Gene detail

Detail information of Am01G040860.1 Annotation

Gene ID	Annotation
Am01G040860.1	Preprotein translocase Sec, Sec61-beta subunit protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G040860.1	mRNA	Chr01	214250843	214252066	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G040860.1
TCCCCAATGAAAGCCAAACTAATCTCTCGTGGTACCAAGACTTTTTTTTTTATAAGCAATGTTAGTGGGGGTGGAGGAATGTTAGTTTCCGGGAGTTGAATCCGGGAATCTTCGAATAGATTCAAATTCAAGACCACATGCTTAATTATTTTCCTATTTTGTTTTCTCTCATTTAATATATTGAACCATTTTCATAATTTGATATGATGTCCAATAAAATTATTTGGGAATTAACGAAAGTTGTTTAATTGTGGGGATGAACAGATGGGTTCAACCATGAAGCCAACGATATTTGACGAAAGAGTAGCAACAGCTCTAAGGAGTTGGCACCATGCCGCGAAGAAGCACGTAAAGCATAATCGTGGATCCACATTGCAAACCCTACTGTCAAGCAGGCCCACAACGCTGGCCCATCAAATGTCCCCGGCCCATATCCTCACATCTCCAACGCGACCCGAGTTTGAGGCCAAAGTCAATGATGCTTCTTCTAGTTCAAATTCAATTCACCACCAAGAAATGGAAATGGGTCACCTGGACCATTCTCGACAACAAGAAGTCGATGATTCTAGTTTTGTTTCTGCAATCTCGGACTTGACTCAACATGAGATTGATGTTGAGCATAGCAGCGAATTTTCCTTTCAGGGAATGGCAGCAGCAAATCATACATCATAGCAAATCATACATCACGACAAGTGTGCTCGTGATTATCGTATAGCAATCGTGTACATGTTGAGGGTTGATAATTTTGGATAAAGCAAGAATTGGATTTAATTTATTGTATAGGTTAACTTGCAGATGTTCTGCTTACTAGCAAATTAAGCCGACTTATTGTTTTAGTTACAAGTTTGTTGGTTCTTTTTATATGGAGAATCATAAAAGAAGAAACTCATTTGGATGATCCTTTCTTGAGCATGTGTTATGTTGTTGTTAACGTCGTGATCACAAGCACGTGCCTCTAAACAAGACAATCGGATAGTGTTTGCCCCAATAAATGTTATCTAGATGACACAATCAATTAACACACGGTTAGGTAGCTCTTCTAGACCTGCCTCAAAGTCTCGAGTTTAAATTTTGAACGTGACAAAAATTCTGTTGGGAGGAAAGGACTACATAGGCCGACCAAACTAAGTACTCGTGGCCAATCAGATTCCCCAACATAAATTAGTCATGAATAAAACCGGTGAATACTAAACACCAATAATACGGTAATAAAAAAACAATAACCATCAAAGAATATACAAAATCAGGCAAATATATGTTCATTAGTGGGAATTCTTTCTTTTGGTTTGGAATTCAATGCATTACCAGGTAAAAAGGTGTTTTCTATCCGTTAATTTGATTCCTAAAATTATAGACAAAAGACATATTTGATGATTTTTTTTATAAAATTTCTACACATCTAAAGATTATAAAGAGAACTCCTCCCTCATTTTGAAATTTTTATACTTTTATTTTTCATGTGTAGGGCTCTAGGACCACCTACTCACCCACCCACCACAAGTTGAAATTTAAGATAGGAACTTGATTTCAATTTTGAAGTCTCCACCTAGAAAGATAAACATGTCAAAATAAATATCATGATTTTATATTTACCTTGTAGGAGGAAAGATACCACTTCTATGTTGGACTTAACACATCACATGTTTTGCTTAAGGCTGTTCATTTAAACCAAAAAACTGAACTGAACTGCCAAACCGAACTGAACCGAACCAAAATTAACTGAACTTTTGCTAATAGTTTAGAACTGAACTGTTAAGACAGTTCGACCGAACTGAACCGAACTGTCTTAGCAGTTCGACGAACTGAACTGAACTGTCTTAATAGTTCGGTTCGGCAGTTCGAGCTCGAACCGAACTGTTTTAAATTTTAATTTTTTTTTTCGAATTCTTGAGCCCGAAAAAAAAAGTTCGAAAAAAAATTCAAAATTTAAACAGTTCGGTTCGAGCTCGAACTGCCGAACCGAACTATTAAGACAGTTCAGTTCGGTTCGTCGAACTGCTAAGACAGTTCGGTTCAGTTCGGTCGAACTGTCTTAACAGTTCGGTTCAGTTCGGTGCAGTTCACCTTTAAAACTGAACCATGAACAACCCTAGTTTTGCTTATAAAAAAAACTTGATATATATTTCACCGATCAAGATCAACTTGGATCGCGATCAGGGTTTATTAACACAATATTAAATAAAAAACAATTTATTTAATAATAAATCTATTAAATTTATATTTTTATTTTTTTAAAAGAATCTTCACACTGAAACGGCACAAAATATTAGTCCATTTAATTTTGGCTTAAATATCATTTACCCCCTGCAAATATCATGTTTAACTGTATCGAGTTACCCCTGCTGTTAGTTTTGGCTAACAGCGTTAATATTTGCAGGGGTAACTAGAAACACTTAATATTTGCAGGGGGTTAAGTAGATTCCAAATGTCAGCCAAGTCAGCCTAGAATTAACGTTGTTAGTCAAAACTAACAGCAGAGGGTAACTGGATACAATTACATTTTCCAGGGTTTGTTTGTTTTAAAAGTTTTTTTTTTCAGGGGGTAAATGGATAAACGTGATATTTGCGAGAGTTAAATGATATTTAAGCCTTTAAATTTTTAATATATTTTTTGATTTAGGACTGGCTACCCACGGAGTGTCCCAACGCTTTCAACGAAGGACTAATCTCCACTCGCTACTTGCGGTAAGGATTTCGCTGGCCAACACGCCATTTTAACGTGGGCGGAAATCGAACCCGGAAGCAAACCGGATTGACCCCCACTACGTAGCTCAGGGTAGAATTTTTTGATATATGTTCGTCACTTTTGTAACTTTTTTGTAAAATTTCTATATAGATAAGTACAAAATCATAAATAACCCAAATAATTATACTTATTATGACGACACCATTCTAATTTGTATATTTGTAACCCTTGTTGTGGTTTCTCTCCACCTACTTCCTCTTCATTTCCATTCACCAAAAATATTATTTCTGCATTTTCCACAACTACCCCGCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03911.19	Sec61_beta	54	94	2.70E-19

Gene family

Gene family	Subfamily
Transporter family	IISP

Gene Ontology

GO term	Description	Category
GO:0031204	post-translational protein targeting to membrane, translocation	Biological Process
GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	Biological Process
GO:0005794	Golgi apparatus	Cellular Component
GO:0009536	plastid	Cellular Component

InterPro

InterPro term	Description
IPR030671	Protein transport Sec61-beta/Sbh
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh

trEMBL

trEMBL term	Description
A0A1S2XEQ0	_

SwissProt

SwissProt term	Description
SC61B_ARATH	Protein transport protein Sec61 subunit beta

KEGG

KO	Description	Enzyme
K09481	protein transport protein SEC61 subunit beta

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G60460	Preprotein translocase Sec, Sec61-beta subunit protein
Medicago sativa L.	MsG0180004550.01.T01	_
Oryza sativa L.	LOC_Os11g01300.1	protein transport protein Sec61 subunit beta, putative, expressed
Cucumis sativus L.	Csa020082	_
Glycyrrhiza uralensis Fisch.	Glyur000066s00006251.2	_
Codonopsis lanceolata	Cl_chr06_23380T	_
Arachis hypogaea L.	AH08G13700.1	Protein transport protein Sec61 subunit beta like

Expression pattern