| Gene ID | Annotation |
|---|---|
| Am01G039860.1 | DNA/RNA helicase protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G039860.1 | mRNA | Chr01 | 211212917 | 211224471 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00176.26 | SNF2-rel_dom | 325 | 716 | 9.40E-85 |
| PF00271.34 | Helicase_C | 843 | 954 | 5.20E-17 |
| PF08797.14 | HIRAN | 101 | 204 | 2.60E-14 |
| PF13920.9 | zf-C3HC4_3 | 769 | 817 | 2.10E-10 |
| PF00097.28 | zf-C3HC4 | 772 | 811 | 1.70E-09 |
| PF13923.9 | zf-C3HC4_2 | 771 | 811 | 4.30E-09 |
| PF13639.9 | zf-RING_2 | 771 | 812 | 1.00E-08 |
| PF13445.9 | zf-RING_UBOX | 772 | 809 | 1.50E-08 |
| PF14447.9 | Prok-RING_4 | 772 | 819 | 5.60E-08 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | Others |
| Ubiquitin Family | RING |
| Epigenetic Regulators | CHR29 |
| Transcription Factors Family | SNF2 |
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | Molecular Function |
| GO:0016746 | acyltransferase activity | Molecular Function |
| GO:0140096 | catalytic activity, acting on a protein | Molecular Function |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | Molecular Function |
| GO:0016301 | kinase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014905 | HIRAN domain |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XD96 | _ |
| SwissProt term | Description |
|---|---|
| SM3L2_ARATH | DNA repair protein RAD5A |
| KO | Description | Enzyme |
|---|---|---|
| K15505 | DNA repair protein RAD5 | [EC: 5.6.2.-] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G22750 | DNA/RNA helicase protein |
| Medicago sativa L. | MsG0280010470.01.T01 | _ |
| Oryza sativa L. | LOC_Os08g08220.3 | EDA16, putative, expressed |
| Cucumis sativus L. | Csa006971 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000193s00013989.1 | _ |
| Codonopsis lanceolata | Cl_chr08_09610T | _ |
| Arachis hypogaea L. | AH18G05310.1 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 like |