Gene detail

Detail information of Am01G033240.1 Annotation

Gene ID	Annotation
Am01G033240.1	Pectin lyase-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G033240.1	mRNA	Chr01	189424641	189426839	+

Sequences

CDS:

>Am01G033240.1
ATGAGCTTTGAATATGCAGTTATGAAACCTAGGCCAGCTGTTGGTCGTGATATCTACGGGAATGTAAATCTTGCTAAGGATGCTCCCCTTCCTGGGGAGAAAGTAATCAACGTCTTGAGTTTTGGTGCCAAACCTGATGGTGAATTCGATTCTACAGAGGCTTTCATGCAGGCATGGCAAGCGGTATGCAAAGCCCCAGGGCAAAACCGGTTTTACGTTCCAGCTGGCAAATTCCTCGTTTCTTCAATGTTTTTCCAAGGGCCATGCCTAGCTCCAAATTCAGTAACAATACATGTGGAAGGAACCGTTTTGGCTAGCACAGATATTTCTGAGTATGAAAACGGTGAATGGCTCATGTTCCAGAAAATCAATGGCCTAAAAATCATTGGCGGTGGTACTTTTGATGGCCAGGGTCAATCATCATGGGAATACACCCAGAACTGCGAAACAGGCAACGAACAATGTGTCAGAAATCCCAGCAGTCTCTTTTTCGCGGATGTAACCAACCTACTTGTACAAAACATTAGATCGGTCAATCCCAAAGGCTTTCACATATTCGTTACTAAATGTTCAAATGTTAGGCTGCGTAAACTTAAGATCATTGCACCTGAAACCAGCCCTAACACTGATGGCATTCATATTAGCAGCTCCGTTAATGTGCAAATTGCCAGAAACACCATTGAAACTGGTGATGACTGCATCTCTATGATTCAAGGAGCCGAAAATATTTTCATTAATAGACTCAAGTGTGGACCTGGACATGGTATCAGCATTGGTAGTCTTGGAAAGGTCCCGGATGAGCGACCAGTGTTGGGCATTCGTATCAAGAATAGCGCATTGAGTGGCACAACCAACGGTCTTAGAATCAAGACGTGGCCCGAAAGATATGGAGGTGGAGCATCAGAGATAAGCTTCAGTAACATTAATATGACTAATGTTAAAAATCCCATCATCATTGACCAGGAGTATGAATGTTATCCAGACTGCAAAAAGAAGCCATCACTTGTGAGGATTAGAAATATCCATTTTTCAAATATAAGAGGAACTACAACTTCGCCAATTGCAGTGGACTTGAGATGCAGCAAGCAGTTTCCATGCTTGGGTGTTACAATTAGAGACATCGATCTGAAGTTTGGAGTTGCCCCTTCAGGCGCTAGATGTGTCAATGTTAAGCCTGTCTATGGTGGCGTGATGAACCCACCAGCTTGCCCATAA

Protein:

Promoter(3k):

