Gene detail

Detail information of Am01G036040.1 Annotation

Gene ID	Annotation
Am01G036040.1	cyclic nucleotide-gated cation channel 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G036040.1	mRNA	Chr01	197831717	197837031	+

Sequences

CDS:

>Am01G036040.1
ATGCCTCCCAACCAACACCACTCTCCTATTTCACAAATGCAGCACTACTACTACACCACCGACGAAGAAGACGACGACAACGACAGCGACCTCGACAACAACAACGACTATACAAAAGGAGAACCCAACGTAGACAAAAGGATTCTTTTCTACGACTCTCGGCGATGGGAAACGCTGAACAGGGTGTTTCTGTTGGTGGTGTGTGCGACGAGGTTGTTCGTGGACCCACTCTACTTCTACGCGCTCTCGATAAGTGACACGTGTATGTGTCTCTTCATTGATGGATGGTTCGTCATTACCGTAACCGTTATACGGTGCATGACAGACGCGTTGCACCTCTGGAACATGTGGTGTCAGTTCAGCAGCGTCGCTAAGAAACGCTCCTCCCCCTACTTTGGCAGTTCCACCACCACAGTCTCACGTGTTCTTCACTATATTAAAGCCAATGGTGGATTCTTCTTCGACCTCTTTGTCATTCTCCCTCTTCCCCAGATATTGCTATGGGTGACAATTCCATCTCTGTTAAAGAAAGGATCAATCGCGCATGTGATCACAGTATTCTTCTTAATGTTCCTCTTTCAATACCTTCCCAAAATTTATCACTCAATTTGCATCTTGCGTCGCATACCAAACCTCTCTGGTTATATTTTTGGAACTGTTTGGTGGGGATTCGCTCTCAACTTGATGGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCATGCTGGTACTTATTGGGAGTTCAAAGGGCAGCAAGATGCCTAGAAGAACAATGTAGGAAAACAACTGGTTGTGGTCTAAAAACATTGTGTTGCAAAGAACCTATATACTATGGAACCAAAACCATGTTGAAAGACAAAACGAGGTTGTTATGGGCACATAACAGGGAAGCTAGGTCTACATGTTTGGCTAGTGCTGATAAATATGACTATGGACTTTATGAATGGAGTGTTCAACTTGTAACAAATGATAGCCGATTAGAAAAGATACTTTTGCCTTTCTTCTGGGCACTAATGACTCTCAGCACTTTTGGGAACCTCCAGAGCACAACGGAAACTGTAGAAGTCATTTTCAACATTATTGTATTGATTAGTGGCCTCATTCTCGTTACTATGTTAATTGGTAACATCCAGGTATTTTTACATTCTATAATATCAAAGAAGCAAGCGATGAAAATGAGGATGAGGAACATTGAATGGTGGATGAAAAAAAGACAGTTGCCACAAGGGCTCCGACAACGTGTGCGTAACTACGAACGACAATGTTGGGCAGCTATGCGCGGGGTTGACGAATGCGAGATGACCAAAAATCTGCCTGAGGGTCTCAGAAGGGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAAACAGGTACCGCTATTTCAGCATATGGATGATTTGGTTTTAGAGAACATTTGTGATCGTGTGAAATCCCTTGTATTCACAAAAGGAGAAACACTAACTAGAGAGGGAGATCCAGTTCAAAGAATGATATTTGTGGTAAGGGGTCACCTAGTAAGCAGTCAAGTCCTACGAGACGGTGTAAAAAGTTGTTGCATGTTAGGCCCAGGAAACTTCAGTGGTGATGAACTTCTATCATGGTGTCTAAGAAGACCATTTATTGAACGTCTTCCACCATCATCATCCACTTTGGCAACACTTGAAACTACTGAGGCATTTGGACTTGAAGCAATGGATGTGAAGTATGTGACACAACATTTTAGGTACACTTTTACTAAGGAAAAGGTTAAGAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTCATAAGTTGACTTTGACTTCTTTGTCATTTATTAGGCCTCGTAGACCTGTGTCTAGGTCTACTTCTATGGAAGAGGATAAGCTTCGTCTTTATACAGCTTTGTTAACTTCACCAAAGCCTATTCATGATGGTTTTGACTCTTCTTAA

