAGGTAATTACAAGAATGCCCTACAGGGAGGGAATTGTCATATGACAAGAATCACCTCCAAGACAAAGATCGAATGCCGTCTACTAATTAGGGAGTCGAATGAGACACTTTCCTTATCCTAGCAAAAATGCAATTATTCTAAGAATGTAGTTTAGTTGACAAGTTAAGGGATATGAAGAAGTTTGTCGAGAAAAAAAAAGTCTGGGTTTAAACTCTGAAGTCTACTTTACGTAGAGTGACTGATTTAGAGATTTAGAGATGATTTGCAGAGTGTGGGAATGCTGGGCTTTGGGTAGTCATTACTTTCACATAACGAGGACGAGAGTTCCAATAAACCAAGTGGGTATAGAGAGAGAAAGAGAAAAGAGTTGGACTTTTCCAATTGGAATGCATGGTGGGTTTGTCTCTGTAGAAAAGAAAGACCGGAAGTCGTTGTTCAGTATTCCACTCGTGTCTTCAGATAATATTATTATTTAATAATCATTGTAGGCAGATTATAACTTTGTTTCTTTTGTGTTGGATACTGATGGAAAGGGTCAGTGTCTTCAAAAAACAACTTTCACAAAAGGGGTGAAGACAGGCACCCATTGCTCATTTCATTTATTTAATATTTTTTGTTAACACTAGCTAGTAAGATAGAGAGAAAGGGTGTACTTTAAATATTATGTCCCTTCCTCAAACTCTTTTCTTTTTCAGCCCCTCTTCTTCCCTACCCTTTTATTTTAATTACTCTAGAAAGCTCCAAGGTTGGGAGAGAAATATCAAAAAGTTCACTGCTTTAAACCCTAGCCAATACCCTTCCTTGGTAAACCTATAACTATGAACACTCTTCTCATCACTTTCTCTTATATATGTATCTCTTCTCACTTTTTGTTTTAGATGCAGGTTTTGCTTAATTTGTATATTGAAGCACAAAGGAAAAGAATATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00847.23	AP2	152	210	6.40E-21
PF00847.23	AP2	255	304	6.40E-21

Gene family

Gene family	Subfamily
Transcription Factors Family	AP2

Gene Ontology

GO term	Description	Category
GO:0008017	microtubule binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0006952	defense response	Biological Process
GO:0009873	ethylene-activated signaling pathway	Biological Process
GO:0007018	microtubule-based movement	Biological Process

InterPro

InterPro term	Description
IPR016177	DNA-binding domain superfamily
IPR036955	AP2/ERF domain superfamily
IPR001471	AP2/ERF domain

trEMBL

trEMBL term	Description
A0AAD6WA71	_

SwissProt

SwissProt term	Description
PLET2_ARATH	AP2-like ethylene-responsive transcription factor PLT2

KEGG

KO	Description	Enzyme
K09285	AP2-like factor, ANT lineage

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G51190	Integrase-type DNA-binding superfamily protein
Medicago sativa L.	MsG0280011046.01.T01	_
Oryza sativa L.	LOC_Os01g67410.1	AP2/EREBP transcription factor BABY BOOM, putative, expressed
Cucumis sativus L.	Csa010498	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000434.1	_
Codonopsis lanceolata	Cl_chr06_03170T	_
Arachis hypogaea L.	AH18G03520.1	AP2-like ethylene-responsive transcription factor PLT2 like

Expression pattern