Gene detail

Detail information of Am01G038870.1 Annotation

Gene ID	Annotation
Am01G038870.1	RING-H2 group F2A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G038870.1	mRNA	Chr01	207898138	207902306	+

Sequences

CDS:

>Am01G038870.1
ATGGAGGTTCCTGTGATGGAAGAGAATGAAACTAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTTGAGGGTGGAATCCAAGATGCTTGTGATGATGCTTGTAGCATATGCCTCGAAGACTTCTGTGACAGTGATCCTTCCACGGTGACGAGTTGCAAGCACGAATTTCATCTTCAATGCGTTCTGGAATGGTGTCAGAGAAGCTCCCAATGCCCCATGTGTTGGCAATCTATCAGTCTCAAAGATCCAACGAGCCAGGAATTGCTTGAGGCAGTGGAAAGAGAGAGAAACCTTAGGCTCAATCCATCTAGAAATGCCGCAATATTTCATCATCCAACTCTAGGGAATTTCGAATTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATCATCCAACACTTGGCTGCTGCAGCAGCAATGGGGAGAGCACATCACATTGCTAGAAGGGAGGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACAATATTTAGTATTTTCAACTCATCCTAATTCACATCCCACGGCTCCTGCTTCTTCCTCTCCAACTCAGAGGGGGGATGGTGAACCAACTCCTGCTGTAGCTGTTGCCACTCTTTCTCCAACTCCTGCAATTGGAGAAGAATCACCACAGCTGACTTTAGTACCTCCTGTTCAAGCTGACGGGATTTCTGCTTCAGGATCCGGGTCTACTGCTCTTGCTACAGACAATCAGGGATTATCATATAACAATAGGAGGTCTCCTAATCAGTCTTCTCCAAGAAGTCAAGACAGAGCAGGGCCATCAGAATTTCAGTCATTTTCAGAATCTCTGAAATCTAAACTAAATGCTGTGTCAACAAGAACCAAAGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTTTCTCGGAATACCTCTATGTCTGATATTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCTTGGAGACCAGAGACAATAATAGAAGCAATAGCAGTTCTGCTCCGAGTAATTTAGAGGATGATTCAATTCAGGGATCAAATGATCAGCATTTTACAGGCACTGAAAGGGACAATCTTTTGAGAGACAATAACACAAAAGCATCTTGTGCCGCTGGTTCTAGTTCAAATTAA

Protein:

Promoter(3k):

