Gene detail

Detail information of Am01G042090.1 Annotation

Gene ID	Annotation
Am01G042090.1	zinc finger (C3HC4-type RING finger) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G042090.1	mRNA	Chr01	218027468	218029373	-

Sequences

CDS:

>Am01G042090.1
ATGAACTCGGACACGCCACTCTCCACGGCGTCGTTTTGGTGCTATAGTTGTAACCGCTTCGTTAACCTCTTGGACCAACACGACGTCGTTTGTCCGCACTGCCAAAGCGGGTTCGTTGAGGAGATCCACGCCGGTCAGTCCCCAGCGGTGTCTCTCTTTGCCGACGGTATTCACACTTCCAGGAGACAAGGCTTACGCCGGAGACGTCGCAACGCCGGCAGCCGCTCGCCCTTCAATCCCGTAATCGTTCTCCGAGGAGCAGGGGAAGAAGCCGGCGGCGATAGTGAGGGGAGTAGTTTCGAATTGTACTACGACGACGGCGACGGCACCGGTCTCCGACCACTTCCACCAACCATGTCAGAGTTTTTGCTTGGTTCAGGCTTCGATCGGTTGCTGGAACAGTTCTCTCAGATCGAAATCAACGGTTACGGACGAGCAGAAAACCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGGCAACGGTGGAGATCACGGAGGCGGAGGTGGAAGCAGAAACGCACTGTGCGGTGTGCAAAGAAGCGTTTGAGCTTTGTACGGAGGCGCGTGAGATGCCTTGCAAGCACCTTTATCACTCCGATTGCATTCTCCCATGGCTTTCAATGCGGAACTCGTGCCCCGTGTGCCGCCACGAGCTTCCATCCGATCAAAACCCTCCGGAGACAAGAATCGCCGGTCAGGTCGATGAGGAAGCAGTAGGATTGACTATTTGGAGGTTGCCGGGAGGCGGATTCGCCGTAGGTCGATTCTCCGGCGGTCGTAGAGCCGGCGAGAGTAACTTGCCGGTGGTGTACACGGAGATGGATGGTGGTGGTGGGAACAACTCAATCGAAGGTTCGAGAAGAATCTCATTGGCAGTGGAGGACAATAGAGTTAGGGAGAGGCGTGGATTTCGCAGAATTTTTCGAAATTTCTTATCAATGTTTGGGTCCGTTAATTTAAACCGTAGCCTTTCACGTTCAATGTTCAGTAGAAGTTCACGGAGAAGAAGCAGAACTTATTGA

Protein:

Promoter(3k):

