Gene detail

Detail information of Am01G040540.1 Annotation

Gene ID	Annotation
Am01G040540.1	cyclic nucleotide-gated channel 15

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G040540.1	mRNA	Chr01	213484582	213487772	+

Sequences

CDS:

>Am01G040540.1
ATGATGTTTGAAGATGATCCTGAAGTAGCGAAAATTCCGACAACTAAGGTTAAATACCACATTGATGGAAGACAAATACCTGAACCTAGTACTTCCAAAATGTCCCAAAAGAAGGTTTCAAGAAAGAAGTTTCTGAAAGGTAGAGTATTATCAAGAGTATTTTCAGAAGACTATGAAAGAGTAAAAAGAAGAGTATTAGATCCAAGGGGACAAACTATACATCGTTGGAACAAGATATTCTTAATAGCATGTTTAGTGTCTTTGTTTGTGGATCCTCTGTTCTTTTATTTGCCTGTAGCTAAAGAACAAGTGTGCATTGATATTGGAACAACTCTTGAAGTGATTCTCAGTATGGTTAGATCAATTGGTGATGTCTTTTACATGATTCAGATTTTAATGAAGTTTCGTACTGCTTATGTTGCTCCTTCTTCTCAAGTTTTTGGGAGAGGAGAACTTGTTTTAGGATATTCTAAAATTGCTGTTAGGTACCTTCAAAAAGGTTTTTGGTTGGATTTTATTGCTGCTTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTTATTCCTACTCTTAGGGGTTCAACTATGGCAAACACAAAAAATGTGCTTCGTTTTTTCATTATTTTTCAATATCTTCCGAGGTTGTTTTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACTGGGGTTGTCACAGAAACAGCTTGGGCAGGTGCTGCTTACAATCTTATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATTGAACGTCAAGAAGCATGTTGGAGAAGTGTATGCAATATGGAGAAATCATATTGTGAATATGGATTCTTTGATTGTGACAGGGTTAAAGATTCCCCCAGAGTCTCCTGGTTTATGGCTAGTAACATCACAAATTTGTGTTCACCAAATGCTGCCTTTTATCCTTTTGGTATATACGCTGATGCCATGACTTCTCAAGTTACATCCTCACCGTTCTTTAATAAGTACTTTTATTGTCTATGGTGGGGCTTAAGGAATCTCAGTTCATTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTTGCCATTGTTGTTGCTACCCTTGGATTGGTTCTTTTTGCCTTGCTGATTGGTAATATGCAGACGTACCTCCAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACAGACACAGAGCAATGGATGCATCACAGACAACTACCTCCAGAACTAAGAGAGTCTGTGCGTAAATATAATCAATACAAATGGGTGGCTACACGAGGAGTAGATGAAGAAGATCTTCTCAAAGGACTTCCTGTTGATCTTAGAAGAGAAATCAAACGCCATCTTTGTCTCCAACTAGTTAGAGGAGTTCCCTTGTTTGATCAAATGGATGAGAGGATGTTAGATGCAATATGTGAAAGATTAAAGCCTGCATTGTGCACTGAAGGAACCTACTTAGTTCGCGAGGGTGATCCTGTGAATGAGATGATGTTCATAATTCGTGGCCATCTTGATTCTTACACCACAAATGGAGGCCGCGCTGGATTCTTCAACTCTTGCCCAATCGGTCCAGGTGATTTTTGTGGCGAAGAACTATTGACATGGGCGTTGGACCCACGACCAAGTGTGATTCTTCCTTCTTCCACAAGAACCGTTAAAGCCGTCTCAGAAGTTGAGGCATTTGCACTCATAGCAGAAGATCTTAAATTTGTTGCATCTCAATTTAGAAGGTTGCATAGTAAACAACTTAGGCATAAGTTCAAGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCATAAGAAAAGGAAGGAAGCTGCTGAACTTAGGGATAGGGAGAATACTTTAGCAGCTTCTGAGTCTGAAACACCGGTTTCATCATCTGGTTCAGGTTTTGTTGTGTATGGAACAAGGGTGGCCAAGAGCAATAAGAAGAAAGGTCTCAATATCTCTTCTGGGACTCCTTCTGGGGTAGTAAGCTCTTTGCAAAAGCCAGCTGAACCAGACTTTTCTTGTCAATGA