Protein:

Promoter(3k):

>AM01G036040.1
CTTACTATTGTGGAAGATAAAAGAAGATTCACTTGGATTTATCCAATGAGACTCAAATCTGAAACTGCAACCATTATCAAGTCTTTTGTAAACTTGGTTGACACTCAATTCAACATCAAGTTAAAGTGCATAAGATCTGATAATGGATGCGAATTTTTACTCAAAGATTTTTACAATGAAAAGGGCATACATCACCAAACATCATGTGTTGAAACTCCCCAACAAAATGGAGTTGTTGAGAGGAAGCATCAACACCTTCTTAGCATAGCAAGAGCCCTTATTTTTCAAGCTAAACTCCCAAAAATTTTCTGGGCACATGCAGTCCAACAAGCTGCATACATTATAAATAGATTACCAACAAGATTCTTGAGCCAATTGACCCCTTTCCAAGTTCTCTTTGACAAGAAACCTGATTTAGATTGCTTAAAGGTTTTTGGTTCACTGTGTTTTGCTAGCACACTCAAAGGAAATAGAAAGAAATTTGATCCTAGATCAAGAAAATGCATTTATTTGGGCTATAAGCCAGGAGTCAAAGGTCACTTACTTTTTGATTTACAAAACAGAGAAATTTTTGCATCTAGGGATGTTAAGTTTTATGAAAAAATCTTTCCTTACAAATCTGTTGCAAATGCTCAGTATAACTGTCAATTTGAGCCAAGTCACTACAACCACCATAATTCCTTTGCTGATGATTTTCACATTCCCCATAATCCATCACCAGAATCAGATACAAATCCTCAAACATCCCTTGACACATCAGCTACACAAACAACTGTTACTGAACCTAATACAGAAAATACAGAAAATACAGAAAATACAACTCAAGAAACTTTTGACCATTCATCACCAACTCATGACCAACCTCCACCTTCACCACCAATTCCTGTAGCTGATAATCTTAGAAGGTCCACCAGAGTCCCAAAACCCCCTGCTTACCTTCAAGAATTTCATTGTTCATTGTTGAGTGATACACTCCACAACTCCAATTCAGCTACCTACAATCCACAATCTCAAGGTAAACTTTATCCCATTTCTAATGTTATTTCATATGACAATTTATCATTACCTCACAAACAGTATGCCTTGAAATTATCCACCATTTCTGAGCCAAACACATACCAAGAGGCAGTGAGTAATGAAAATTGGAAGAAAGCTATTACTGCTGAGTTGAATGCTCTGGAGAAAACAAAAACTTGGAAGCTGATGCCTCTCCCTCAAAACAAAAAGGCCATTGGATGCAAATGGGTTTTCAAGTTGAAACTACATGCAGATGGGAGCATTGAGAGATATAAAGCCAGGCTGGTGGCTAAAGGATTCACACAAACAGAAGGTCTTGATTACACAGAGACATTCAGTCCTGTTGTCAAGATGACCACTGTAAGAGTCCTACTGGCCATTGCAGCTGTTCAAAATTGGCACTTGTGTCAATTGGATGTGAACACAGCTTTTCTACATGGAGATTTGGAAGAAGATGTGTACATGAAGCCTCCCCCTGGTCTTGATGTCAGCAATCCCAATATTGTGTGCAAACTGGAGAGATCTTTATATGGACTTAAACAAGCCAGCAGACAATGGAATACAAAATTGACTGAAACTCTACTTGCCACTGGTTACACACAGTCAAAGTCAGATTATTCATTGTTCACTAGCAACACCAAGATGGGTCTCACAGCTATTTTGGTTTATGTAGATGATTTAATACTAGCTGGGACTGATATGCAAGAAATCAACAGAGTTAAGGAATTGTTAGATGCTAAGTTTAGCATCAAAGATCTTGGTGACTTAAAATATTTTCTGGGCTTTGAGGTTGCTAGAAATCAACAGGGAATTTCCTTATGCCAAAGGAAATATGCCCTTGATCTATTGGAAGCTACGGGTCTCACTGGTGCCAAACCTTATTCAACTCCAATGGAGCCTCACTTGCAGCTACACAAGGAATCAGGAAAACCAATTGATGATATCACTATGTACAGGAGGATGATAGGAAAATTACTCTATTTAACACACTCAAGACCTGAGATTTCATATGCTGTGGGTAAACTCAGTCAGTTCCTTGACAAACCTACAGACATTCACCTGTTAGCAGCAACACATGTTATCAGATACATCAAAGGTCACCCAGGAAAAGGTCTATTCTTTAGCTCAAACACTACCATCACCTTGAAGGGATTCTGTGATTCTGACTGGGCAGCTTGTCCAGACACAAGAAGATCCACTTCTGGTTATTGTTTCTTCTTGGGATCTTCATTAATATCTTGGAAAAGTAAGAAACAATCAGTGGTCTCTCGCTCCTCCTCTGAAGCTGAGTATAGATCCTTGGCTCAAGCAACTTGTGAAGCACAGTGGCTTCTTTACCTTCTCAGAGACTTGCATATTCCTCACTCTGCACCAGTAGTTCTGTATTGTGATAATCAATCTGCACTACACATTGCAGCTAATCCAGTATTCCATGAAAGGACCAAACATATTGAAATCGACTGTCATGTGGTTAGAGACAAGATTCAAAGTGGCACTTTGCATCTGATGCCTATTTCTTCAAAGGAGCAGGTAGCTGACATACTCACTAAGTCTCTCAGCCCCACTCTGTTTCAACAGCTCCTTTCTAAGCTTGGAATGATCAACATCTATTCCAGCTTAAGGGGGGGTATTGAACAAAGTGAAGAAAAGCAGAAGTCAACTCCAAAGTCAACTCAGTGACCCCTGTTATGCAAATCAGATATTGTATTTAACTCTTCATTTATTTTAATTCTAGTTAGTAGTGAGTTAGTGAAAAGCTAGATTAGTCTTAACCATAGTTGTAACTGCCTACTCTAGTCAAGGCAGATGTATATAACTCTCACTTTGTGTAACTAACTAGATAGTTAGTGTGAAACAGAATCAATTCTTTTTCTGAATCTGAGATCAGAATTTTCATCTCTCTCTCTTTCTCTTTCTCTCAAACTCATCCATGGCTTCCATAGATTCAATACATTTCAACCACCACCACCACCACATTCCCCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	62	378	3.60E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009626	plant-type hypersensitive response	Biological Process
GO:0030552	cAMP binding	Molecular Function
GO:0016301	kinase activity	Molecular Function
GO:0006812	monoatomic cation transport	Biological Process
GO:0008324	monoatomic cation transmembrane transporter activity	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0AAN9KX37	_

SwissProt

SwissProt term	Description
CNGC4_ARATH	Cyclic nucleotide-gated ion channel 4

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G54250	cyclic nucleotide-gated cation channel 4
Medicago sativa L.	MsG0880044558.01.T01	_
Oryza sativa L.	LOC_Os01g57370.1	cyclic nucleotide-gated ion channel 2, putative, expressed
Cucumis sativus L.	Csa019759	_
Glycyrrhiza uralensis Fisch.	Glyur001720s00031703.1	_
Codonopsis lanceolata	Cl_chr03_38680T	_
Arachis hypogaea L.	AH08G20930.1	Cyclic nucleotide-gated ion channel 4 like

Expression pattern