>AM01G042090.1
AGGAATATGGTATTGATTATGATGAGACCTTTGCACCGGTTGCTAAAATGACTACTGTTAGAATGGTGCTCTCTATAGCTGCTTCTAATGGGTGGTCTCTCCACCAAATGGATGTCAAGAATGCATTTCTTCATGGCGACCTGACTGAAGATATTTATATGACTCCCCCTCAGGGCCTTTTCTCTTCATCTAAGGGGGTGTGCAAGCTCAAACGATCTCTATATGGTTTGAAACAGGCACCTAGAGCATGGTATGCGAAATTCCGTTCCACTCTACTTGGGTTCTCTTTTACTCAAAGTCAGTATGATTCGTCTTTGTTCATTCACCGCACATCTACGGGCATTGTTCTACTCCTTCTTTATGTTGATGACATGATCATTACCGGTTCTGATGCAGCATCCATACAAGAAGTTAAACAAAAGCTTCAAGCCTCATTTCAAATGAAAGATCTTGGTCTGTTACATTATTTTCTTGGACTCGAGGTTCATTCTACTCCTAAGGGCATATTTCTCCATCAGCATAAGTATGCCACCGACCTTATTGCTATGGCTGGCCTCGAATCTGCTAATCCTGTGAATACTCCTCTTGAAGTTAATGTTAAATACCACCGTGACGAGGGTGAACTTTTGACTGATCCGTTATTGTATCGACAGCTCGTGGGTAGTCTTAACTACTTGACCATTACTCGCCCAGATATTTCATTTGTTGTTCAGCAAGTAAGTAAGTTCATGCATTCTCCTCGTCATCTTCACCTGGCAGCGATTCGTCGTATTATTCGCTACTTGAAAGGTACCTCTCAACGGGGTTTATTCTTTCCTAATGGAACACCCCTTACGTTGAGTGCCTACAGTGATGCTGATTGGGCTGGGTGTCCTGACACTCGCCGCTCTGTCACGGGTTGGTGCATGTTTCTTGGTTCTTCGTTGATCTCTTGGAAAAGTAAGAAGCAAGCGAGAGTCTCTAAATCCTCAACCGAATCGGAGTATCGTGCTATGTTAACGGCATGCTCCGAAATACTTTGGCTTCGTGGTCTTTTGGGTGAACTTGGATTTCCTCAAACCGAACCGACATCTCTCTATGCTGACAATACAAGTGCCATTCAGATTGTTGCAAATCCGGTTTTTCATGAGCGTACTAAGCATATCGAAGTTGATTGTCATGCAATTCGTGAAGCCTACGATAGTCACGTTATATCCATCCCTCATATCAATACTCAATTTCAAGTTGCAGACATTTTGACCAAAGCTGTTCCTTCTCCATGCCATCAGTTTCTTGTCAGCAAATTGAAGCTCCTTGATGACCCGCATCAATTTGAGGGGGGATGTGAATAAGGAATAAAAGAAGGCTGTAAATAGTAGTTGTAGATTTATTTATATGCTTATGCTTTGGGCCAGGCCCGTTAGGTCTTATTAGAGAAGGCTATTTAAACTCTCTTTTACTTTGTATTCAGATCATCGAAACTTTATCAATAAAACGGAACCACAGCTACTCTGTAGTCGCAGACGTAGGCAATCTTTGGCCGAACTGCGTAAACAATATCGTGTGTTATGTTTGACAGAGCCATAACTCAAATTCTCCGAATGACTAATCTTCGCTCGTGCTTAGGATCATAACTCAAACTAATCTTGGTATGGACCATTGTTGGCTACCCACAGAGTGTCCCAACGCTTTCAACGAAAGACTAATCTTCGCTCGTGCTTAGGATCAAATTTAGTACTGGCCAACACCGAGTTTGTCCACTGCGGGAATCGAACCTGGGAGCACCGGATCAACCCCCCGTGTCCCAAGGTAGATTAAGCCATTAGACCTGCATTTGGTGTGTGACATTGCCTCAAACATATTTTCTATCAAAAATGTGAGAACAAAGTATAACTCTTCCATGAAAACATACTCTGGGACAAACTCAGTGTTGGCCAGTTAAAAATTTGCTTTTAAGCACGAGTAGATATTAGTCTTTAATTGAAAGCGTTGTGACGCTCTATGGGTAGTCAGCAATGGTCCAAACTAAAAAAGACTATATTTTATCCTAAGTAGGTAGCTCAGTTGGCGAGCTAAGGGATATCGAAAGAGTGTACCAAAAGAGTGCAAGAAGGAGGTCCCGGGTTCAAACCCCAAAAACTAACACTCTCCCACTCCACTAATATTGTTTATAAAAAAAAACTATATTTTACACAAACCATATTTAACCAACCCCGTACATCGCACGAGTATTAGAGCTAGTAACTAATATAAAATTGTTACACAATGCCACATCATTTCTAAGTAAATTTTAAGCAATCTAGACAAATTTTGCTCCAATAGAAATGCTCTAAGTGTTAAAATTTTCATCGCATATATATGGGCGGCAACAAAAAGCCTAATAATGGAAGGAAATCGCATTTATTATGATCTAAACCAAATAGACAAGGCGCGCGTGAGAATAGTGTGAGAGGTGGAGTACAGTTGTTGTGAATGAATGGGATTAGAGCAGTAAGAGCAGGTGTACTGTATGGTTTAAGAGCAGCCAGCCAGCCAAGTCCCCGTGGCCTGTCTCGTTTAAGGTAATGAAATGAAGTTATCGCCCTTTGATTTTTTATTATTGATTTTTGATTAATGTAGCTCGCTCTCTTCTATTGTATTTTTCCTTCATTCCATTGGCTTGGGGCCATTTACTGACGTCCCCATTTCAAAAATCAACTACTAATATTTAATTGGATAATTCTGATTAATTATTCCTAGTCCTAATAATCCCACGAGCCTCATCCTTAACTCATTTCTTTATTCAATAGAAATTCGATTGAGGCATTTAATTAATTAATGCTAAATCAGAAATTGCTATGTATTTTCCAGCGGAGCCAGAGCGTATGCCTAAGGGTATTGCCCCCCGTAGCTCAAAAAACGCGTGCTTTAACGCTTTCTTTCTTCTTTCCCTATCCCCCTTATAATCATCAACCCTCTCTTTCTCGTTCCACTCCTAACTAAAATTTCATATCCTCTCTGAGTCAACTCATTGCCAAGAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06547.15	DUF1117	239	335	5.80E-34
PF14369.9	zinc_ribbon_9	11	42	8.50E-13
PF13639.9	zf-RING_2	174	216	1.20E-08
PF13923.9	zf-C3HC4_2	175	215	4.10E-07
PF12678.10	zf-rbx1	170	216	4.70E-07
PF17123.8	zf-RING_11	175	202	1.00E-05

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0016567	protein ubiquitination	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon
IPR010543	Domain of unknown function DUF1117

trEMBL

trEMBL term	Description
A0A1S2XBY1	_

SwissProt

SwissProt term	Description
RDUF2_ARATH	E3 ubiquitin-protein ligase RDUF2

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G59550	zinc finger (C3HC4-type RING finger) family protein
Medicago sativa L.	MsG0480021031.01.T01	_
Oryza sativa L.	LOC_Os05g01940.1	zinc finger, RING-type, putative, expressed
Cucumis sativus L.	Csa011682	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000474.1	_
Codonopsis lanceolata	Cl_chr03_41420T	_
Arachis hypogaea L.	AH08G11870.1	Uncharacterized protein like

Expression pattern