Protein:

Promoter(3k):

>AM01G040540.1
TTATAGTCGATTCGAGCTTTCATCAGTCAAAATTATGTTCCAAAGCTCGATAAAATCAAAGACTGTGGTCTCCTCAACTCATTTGGCCTATAACCATGTGTAGAATATGTTGGCTTTGTTGTTAGGATTAGATGTTTGGTTTGATGTAATTTTACTTTAGCCTAAATTTCTATGTAATGATGCCATGAATTTGGATGTTAAGTCTATTAGGACTCCCAATGCGATTAGGGAATGCCCTAGCACTTGCTGCTTTTCTAAGCCGTAATGTAACTATTTTTATCCAATGAATTTCCTTTGTTGTTTCAAAAAAAGTAATTGTCAATCATAATATTTCTTAAGATTAGGATTAAATTGGATAATATCTCTTTTGAAAAAAAAAAAAGATATTATCCTATTTCTTAGGATTAATATTTCTTTTGGTAAAAAAAGAGGAATAAGTAATTGACAATATAATATTCCTTAATATTAGGTTTAATATTTCTTAGTAATTGGTAAAAACAGCTTATATTCCAACAAAAATTAACTGGTATTAACTGGTTCCCAAAAATTGAAACATGTAAAACTCAAAACAAATGGTATTAACTGGTTCCCAAAAATTATCCGTAGATGCTAGTAGGTGCTCTTCATAAAAATGAAAAGCCGCATCTTCTTTGAGGGCGAAGTCAGCATTACTTGTATGGTCTGCCACTTGAACATGAGCGACAAACCTATAAATATACACACATCATGAAAATCTTTATAGTGTGAAAACAATGAGTAAAAAAAATTTAGAGGATTAAGAAAACTTAAAAAAGTATTCTCATGGATTCGAAATATATTACACCGTGGTTGAAATGATGTCAGCTATATGGGCCAGCACAACATAAAAGGATTGTTGTAAAATCCAAGTCAGTTACGTGAAACAATTTAAACACAAAGCAAATATTCAAGAAATTTTGGTTGAGATATAAGGTTTAAAAAAACTACATGGGGGAAGAGGAAGATGGTGTAGGAATTGGATGTTAATATTGTTGTTATGTAGGTGAAAATCTTCATAGCTTAAAACAGAAACTTCCATTGGAGAATGGTTACAAGATTTCCGGTTTTTTGGTTTGTTGATGTTTGAATGCAGAAAGATATTTTTTCGGTTAAGCAATTTGTAATGATAAAAGGATGTTTTGAGATGATTCCTTGATACGATTAGTAGATCTGAAGCCCATGAATTTCGGCCTAATAGTGAAGCCCATGATTATTTCGGCGCATGAATCACTTTAAAACGGCCAGTTGCTCCTTCCCTTTTAATTCGGCCCAGTAATTTTGTTCCCTAACGACGAGAGCTACATTAATACTATATGATTGGTAATTACCCAACGATGTCTTATTTATTATAAATGAACATGTTGTTTGAGCCGCGACAAGAAAATACTAGATATTAACGAAAAATATAGAACGGGAAAATTTCGCATGTATTTAGTAACGATAAAAAATGTCAAATAAAGAAAATATTCTAAAGTTATGAAATTTTATTTCTTAACAACTTGAAAAAGTTATTGTAATTGAATTCGGTCTAAATTTATCTATACAAAGAATATGATATTACTCAATGTTTTGAAAACCGAACCGGACATTGAACCGGTGATACCTCCGGGTCATGGTTCAACCGCTTAAAACCGTTCAAAATCGGATGAAACCGATGAAATAACCAAATCGTATAAGGTGTCGGGTCATGGTTTAACCGGATCAACCGTTCCGATTGATTCGATTTTTAAAATATTGATATTACCTGCACGCACGGGTATACTTCTAGTATATTATAAACTAATGAGATATGTTTATCCACAACAAGATTTGAATTTGTTTTTATAAAACAAGAGCTGAGTTCTTACTAGTTGGTAGTGTTATCTTTTCTTTTGGTTGAGAGGGTCTTTCACATCGTGTTGATGTCTAGAGAAAGGGAGTCTGACTCATTCAAAGCTAGACTGGATATAATTAAAATCGTACTTCAAGTTCTATCGTAAATAATTCACTAAATTACATTTTTATTCATTTATCTTTCACTTTTGTGTTAATTTGGTCGTTTATCTTTTTCTCACTTTGATCATTTATCTTTCATATTTGTGTCAAAGTGGTCATTTATGTTTGATATGTTTCAGTTTGATCATTCAATTGGTATGATATGTTTCAGTTTGGTCCTCTTGTGTTTTTTTTTAAGGACCAAATAGAAACATATCATACCAATTGAAGGACCAAACTGAAAAATATCAAAGATAAATGACCAAATTGACACAAATATGAAAGATAAAAGACCAAAGTGGAGAAAAACGATAAATGATCAAAGTGACACAAATGTCAAAGATAAAGAACCAAAAATGCAATTTAGGCTAAATAATCAAACTCATACTAGTCAAAGTTATCCATTTTGAAGGTGTGCACCAACTACACTTGAGTTGCTAGCTCGGTGGTAAAAGCTTAGCTTTGTATCCTCAAAGTACTGAATTCAAATTCCCTCGGAAACAATTGAAAAATGACCATTAATGCCACTATAATTAATAAAAATTTTCCCTTCCCAATAAAAAAAAGGTGTGCACTAACCACCACACTCATTGCCTATTTTTTTTTTTACATATATTAGCTGTTCCATCTTTTTTTTTTGATGAAATAGCTGTTCCATCTTTAGTCTTCCCTTTGTCAAAAAAAAAATATATCTTTAGTCTTCCTTATATTTTGCTACTTCCATATATTTGGATTATTTACAAATCCGTTTTCTTTCTCTTTTTGTTTTATGAATCTTGTTTGATAGTCTTCAGTCAATAATAAAATCTCATTTGATACGATCCCCCCATTTATAAGAAGAAAGTGACACCTACAAGGAAAACGAATATAATCTTCTTGATTCCTCTCTCAATCACCAATTCATTCTACATTGCCACAATGACCCTACTTCAGTTTTTCAATCCTCGTAGCGGTTTCTAGTTCGTCGGCGACAGAACAATAAAAAGGGTAGAGGATATATAAGTTAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	76	395	3.40E-30
PF00027.32	cNMP_binding	491	578	2.10E-06

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0030553	cGMP binding	Molecular Function
GO:0051592	response to calcium ion	Biological Process
GO:0005516	calmodulin binding	Molecular Function
GO:0009617	response to bacterium	Biological Process
GO:0044325	transmembrane transporter binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR003938	Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR000048	IQ motif, EF-hand binding site
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A396JFQ3	_

SwissProt

SwissProt term	Description
CN15C_MEDTR	Protein CNGC15c

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G28260	cyclic nucleotide-gated channel 15
Medicago sativa L.	MsG0180003547.01.T01	_
Oryza sativa L.	LOC_Os02g41710.1	cyclic nucleotide-gated ion channel, putative, expressed
Cucumis sativus L.	Csa015172	_
Glycyrrhiza uralensis Fisch.	Glyur000448s00026709.1	_
Codonopsis lanceolata	Cl_chr06_22580T	_
Arachis hypogaea L.	AH18G04640.1	Uncharacterized protein like

Expression pattern