>AM01G038870.1
AACCACAGAGCATACTAAGAAATTAATGCCCCACCGAACCTAAAGCTCTGATACCACTTGTTGGGAAAAAACAACATAGAGAAATAAAATGAGCACAATCGGAGCACAATAATTTAACGTGGAAAATTCCAAACCGGAGAAAAACCAGGAACTGTTGCTTAATGACAACCAGAGAATAACACTATGTGAAAATTATTACAACACACAGACTTCTCTCACACACCCAATGTCCCCAATACACCCACACTCTCCAAAGAAAATATTTAACTACCCCTCACAACACTCTAAGACAAAAGTATAAGAGAAAGAAAGAAAATCAAATACCACTTAAAGTGTGTTTGATTGGTGCACTTGTAAAAGAAAACTTGAGCCATTTTATATAGTTTTGGTTTCCTTATTCCTTCACAAAACTAGGCAATGTGAGACTATTTCAAGATACCCAAATTGCAATCAACTCCAACACTAACGAGAAGGATTGAGAAGGAGAAGTGGATATTATAGCGGTAGAAGCTGAGAAAATGTTAGTGGAAGATTAGCAAAGCTAAAATGTGTTTTTTTTACACAAACCAAAGCTAGAAAAGGTTATTGGCTAAGAGACTAGTAGTATCATTTTATTCTTTGACGCATAATTACACCGCTGATTGCTTGGCAAAGAACAATTACAAGATAAGGGACAATTTTGTAATTTATGATTCTGGACCAGACTTTTTGGTCAATTTGCTTTCTTTAGACACTATTGGACTCGCTAGGCCATCTATGAGTAACTGATTTCGTTGGGCCTCTGGCCCTATTTTTCACAAAAAAAAGAAGGGTTTTGCTTTTCCCACACCCCCTCCTACTCTTTCACACCCCTTAACAAATTTTATTCCAAAAATAACCTCGCGTGAGACGCTGCGAGGACGTGTTTTATGACTGTTCGAACGACCTTGTTCGAACAGGTTCGCATGACCTCATGCGAACAGTTTAAAAACGCCCAAAAGGGTGTGAAGTCAAAATTTAACACACTCGAACGATGTCGTTCGAATGTGTTCGAACAAGGTCATGCGAACAGGTTCGCATGACCTCATGCGAACAGGTTCGCATGACCTCATGCGAACAGGTGAAAAACGCCCAAAAGGGTGTGAAGTCAAAATTTAACACACTCGAACGATGTCATTCGAACCTGTTCGAATGCCCGTGTTCGAACAGGTGAAAATTCGTGAAAAAAAAGAGGTTTGGCCTGGCCTTTTGGTCTTTTCACACCCTTATGGGGTGTGTTTCGAGTAGGAGGGGGTGTGGGAAAAACAATACCCAAAAAAGAACTATTCCGTGCGATAAGGACCCCAAGTTAAATCAAAATAACCAAATTAAATTAATTATTGATTGACTCTTTATAATCTACTATCAATGTAAGCAAACAACCACCGTCAAAAATACTAAATTATCCCCCACTTTTATCTGAAACCTAAGAATAAAAATGTTATTTCAAATTATTTTCTCTCAATTTTTTTCTCTCACTCACTTTTTATCATTAGTGGGTCCCACTCTCATATCATCTTTTAATTTTTTTAATTCACTTTAAAACCTATTTTTCTCTTTCCTCCCTCTCACTCTTTCCACTTACTATCAACATAATCAAATAATCCACTACCAATTTTTTTTAATTTAATTTTTGTAAAAAATCATTAATTAATTTAACCACTAGAATTTACTATTTTCTATAATCTACTAAACCCAATTAATTTAACCACTACCAATTGTCAAAAAAAGCGATACCGCTAGCAAAAATTCCAACATTATTTTTCCTAAAAAAATCAATATTAAATCTCATCCACTTTTTTTTGAGTCGCACGGGAGCAGCAACGACAGCTCCAACGGAAGCGCCAACAAGAGTGCCAACAGGAGCAACGAAAGCAGCAACGGGAACGCAAAAAAGCAGCAAAAGCTGTCTGTCGCACCGACGCTCGCAGTCAAATTTTTTTTTTTGAAAATTATTTTTTAATTTGTTTTTTCTAAAAAAACTGTAATTAAATAAACTTAATAAAATTAATATTAAATTATGTAGAGTTTATTATTTACTTGAATCTACTCAAAACTACTAAACCCAATTAATTTAACCACTACTGATTGTAAAAAATGTGATACCGCTAGCAAAAATTTCAAAATTATTTTTCCTAAAAAAATTAATAATTAAATCTCATCCACATTTTTTTTGAGCTGCCACAGGAGCGGCAACAACAACAGCAACAGAAGCGCCAATAGAAGCGCCAACGGGAGCAGCAACGAGAGCACCAACATGCGCACCAACGATAGCGCCATTATTATAAGAAGATATCGTCATTATTACATCTCATTTTATTTTTTCCTCAATTTTACTCTATTATTAATATTATAAGATGATACCGACTTTTTTTTAAAACTTTTTGCGACACAACTTTTTTAATAAATTTGAAATATCGCATTTTATAGAGTTTTTCCTTTTTATTTTATTACATTTTAAAACTTTTAACTTATTTATAATTTCATAACAAATTATAACAAATACTGTATCACCTGTGCGTATACACGGGTAAAATACTAATTTTTTTAGGATGTCTACATCGTGGGGGGGGAACACCGTCACGACTTGGGCTACGTGCTATGATGGATTGATGACCAAACTCAGAGGAGAAAGGCGCGTAAGGTGAAAGACTCGTCAAAGAGATTCCAGGAGAATGCCACGTGTCATAATCACAGTGAGTGGTGGACCAAGACCGAGCTAAAGCCAAAGATAAGTTTAGCTGACTCTGACTCCGTGGTTGGTTTCTTTCTTTCAAATAATCCAAAAAAGTAAAACTAAAAAAAAAAACTTAAACATAAAGAAAAAGGTTAACACCCAGTCGACACTCTCCATACCTTATACCTCACTGCACCGAGAAAAAGTCCCTTCTCTCTCTCTAATTTCCCTTCTTCAGTTCTCACCCACCCGCTAGGGTTTTCTTCAATCGCATCCCGATTTCCCAACGCCATCCGAAATTCTCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	35	76	5.60E-09
PF17123.8	zf-RING_11	36	63	7.60E-07
PF12678.10	zf-rbx1	31	76	8.80E-07
PF13923.9	zf-C3HC4_2	36	76	1.80E-06
PF00097.28	zf-C3HC4	36	76	5.30E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0005840	ribosome	Cellular Component
GO:0009561	megagametogenesis	Biological Process
GO:0051726	regulation of cell cycle	Biological Process
GO:0051603	proteolysis involved in protein catabolic process	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A1S2XD01	_

SwissProt

SwissProt term	Description
RHF2A_ARATH	E3 ubiquitin-protein ligase RHF2A

KEGG

KO	Description	Enzyme
K19043	E3 ubiquitin-protein ligase RHF	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G22000	RING-H2 group F2A
Medicago sativa L.	MsG0280010577.01.T01	_
Oryza sativa L.	LOC_Os11g36430.3	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa002503	_
Glycyrrhiza uralensis Fisch.	Glyur001271s00028152.1	_
Codonopsis lanceolata	Cl_chr06_12210T	_
Arachis hypogaea L.	AH08G16250.1	E3 ubiquitin-protein ligase RHF2A like

Expression pattern