Gene detail

Detail information of Am01G040640.1 Annotation

Gene ID	Annotation
Am01G040640.1	dsRNA-binding protein 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G040640.1	mRNA	Chr01	213731606	213736531	-

Sequences

CDS:

>Am01G040640.1
ATGTATAAGAACCAGCTTCAAGAGCTGGCGCAGCGGAGCTGCTTCAATCTTCCATCCTACACTTGCATTCGGGAAGGTCCTGATCACGCGCCGAGGTTTAAGGCTACCGTTAACTTTAACGGCGAGATCTTTGAGAGTCCTCAGTACTGCTCCACTCTCCGTCAGGCTGAGCACTCCGCCGCTGAAGTTGCTCTCAATTCACTCTCTCACCGTGGCCCCTCACACTCCCTCGCCGCTAAAATCCTCGATGAGACTGGAGTATACAAGAACCTCTTACAGGAAATTGCACAAAGAGTAGGGGCTCCGTTGCCTCAGTACACAACCTACAGGTCAGGCCTAGGACATTTACCTGTTTTTACTGGGATTGTAGAATTGGCGGGAATCACATTTACTGGTGAACCTGCCAAGAACAAGAAACAAGCTGAGAAAAATGCAGCAATGGCAGCATGGTCGTCTTTAAAACAATTGGCGAAAGAGACTGCTAGCTCCTCAACTGAGCAGGAGAACAGCGATGAATTAGAACAGATCACTATAGCACGGGCTTTACTGAACTACCGTCTAAAGGAAAAGATGGCAATGTCTAATCCGAATGCTCCAATTCCATTTCAGAGGAAGTTTCAGATTCAAAATCCCAAGCCAACCAGTTCTCAACCTCCGGCCACCACATCAAAGATCCTACCTCTAATTTGCCAAAAGACAGCTCCTAGAAGCAAGCCTTCATTGGTAACAACAAATGAAAATCCTCGAAGTAGGCATCTGCCAGCTGCAGCATCCAGTGACAATTCTGTGGTGCCACCAGTGTCTTCTGCACCAGAAATCCGGTGGACCCGTCCTCTGAGGTTCCCTGCAGTAGGAGCAGCGCCTTATGTTCCCATCCGACAAATGAGACCACATTGCCATGGAATTGCACCTGCAGTGACTGTAAGAACTGTAGTACCCGTGTTCTCTGCACGACCCGCCTCAGTCCATAATGTAATACAGGCTCCTCCTGTCCGAATTGCTCCTCCTGTCAGTATTCGACAAGCTGTTCCTGTATATGCTGCTCCACCACCAAGAAAAGATGAACTTGCTCCCGGCCAAAAAGAAGATCTACCTCCACCACCAAGAAAAGATGAACCTGCTCCCGGCCAAAAGGAAGATCTACCTACCAGCAGTACCCCAGTCCAGCAAGATAAGCTGCCAGCTGAAGTTCAAGAAATGGACAAGGCTGAGAACAACACACCAGAATCAGAGACTGTGCCGAGCTTGGGGCAACTGAAAATTTAA

Protein:

Promoter(3k):

