Gene detail

Detail information of Am01G036990.1 Annotation

Gene ID	Annotation
Am01G036990.1	transducin family protein / WD-40 repeat family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G036990.1	mRNA	Chr01	201787456	201815271	-

Sequences

CDS:

>Am01G036990.1
ATGGGTATATTTGAACCTAACAGAGCTATCGGATGCATCACCACCGCCGTCCCTTTCTCTATTCAGAGACTCGGCACTGAGACTTTCGTCACTCTCAGTGTTGGAAAGGCTTTTCACATTTTTAACTGTGCAAAGCTCACTTTGGTTCTCGTTGGTCCTCAACTGCCGAAGAAGATTGGTGCTCTTGCTTCCTATAGAGATTACACTTTTGCTGCTTATGGAAACAACATTGGTGTTTTCAAGCGTGCACATCAGGTTGCAACATGGAGCAGCCATAGTGCCAAAGTTAAATTATTACTGTTGTTTGGAGAACATATTGCCAGTGTTGATGTCCAGGGTAACATGTTATTGTGGGCATTCAAGGGAATTGATCAGAACCTTGTTCCGTTTGGCCACATTATGCTAGATGAGAAATTTAGCCCCACTTGTATTATGCACCCAGATACTTACCTAAATAAGGTTATTATTGGAAGTGACCAAGGCCCTATGCAGCTTTGGAACATTAGCACGAAGAAAAAAATATTTGAATTCAAGGGATGGAATTCACCTATTTCCTGCTGTGTCTCGTCTCCTGCTCTCGATGTTGTTGCTGTTGGCTGTACAGATGGAAGGATCCACGTTCACAACATCCGCTATGATGAAGAGTTGGTTACTTTTACACATTCTACACGCGGTTCTGTGACTGCTTTATCTTTCTGCACTGATGGACAGCCCCTTCTGGCTTCTGGAGGTTCATCTGGTGTTATAAGCATATGGAATTTGGAAAAGAAAAGGCTCCAGTCAGTTGTAAAAGAAGCTCATGATGGTGTGATCACATCACTACATTTTTTTGCTAATGAGCCAGTTCTAATGAGTTCATCAGCAGACAATTCTATTAAAATGTGGATTTTTGACACAAGTGATGGTGACCCTCGCCTTTTGCGCTTTCGAAGTGGGCACAGTGCTCCTCCTCTTTGCATAAAGTTTTATGCCAATGGAAGACATATTCTTTCTGCAGGTCAGGATCGCGCTTTTCGTCTATTCTCTATTGTACAGGATCAACAAAGTAGGGAGCTTTCTCAACGCCATGTATCTAAACGCGCTAAGAAGCTGAGAGTGAAGGAGGAAGAAATAAAATTGAAGCCTGTGATTGCGTTTGACTGTGCTGAAATAAGAGAGCGTGATTGGTGCAATGTGGTTACTTGTCATATGGATACTGCCCAAGCATATGTGTGGAGACTTCAAAATTTTGTACTTGGTGAGCATATATTGAATCCATGCCCTGAAAATCCAACACCAATAAAGGCTTGTGCCATCAGTGCTTGTGGCAATTTTGCCATTTTAGGGACAGCTAGTGGTTGGATTGAAAAGTTTAACCTTCAATCGGGAATTCACAGGGATGCTTACATTGACGTGTCAAAATCAAGAAGTTGTGCCCATGATGGTGAGGTGGTTGGAGTTGCTTGTGACCCAACAAATACTCTCATGATAAGTGCAGGATATCAAGGAGATATAAAGGTTCGCATTTCTTGTCTCCTGGCTACAGTAGCCGATGATTTAACAATCAGATTGTTTGACGTCGTGGCTCTCAGACTAGTTCGTAAATTTGAAGGTCACACAGATCGTATAACAGATTTGTGCTTCAGCGAGGATGGGAAGTGGCTTCTGTCCTCCAGTATGGATGGAAGTCTTAGAATTTGGGATTTGATGTGCCTGCCTATCACAGCACTATCTCTGTCCCCAAACATGGATATATTAGCAACTACCCATGTTGATCAAAATGGGGTATACCTATGGGTAAACCAGGCAATGTTTTCCAGCACTTCAAATGTCGATTCATACGCAAGTGGAAAAGAAGTTGTGAGTGTCAAGCTGCCATCTATCTCTTCCACAGAACATACTGAAGTTGAGCATTCTGATGAGCTGGTGAATGCCTCTCAACCAAAAGATGCTCCAGCTTTCCAAATCCAGGATAAGCAAATACCTGATTTAGTTACACTTTCATTGCTGCCCAAGAGCCAGTGGCAAAGCTTGATCAATTTAGACATTATAAAGGTTCGCAATAAACCTATTGAGCCCCCCAAAAAACCTGAAAAGGCTCCATTCTTCCTGCCTTCAGTTCCATCCCTCTCAGGGGAAATATTGTTTGAGCCTGGTAAGGTATCATCGAAGGAGGATGGAATAGGTGATGAAAAACAAGTAAACAAGACAAGAATAGATATGCAGCCATCCCATTTTCTGTATCTCCTTCAATCCTCAAAAGAGACAGACCGATATGCAACATTCACTAATTATATCAAAGGATTATCTCCATCGACTCTTGATATGGAACTCCGGATGCTTCAGATCATTGATGACAATGATCAAGAAGAAGATGAGAAGAGACCTGAGTTAGAATGGATTGAACAACTTCTGGATTATTTTATTTATGAGCTCTCATGCAGAAATAATTTTGAGTTTCTACAAGCTGTCATCAGGCTATTTTTAAAGATACATGGTGAGACAATTCGGCAACATTCACTCTTACAAGAAAAAGCAAAGAAACTCCTAGATATTCGGTGCATGGTATGGCAGAGGGTAGACAAGTTATTTCAAAGTACGAGGTGTGTGGTTTCCTTTCTTAGTAATTCCCAAATTCACATGTAA

