Gene detail

Detail information of Am01G039560.1 Annotation

Gene ID	Annotation
Am01G039560.1	AAA-type ATPase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G039560.1	mRNA	Chr01	209954620	209958906	+

Sequences

CDS:

>Am01G039560.1
ATGTACAGCAATTTCAAGGAACAAGCCATAGAGTACGTAAAGCAAGCCGTTGCGGAAGACAATGCTGGAAACTACGCGAAAGCGTTTCCTCTTTACAAGAACGCTTTGGTGTACTTCGAGACTCATTTGAAGTACGAGAAGAACCCTAAGATTAGAGAAGCCATCACACAGAAACTCTCTGAGTATCTACGCCGGGCTGAGGAGATCGGAGCAGTCCTTGACGCAGGTGGGCCTGGCCCGGCTTCCAATGGGGATGCTGCGGTGGCTACAAGGCCCAAGACAAAGCCCAAGGATGGGGAGGGCGGTGGAGACGGGGAGGATCCTGAGCAGGCGAAGCTCAGAGCTGGGCTTAATTCGGCGATCATAAGGGAAAAGCCTAATGTGAAGTGGAACGACGTTGCAGGGTTGGAGAGTGCAAAGCAGTCTCTGCAGGAGGCTGTGATATTGCCTGTGAAGTTTCCTCAATTCTTTACTGGCAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACAGGGAAATCATATTTAGCCAAAGCAGTCGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCCCCCTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGTCAGCGTGGGGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACGGAACTTCTGGTGCAGATGCAGGGTGTAGGGCACAATGACCAGAAAGTTCTTGTTCTTGCCGCAACAAATACACCCTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATTTAGGAGATACTCCCCATAACTTGACTGAAAGCGATTTTGAATACTTGGCTAGCAGGACAGAAGGGTTTTCTGGTTCGGATATATCTGTTTGTGTAAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGCTGATCCCATGCGGACCAAAGCAACAGGGTGCAGTACAAACTACAATGCAAGAGCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTTCCACCCCCTATTACGAGAACAGATTTTGAAAAGGTATTGGCTAGACAAAAGCCTACAGTTAGCAAATCTGATCTTGAGGTTCATGAGAGATTCACTAAGGAGTTCGGGGAAGAAGGTTAA

Protein:

Promoter(3k):