>AM01G033240.1
GTACCACCAATTTTCAGAATTTAAAATCTGTGTAATAGTCCCTAGTACCACAAAGACTGATTCCTACAACAACAAAATTTCAAACCTGTTAAGTAAAAAGTGGCTATTGACTAATAAGTAAAAACTGTTAATCTGAAGTTTAAAATTGTCTTTTATAAAATAGATATCAACCCTTGTGCAATCTTTGAGCCCTTGAATGGTTGTCCTTGGTGTGTTGTACAGAAATTCATCTGAAGGATCGATCTTTGGCCCAGCATTGAGTGGTGTTATGCATAATGGTGAAGGAGAATCGACATTCTCAGTGAGGCTATTACCAAAATGAAATAAATGAAATCTGATTATATTAGAAATTTTTTAAGTAACAAAAACTATGAACGTAATAAAAAAATCATTAACTACGTCAAAGTAAACCACCTGTTTCACATCAGGACACCATCAACACATGTTGGGTTAAACACCACTTTAGTGCAGCCCATTGAATTCTGAATGTGTATTTTATCTACAATTTCGATATCAACAACTAAATCACAATGTATTTTATTATAATAATGTTAACAAAGATAGAAACAGAGAGATTTGTCAACATGATTAAGATACTAACCTTGAAAAAGTTTCACCTTAGCTAACTGTATAATAACCACAGCATTTTGCAAATCACCAAATGCCATAAAAGTGTTGAGATCATCAACATAGCTTCCAAAAAGGGTGCATTGAATCTTATGGCTAGACAGATAAAAAGAGGGGCATAAAGTTCATATTATATTAAACTAAGAAAAGAAAACTTTACCCCATGAAAACTTCATTACTTTACTTAGTTTTGAAAGAAAAAGTAAAACACGGACTTAATACTAAAACTTAACATGAACAATACATTGGACTTAGTAATAAAAAACTGATATTTTTTTCTCAGCAAACGAAAACTAATGATATCAAAAACAAATTAAAGACTAATAAACATGATTTACCCAGAAGCTTCTAAAACAATGACATTCAACTTGGTGGTTGTCCCCAGTTCCCCCAACCTCCCTCTTTGTTCCTACTCCGGTCAAAACACCAATCACATCTGAAAAAAGTCCAATATTTCATTATAATATGTAAAAGAAATAATGCGAAAGAGTTGTCGATATATCGTGATTGCTGAAAATAAATTTAAAAATAGACTCACCAACCAAAAAATCAGTGTCATACGAACCACCAACAATTTCAGATATTGGAACCAAATGATAGGGAGACAAATTAATGATTGCATTAGGAAGGGGAACAACTCTGCTTGAAAACTGAAAGTTTAGTTTAAAAGGATGGTGGGTTGTCCTATAACTACCTCCATATGATGCAACACCCATATTCTCAAACAAATAAACATTACCCTCAGTAATATCATTTTGAAACTTGTAAAACAGTGTTTTTTTCACAGTTGCGTGAATTCTCCCCCCCCCCCCCCCCCCCTCAGCATCTAAAAGGACCATCTCAACAGAAAATGGCACAGTTTTCTATTGAAGTCATAAACTACCCACAATCTAATTACTTTAACTTTGACATTCCAAGAAGTTTGTGAAGAATCAATTTGAGAAATGGATTGGCTGGCCATGGTTCAGGTTAAGAATAGGCAGCAGATGAAAGGAGAGAGGACTATGGTGCAAAGCTGGAAGTGCCTTGAAGAAAAACTAAGGAAGAAAGGATGTTTGGGTTTGGGTGTAGTATCTTTGAAGATAGAGCCCTGTTTATATAGAACTTTAATATAGTCCATGCTATAAAAAATAAATGTAAATGATAAACTACAAATAAAACATAATACATAATATAATAATATATATGTATTATATAATCAATAATCAGGTTAGAAATCAAAGACAAGATACATTATTATCATTTTAATTCTGCATAATATAACAACCTCAGTAAGGCCAGATTTTGTAACACTGCAACATTTATAATTCTAATTCTAAATCTAAATAATCAAAACGTGAAAAAACAAACAATCATATAGCAAACAAATTGATAAAATAAAAAGTTATAATTGAAATTAGAAATCAAAGAGCGGGAATGTTAAACTCACTGTTTCAAAAATTGTGTTGGAGATTTGAGAAATCCAGCTGGTGCTTCATCATCAATCATCGAAAAGGGAAAGGGATGTGGTAGGGAGGAATAGTGTCAACCTAAAAAGCAAAAATTAGAGAGAAATTTCGGTAATGTTAGGGGAATGGGTTTAGGGTTTCTCGAGAGTTGAAAGAGAAAAAAATTGAAATCAAAAAATCCTTATCCTAAGCAGTATCACCACGTCAAAGAGGAAACAATCAAAGAGCAAAGAAATTGATAAAATAATAGTTTTAAATGAAAGATCAGGAACCTTAAACTCTTTTTTCAGAAACTGTGGTGATGTTGACAAATCCATCTGGTGCTTGATCATCAATCGAAGAGGGAAGGACTGTGATAGGGAGGAATGGTGTAAACCTAAAAGTGAAAATTTGAGAGAAATTTCGGTAATTTTAGGGGAATGGGATTGGGATTTCTGAGGAGTTGAAAGAGAGGGGATCATTGTCTGGTTCATGGTGATAACTTGAAAAAATCGTTGATACAGGGGGGCAGTTTCTGCGAATTTCTGAAAAGAGAGAGGGGGTGTGTTGTTGTCGTTGTTGTCTGATTAAAGCAAAGAGGGGTATGAGTTGTTTGGGAAGTTTTAAGAGGCTGGGGAGTTGTGGGAGAAAAAAAGATACATAGGAGAGGAAATATACGGTTGGGAAGAGTGAAAAATGAGATAGGCATCTGAGTGAAGAAGAGAGAGAGTCTGGTCAATGGTCAATTTGAAAGGGATATGTTTTATATGTTGTTAGAAAAAAACTAAACAAATGTTGTACATCTTCATTTTATATTGATATTGTGGTTTTTTCAGAATAAAAGTATAAGAGGTAGGAGTAAATAAGGTATGTTTTTAATAATAAAGAAATGTGATGTGGCAAAACCTATTTGAGAAGTTGACATGTGTAAAAGATAGCTTAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00295.20	Glyco_hydro_28	63	391	2.80E-93
PF12708.10	Pectate_lyase_3	36	259	1.50E-11

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0010047	fruit dehiscence	Biological Process
GO:0009901	anther dehiscence	Biological Process
GO:0047911	galacturan 1,4-alpha-galacturonidase activity	Molecular Function
GO:0016829	lyase activity	Molecular Function
GO:0009057	macromolecule catabolic process	Biological Process

InterPro

InterPro term	Description
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold
IPR006626	Parallel beta-helix repeat
IPR000743	Glycoside hydrolase, family 28

trEMBL

trEMBL term	Description
A0A1S2YQ75	_

SwissProt

SwissProt term	Description
PGLR_GOSHI	Polygalacturonase

KEGG

KO	Description	Enzyme
K01213	galacturan 1,4-alpha-galacturonidase	[EC: 3.2.1.67]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18180	Pectin lyase-like superfamily protein
Medicago sativa L.	MsG0880047070.01.T01	_
Oryza sativa L.	LOC_Os08g23790.1	polygalacturonase, putative, expressed
Cucumis sativus L.	Csa013524	_
Glycyrrhiza uralensis Fisch.	Glyur000227s00015108.1	_
Codonopsis lanceolata	Cl_chr01_06580T	_
Arachis hypogaea L.	AH11G30830.1	Polygalacturonase like

Expression pattern