Protein:

Promoter(3k):

>AM01G036990.1
GGGTTCCCTCATCGTGTACGGGATAGCGTTTATATTATGTAAGTCTATCACGTTAGGAGGGATGCATCCTAGGCTTAATAATTAAAAATGAATCAAGAGTGTATTATGATAATGGGGCACGATAGAACTCACTGAGATAGTATCTCACCCCTCATGTTTTGTTGATTTCAGATTCACAGAAGAAGGTAAGAAGAGGTTACAATTCAGGTTCAAGGGCCCTAATGCTTGAGGGTCATCATGATGAGGAGATTATCAATGTTTTTGCTAATAGTATTTGATGTTCAGTTATGATTTCAAGTTCGGTTTATGAACCGAGTTAGACATTAGGAAATGCACTTGTTGGATGTTTATGTACTGATTATGATGATCAAACTATATTTCTCTATGTATCAAACTGTATTTTGATTATAACATGATCATTTCAGTCTTTATGATCATTTCAGTCTTTATGTTTAATCGTTTTATCGATAGTGCATCTCTGAAAGACTAAAGACTAATATTCCGAGTTTGTAAGGTCGACTTTAAACTTGGGATGTTACATTCCGATACTCGTAGGGGTGTTCGCGGTGCGAGTTGGTTCGTTTTTGAGCAAAAAAGTGAACCGAACCGAACCACAAGGTTAAAATAGATGCGGTTTGGTTTGGTTCGGTTGGTTTCTAAAAAAAAACAAACCAAACCAAACGAAACCAATACAGTTTGGGTTGGTTCGATTTTTTACGAGAAAAACACAATTTATAAATTTGCCAAAAGAAGGGAGAAAAATCTGCCAAAAGAAGAAAAAATTGTGTTGTTGCATATAATTACTAATTAGCATCAAAACACTTTCATACAAAATAAATATTATTCCAAACAAGAAAAATAAACGGAAAAAAGAAGAAAAACATTCTTTATGAGGTTTCTTCATATTTACATGTGTTCCAAAGCATTCTTGTAATAGGAAAAAATGATTTGGACCTGCGCGAGAGGTGCTAAAACATTAGAGCATAGTTGAAGCTACATATCAGATTCATATAAAAAATAGATTGATATCAGATTCATATCAAAAATTAGATTTTATATACATTGCATATTCATATATAAAAAAACTGTATTGCGTATAGGATTTTGCAGTTTTTGTTTGGTTTGGTTTCTATAATCAAAACCGCGAACCGAACCGAACCACACGGTTCACTAATAATAAAAACCGAACAGAACCAATAAGAAACAGTTTTTTGCGGTTTTCGGTTTGGTTTAGTTTGGTTTGCGGTTTTCTATTGGTTTGGTTCGATTTTGAACACCCCTATTCGGTAGTGGGAGCATGCTTGATAAGGAAACAAACTGAAAATTGGGGATTTGTTGATGGGGTCTAGAGTGAGTAGTGGAGCAGCATAAATAGGTTTCAAGAGAGAGAGAGAGAGTTGGTCTCTATTAGGAGGGGGACACAATTGTGGGGTAGAGAGAACATATGATGACAGGTAACGATTAGCATAAATGGCAAAAATATATCTGACTTGGATTTCTCTTTAAACAAATAATCTAGCCATCATCTTCTTCCCCAATTTCTTTCCAAATCAAACCCTAAATCTCTTAATACATAAGAGAGCTTTGAATCTCGGTCTCGCAGCAGCCATGATGTCATTTTATAGCAACACATCACATTCTCTCGCATCCCTTGGTGTCACAATGTTGTTTCTAGGGTTTCACCATTGTTGTAGAGGTGAAGTTTACGCCAACGACTCTATTTAATTTTTTCCTCTAAGTTTTTATTTTGTTTCAAATGGGTCCTCTAAGTTTGTTTAAAGTTTCATTATAGTTAATGACATGCTTTGTCTATTTTTTTGTGTTGTTTATTTAAATAGGCTAAATGAGTTGATTTTAGTCACTATTCAGGTAATCCATAATTAAGAGTACACTTAACGGAAAAACCATTTTAATTAACAATATAAAGATAAATGACGTAAATGAATATATTAAAAGATAAAAGACAAAAATGAATATTTTAAAAAAGACAAAGGACATAAATGAACATTTTTAAAAAGATAAAAGACGGAAACAAAAAACCGTTAAATGATCTACTTATGTGACAAAATTATTCATGTCACACTATCCACAAAAGCCATAATTAACCGTAACTGAAAGATACATGTTAATTAACTTTGAAAAGATAAAAGATGCAAACACATTTTTTAAAGGAAAAATGACGAAAGTGAAAAAATTGTGAAAGATAAAGGACAAAAAATAGTGTGTTTTAGCCAAAAACATTTCTCACTAGCGTTTAATTTATATACACTATAGATGTATAAATATTTTACACTAACTACCAATTACAAGTTGACACGTCATTAAAAAAAAGTCAATCAATTAATAACCATCTTATATGACAACCATACAATGAATTATTATTGGTTGTAGTTGTAAAAAATTTTACACCGATAATGCATAGTAGTAATTAAACTTTTCATAATATATCTAATTCGCACATATATATGATTTTTTTGGGGGTCGATGTGGCCATGTGGGTACGTATAAATAGAAAAAGAAATAAAAAAAAGGCTAAAGTGCTCCCGGGGTCCTTTATCTTTATTTAAAGTAACGAATTAGTCATTTATGTTTTTTTTGTCCCAAATAAGTCATTTATCTTTCAAATTTTTGACACATAAATCCTTTTCCGTTAACGGTGCTGATTTATGTGTCAAAAAAAGGATTTATGTGTTAAAAATTTGAAACATAAAGGACTGATTTGGGACAGAAAAGGATTTATCTGTCAAAAATTTAAAACATAAAAGACTGATTTGGGACAAAAAAAAGATAAAGGACCAAATCATTACTTTAAATAAAGATAAGAGACCCCGGGAGCACTTTAGCAAAAAAAAAAAAAAAAAAAGAGGACGAGCAAATTCGGTGCGTGTTTGTCTTCATATTTTTCAGTTAGTTAGTCAAGTTAAACCCTAACGGCCAAGTCTAAACCCTGAAGCAGAGCAAAGGCACAGAGTTGGTGGTGACTCGTGAGAGTTGAGCAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04192.15	Utp21	652	867	8.70E-57
PF00400.35	WD40	525	561	3.30E-30

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0032040	small-subunit processome	Cellular Component
GO:0006364	rRNA processing	Biological Process
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR007319	Small-subunit processome, Utp21
IPR024977	Anaphase-promoting complex subunit 4, WD40 domain

trEMBL

trEMBL term	Description
A0A1S2Z142	_

SwissProt

SwissProt term	Description
WDR36_HUMAN	WD repeat-containing protein 36

KEGG

KO	Description	Enzyme
K14554	U3 small nucleolar RNA-associated protein 21

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G04940	transducin family protein / WD-40 repeat family protein
Medicago sativa L.	MsG0680035883.01.T01	_
Oryza sativa L.	LOC_Os06g43690.1	WD repeat-containing protein, putative, expressed
Cucumis sativus L.	Csa012353	_
Glycyrrhiza uralensis Fisch.	Glyur001618s00028954.1	_
Codonopsis lanceolata	Cl_chr07_38780T	_
Arachis hypogaea L.	AH11G07900.1	U3 small nucleolar RNA-associated protein 21 homolog like

Expression pattern