>AM01G039560.1
TCGTCGCGTTTGATTGTTTTGAATGTTGTCACGGCTCCTTGATCGTCTTCTTGACGAGGTCGAGCCTTCCAGATCGTCAAATTGGCGTGCCAAAGGAGAACGGGAACCATTCCCTCGGTGGCGGCGAGGAGGAGAATGAGGATCATCAAGATCGTCATATTGTCGAGCTGATGGAGAACGATAATCATTTCCTTGGTGAGGGTATGGGGAAAGGTGAAGATCGTTGGGACTATCATGTTGTCGAGCCAGAGGAGAACGGGAACCATTTCCTCGTTGACGGCGTGCGGGGGAACGGTGATTGAGCTTTCTCCGAGGGGGTGATCGATGGAAAAGTCTTCTTTGAGCTGGGCGTCGTTCCTCCAGGGAGTTACGCCCGGGTGATTGCTGGTCCAGAAAGTTTCGACCTTGCAGTCTCGCTACTTCGGATTCGAGGTTAGCGAAGCGGTTGTTTCTTTCTTCATTTACCGCTTCTTGCCGAGCCAGTAGCTGAACGAGCTGTTGGACCGCGCCAGTCAAGGCCGGAAGTAATTGAGGAGGAGATGGTAGGCTCGTTTCATCTGCGCCCGAACGTGCTCGGGATGGTCCTGTGTTGGGAAATCGGCTTCGTGTTTGCGACGAATTCGTGAGTTCCTGGACGTGGCCTTCAGGGTTTTGCTGAGGGCCGAGCTCAGGTTCGGCCATGAGACTAGTCGGTGTTGAACGGCGCGTTGGTGCCATTTCACTAAGTTTCAAGGAGATGGTGAGAAAAAATAGGGTATTGATCTCTCCCACTGTGGTCGCCAATGTTCTGTACTGTGCTTCCGATCTTAGAGATCGGTATTACGCAGTTAGTAGATATTTTGTCCTTGATTCTGTCTCTGTCTTCAGGCTTGAGGGGAAGATTTCGTTCGACTTGGAGAGGTTCGATCTTGAGAGGCGATGTTGAGATGTTCGATCCTGAGACGTCCGATCTTAAGGGGCGAGGTTGTACCTGCAATGATACTCCGATGCTTAAGTCAGTATTTGAGTGAATAAGTGTTTGTTAGAAAAATGCTTACCATTAATGAGCATTGAATGGGGTATTTATAGAGTTTGAATGTGTTTGTGTTGGCGTTTTTGGGCCGCCCGATCTTGCGGGCTGATCTTGGCCATTGAAGATTGGACTCCCTCAATATGATTGAGCTTCTCATCAATTGGGCTTTTGGAGAGGGGGGTGGAAATAGAAAAACAGTATAATTACCATAACAAATGGCAAATGGGTAAATTGGGGGTGGAGGGTTAAAACAACTTAAATGATGTTTTTGGCATTCTAATGAATTTACTACTCTAACACAATGATTTCCAATATCACTGATGCATCCCAGACACAATAAATCATTCAATAATTCATGTCCCTAATAAATTAAGTCAACTAAGCATTTAAGAATTAATCTACTAAACCCACAAAGTAAACAACAACAACAAAATAAATAAACCTAAGCCTCTTAGACATCAAAGTAATTATAAATTACTTTGGGTGTTACATGAGGACACTCTTTCTTCTTCCTCCCCCCATTTTCTCCCCATTTATTTTTTCTGTTTTTCTCTCAATTCCTCTCTTGACTTCTCTCTAATTGTTTCCTACTTTCCTTCTTGTTTTTTATCCCAATCTATTTGAGTTCTTTTCTGTTGACTTCTCCTTCTACACCAATACTGGAATTTCTCCCCATAATGAGAAAGCATCAACAAGCAACGAGGGGTCCTTCCATTCTCGGTTTTTCTGGGTTTGTGATTTGAATTTTTTTTTCTAAAGATATAAGAGAAGATGCGTTGCAGAATTGGGGTTTTGGGTTAAATGAGTTAGTGTATGAGAGGATTCTGGGCAAGATAAAGAGAGGAGTTATATGTTAGTTGGTGAAGATGAACCGAAGAGGGGGAAGATGGAGAAGAAGAAGATGGATTGGGAATTTAGGATTTTTAATTTATTGTAACATATGATTTAATATGTGACATGCCAAATCAACTTTAAAATATTAGAAATGAAAAAAATTACACATCAAAACTCTTTTTGCAACATCAGCAGATGGCTAACAGAGTGTTAACATAAGAGTACTTTTTTTTAAAAAAAATATTATTTTGTAAGGACTTTTAATTTTTTTTTTGCAATGACTTATTTGGAAAATTGCTATATTTACAGGGACGAAAAACATATTTAAGCCAATAAAATTCCAACAAGGGAGAAATTTATATACAAGGTGACCCATTGTAGCCCCTTAAAAAATCATATATATGGAAATAAAAGGCAACTCATTGAGCAATGAATTTTATTTATATATACAATAGGTGTTATATTATCTGTCAATTAAAATTTGACACGTAATTAAAAAAAATTAATTAATTTTTTAGATAAGAAAAAAAAAAGTTAATTAATTGATAATCATATTATATTCAACTATTTCATGAATTATGCGGTTATAAAAGACCGTACTACATTAATTAAACAAATGTTGAGCAATTGGCCTATTATATCTAAGGACGGAAAATTAAGACAAACTTGATTTAAAAGCTTTTATTTGGAAATGGATTGTCTACCTTTATGGCGGGAAAAGGCACCTACCTTTAGGTGATTTTAGGCATAAAAGAGGAAAGAGAATATAAAAAAATATGGAGGGAAAATAGGAGAGAGAAAATGAGAGATGAGAGAGATAGAGACAAAGGTAGGTGCCTTTTCCCGCCATAAAGGTAGACAATCCGTACCCCTTTTATTTGAGAGGCTTTCTTTATTTGAGAGGCTTTGTTATTCTCCCCCTTTCTCTCTCGTGTTTCCGATCAGATCCTCACCATCCACCTTCCAATTCACACAGTTAGGGTTTTCGAAATCGACCACAGCTAGCTTTTCCTCTCTTTTCCTAATACATCAATCGTGATCACGTTGCAGTTCTAGGGTTTCTCCTTTCCTTCAGACACCAATCCTGAAAAATCTTTTGTTTGGAAATCCGATTCTCGCACATGCTATTAATTTGATCGTGATTCGTAAAGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00004.32	AAA	168	297	3.40E-44
PF09336.13	Vps4_C	367	431	4.20E-23
PF04212.21	MIT	7	69	1.30E-20

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0016197	endosomal transport	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0006508	proteolysis	Biological Process
GO:0004252	serine-type endopeptidase activity	Molecular Function

InterPro

InterPro term	Description
IPR015415	Vps4 oligomerisation, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR036181	MIT domain superfamily
IPR007330	MIT domain
IPR003959	ATPase, AAA-type, core
IPR003960	ATPase, AAA-type, conserved site
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A1S2XFI2	_

SwissProt

SwissProt term	Description
VPS4_ARATH	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

KEGG

KO	Description	Enzyme
K12196	vacuolar protein-sorting-associated protein 4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G27600	AAA-type ATPase family protein
Medicago sativa L.	MsG0480020554.01.T01	_
Oryza sativa L.	LOC_Os01g04814.1	vacuolar protein sorting-associating protein 4B, putative, expressed
Cucumis sativus L.	Csa019719	_
Glycyrrhiza uralensis Fisch.	Glyur000104s00005975.1	_
Codonopsis lanceolata	Cl_chr06_16490T	_
Arachis hypogaea L.	AH08G15450.1	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 like

Expression pattern