>AM01G040640.1
TATTGTGTTAGGGGCATTTTTTTGTGTTTATACGATTTGGTGGAGAAGAAGAAGCAGGGAAGGGGTTAGGGTTTTTGTGAAGTAGAAGGGAAAGCTGAAGCCCAATTTATAATAGGTGTGGGGAAACATGAGTCGTTTATTAGTGTTGGCAAGATCTTGACCGTTTATTTGTGTCGGCAAGATCTTGACCGTTTATTAGTGTCGGCAAGATCCTGACTGTTTATTAGTGTCGGCAAGATCCTGACCGTTGAAACTGCACGTTGCACTATTCACTATTCAATATTCACGCCTGCACGCTGCACTATTCACTATTCATGCTGCACTATGCACTATTCACTATTCACCCTGCACGGTGCAATCTGGGCCATTGAAAGATGTCGGCAAGATCTGAGCCATCCATTTTTTTCCATTGGAAACACCCCACCATCTATAAATAGGGAGTCTTAGTCTTGTAACTCACCACACCAACACCCCCAATCCTCTTCTGACTCTCTTGCCCCCCTTGCACACAATGGCTCCAGTTTTTATCACAGTTTTTTACAACGGTGTCTTTGAAAACACAAACACAGAGGGTGTTGTTTTTAGGTGCGATAACACATGCCTTCTCAAACTAAAGTCTAGATTCACATTAGATCAACTTAGACAAGCCATTGAGTGAAAAATCTCCCCTGACCATTCAAAAGTGGTTTCTAGTCTTATCTACCGTTACCCCACAACTCTCACAACTGATCACAAATTTTACGGCGATTTGCATCTAACTTCTAATGATGATGTCGATCTTATGTTAGAACAATTCAAGACATGAAACACTTAGGTCTATCTACACCAGAAGTATATGTAGATTTGGTTGATGCTCCTTCAAACTACACACAAACCCAGCCAACTCAGACGATTCTATCCTCTTCACAATTCACCATACCTTATTCTCAACAAACAGAAACCCCATACCCTGACTTCACTCCATCTACTTACCATCAATTCAATCCTTCATCATCCCAGAGTCATATGCCTTATGAAGAACCGGCTCAAACACTTCACCATGAATCCATTCCATTAGCCTCACAAAACCCTTTTGACCTAAACACCACCCCACCTATTAGTATACTTCATGGTGTGCATAACAAAGAAGTTGGCGACTTTAGCGAAAATGAGGATGATATTCTTCAGCGTGAAGACAGGAACCAATTGTAGCAACCCCCCACAATACCGTTGCATTCCATGAGCCTGTCCCACATTTTGTAAACATCACAACTGACAACACGGAAGCTGATGATGTTGAGTATGACCATACCATGGACAGAAACCGTGAGTTAGCCGATGAAGACCCCAACCAACTCCAGAAGTGAATGAAATTTGCCACCAAAGAATTAGCCCAACACTTCATCTAGACATATCACCTCCACAAATCACTCGATTTTAGAGTCGATGCATCTAATACAACTAGATGGATTGTTTGTTGTGTGCACGAAAACTGTTTGTGGAGGTGTGTCGTCAGACTCGGTAAAAGGTCTGACATATGGGAGATTACACAGTTGGAAGAGCCACATACATGTACTACAGGGACTCTTTCTCAAGATCACCGCCAGCTGACCGCGGCTCTCATGTGTGACAACATGCTTCAACTGGTAAAGTCGGATCCGACAATATCTGTGTCCATGTTGATAGAACACATAAGGGTGAGGTACACGTACCAAAGTTCCTACTGAAAGGCTTGGATTGGGAGGAGTCTTACAATCAAGTTACAAAGTGGCTCCGTGCTTTTTCTCACTACATTCCAAACAGTGTGTACGACCGGGAGTACAAACCATTCTATGAGAATGGCCAAGAAGTTGATGGCAAGGGTGTCTTCCACCGCATCTTCTGGAGTTTTGGGCCGTGCATCAAAGGCTTCAATTTTTGCAAGCCAATTGTCTCTGTCGATAGAACATGATTGTACGGTAGGTACAAAGATGTCTTCTGTTGGCAATTGCATAAGATGGAAGTAGCAACTGCTTCCCAATAGCATATGCAGTTGTGGAGGGTGAGACAGCTGATGCTTGGTACTTCTTTCTATCCCGCTTAAGAGCGTGGGTGACACCCCAGGAAGGTCTCTGTTTGATATCGGATAGACACGAGTCTATCAAAAGTGCTGTTAGGTGGGTAGACAGCAATTGGAAGCACGTGCTTTGTATTCGCCACATAGCACAGAACTTCATGAGACACTTCAAGAACACTTCTGCCAGGAAAATTGTGGTCAATATGGGTGAGTATTATTTTTTTATAAAAAAAACCCTAATATTTTTTCATAACTTCTTTACCAACATTATATTTTTTTCATAACTTCTTTACCAACATTATATTAATTATCAATATGGATGAATTTTGGATGTATGCTATTTTGGTAAATAATCTAAAAAAGATGCTATTTTGGTAAATAAATTTTTTTTGGGCTATAGTGGTTTTTTTTGCCATTAAACTACTCCGATCAATGAGATTAAAAAAGTGATAAATGAACGTTACCGTAAAGAAAGAAGAAAGAGTGGGAAGTAAATACCGGGTTGAATGATCAGTTCCATAAAGTATATAGTAGGAAATATAGGAAAAGATCACATCCATGCAGTGCTGCACCTGCAGCCTAACGTTAAGTTGACTCCCAACAACAACGCATTAAATAACCTCCTATTATTTTTATATTATAAATAAATACAAAATTTTAAATATTAATATTCCCAGAAAGTAATCACTAGTTTTCTTTTCTGTTCTGTTCTGTTCTCTCTACTCTTCATTTCTAGTAGTACTTTACTTCCGTTCATTTCTTCTTCTTCTCCTTTCACTTTCTCGCTCCTCCACTTTCTCTCTCTAACCTTCTTCGCGAACCCTAAAACTAGTTCATCTAACTGGTAACAGTTTTCCGGCAGCACCGGTTCCGGGTCCGACTGGAGAATAATCAGGCGACCCGACCTCTTTTCTGGTCACCGATTATTTACCGGAACCAAGTGAGCGTGACAGAGAGATCGGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00035.29	dsrm	2	68	1.20E-30
PF00035.29	dsrm	88	153	1.20E-30

Gene family

Gene family	Subfamily
Epigenetic Regulators	DRB2

Gene Ontology

GO term	Description	Category
GO:0003725	double-stranded RNA binding	Molecular Function
GO:0035196	miRNA processing	Biological Process
GO:0005737	cytoplasm	Cellular Component

InterPro

InterPro term	Description
IPR014720	Double-stranded RNA-binding domain
IPR044451	AtDRB-like, second double-stranded RNA binding domain, plant
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant

trEMBL

trEMBL term	Description
A0A1S2XCA9	_

SwissProt

SwissProt term	Description
DRB2_ARATH	Double-stranded RNA-binding protein 2

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G28380	dsRNA-binding protein 2
Medicago sativa L.	MsG0280010912.01.T01	_
Oryza sativa L.	LOC_Os10g33970.1	double-stranded RNA binding motif containing protein, expressed
Cucumis sativus L.	Csa006995	_
Glycyrrhiza uralensis Fisch.	Glyur000066s00006215.1	_
Codonopsis lanceolata	Cl_chr06_22730T	_
Arachis hypogaea L.	AH18G04530.1	Double-stranded RNA-binding protein 2 like

Expression pattern