Gene detail

Detail information of Am01G032760.1 Annotation

Gene ID	Annotation
Am01G032760.1	Zinc finger C-x8-C-x5-C-x3-H type family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G032760.1	mRNA	Chr01	187916184	187920728	-

Sequences

CDS:

>Am01G032760.1
ATGGAACGGTACGGCCGAGCCAGTGAAGGTTCACAGTCTGATCCGTCACCGGAATGGACTGTCGGTGCCGGAGAGACAGGCCATGAAGAATCAGTGTGGCAAGTTGGATTAGCTGGTGGTGAATCGTACCCTCAGCGACCAGATGAAGCTGATTGTATCTATTATTTGAGGACGGGATTTTGCGGTTACGGTTCCCGGTGTCGGTTCAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTACGAGGACTGCAGGGGAGTATCCAGAACGAGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCGTGTAAATTTGGTGCATCCTGCAAGTACCATCATCCTAGACAGGCAGCAGGCACCACTCCTCCGGTGTCACTAAATTATTATGGATACCCGATGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAATGGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCACCATCCACAGCCTGCAGGTGTCCAGATGCTAGCACCATCACCAGTTCCCCCAGTTTCACCTTTGCATGTGCCGCTGCCTTCACCAATTTATCCATCTGTACAGTCTCCATCTGGTCCTTCATCACAACAATATGGTGTACTTGTTGCTAGGCCACCTCTGCTACCTGGCTCAGTAGTCCAGGGCCCCTATGGGCCTATGATAATGCCCCCTACCATGGTCCCTTTTTCGGGATGGAATCCTTATCAGGCTCCCACTAGTACTCCTTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCAGCTACCTTCACCAGGAACCGCCTATACCATACCATATCAACCTTCTGGCTCCTCAACTGGCCCTTCAGGCAGTAGTCCAAGGGAGCACTCATTACCAGAAAGACCAGATCAGCCAGAATGTCATTATTACATCAAAACAGGGGAGTGTAAATTCGGTCCATCGTGTAGATATCATCATCCACCGAACATGGGTGCACCAAAAGCGAATGTGAGCCTTAGTCCCTCCGGTCTTCCTTTGCGCCCGGGCGCACCACCTTGCACTCATTATACACAGCGTGGATTTTGTAAGTTTGGTTCTGCATGCAAATTTGATCATCCCATTGGATCCCTGAGTTATAGTCCATCTGCTTCTTCGCTGGCTGATATGCCGGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCTCCATCATCGTCATCATCTGAGTTGCGGCCTGAACTTGCCTCAGGATCCAGCAAGGAGCCTGTTTCATCCAGAATGTCTTCATCGACAAGCACATCAACTACATCAGTTGGCTTGGCTTTGTCAACTGTTGGACCCATTTCTCAATCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTATAGCAGCTCCCAGTGCCACCACAAGTAGCACTGACTCTCACACCCCAACCTAA

Protein:

Promoter(3k):

>AM01G032760.1
CTCGAAATAAAGCAGAGGAGATGACTGGATCTAAAAGAAATTTTTGCTTGTCGATCTACTGATGGGCTCCGCTTGAAATGCCTTAAACTATCGCCGAGTTCGCTTTACTCGAAGGAAAGCTCGACAACTCAAGACCGGTAATCAGAGCAGAGAGAGTTAAGTAGCAACAAAAATGGAAGAAAGTGACTTCCTATTTATAATGGGGCGAATATCATGGGCTGGGCCTGAAAGTCGAATCAACACGTCGAATCAAAATCCAAGATTCACGCACTAAAAACAAGACGTCACCATCATTAGCCGCCATCGTAATACGCGTCGTGTCAGAAAGCATTTAATGCCTGACACAGAACACGAGGCGTTAATTCCTCTACTCAACAAAAATTTCCGCCTTTTCTTTCCTTCAAAAAGCAAGCTCGGTACGTCCCATGATCGACTTGAACAAATCAAGGATCGAACATCACTGATCAAGAGCGACATCCACCAACTCGTTAAGGTCGGAAGCACGACACAGAACATTAGCGACAACACAAGGTCGTCCCAGCTTATCAAGTCAAGATCGCCCCTCAGGCGACCATACTTGGGGGACCACTGTTATGGTAATAGTATAACTGTTATTTGCACCCCCCTGCAAGGCCCATTAACCAAGCAGCCCACATCGAGATAATTCAACCCAATCAATTAACGGATCTGATACCTCAGCAAGATCTAATGGTTCAGGATCATCAAAGCAAGCTTCACTCAAACTCTATAAATACCACATTCAATGGTCATTAAAGGCATGCAATTTCTCTAACCAACATTAAATCATTAAAATACTGACTTGAGCGTCGGAGTATTCTTGCAGGTACAACACCGCCATTTCAAGATCGAACACCACTGATCAATGACGACATTTACCAACTACCTCAGACAACTCATTAAGTTCGGAAGTACGGTACAGAACAGTTACCAACTGCAAAATTGTGCATGACTGGATTTTTTATACTTCTAACAACCCAAACGTGTACTAAAGTAACTAAACCCTCTAGCCTCAATTATAAACACGCTGAACCTTAAGACGAACAATGAGGTGTCAAACAAACACGCTAAACCTTAGGACGAAGAATGACGTGTTAAACACGCTAAACACGCTACACCTTAGTACCACCTCAACCAACAACCGGTATAAAGGGGACTTTTATTAGACTATGTAACATAAACGGAATCTAAATCCAAGTAGCGGGCCATTCAATTCGGAGACGGTTTTAATAGGCTATCTCCTAAATATTTTTATTCTTGTTTTGTTTCTCATGCTAACTCAACACTTTTACTAATACATTTGGTTCCAAATATGAGAAACAAATGGTTCAATTTATAAGAAACACCAACCCCTTTTTAAATGTATTAATATTAACCTAAATTTCATTCATACCCTTATTATTAGAAAATATTACGAGTAGTTAAGTTAGTAAAATTAGAAGTAATTACTCCCTCCGTCCCAAAATATAAGACCGATTTTTCATTTTTAATTGTCTCAAAATATAAGGCTATTTACAACTTTCTAGATACATTTATTACTCTTTTTCCAAATATATCCTTATTATTAGCACTAATTCTTGTTGGTATATGAAAAATTAGCATTGAATGTTTAGGGTAATTTAGTAATAGTCATACAAAATTTAAACATATTAATTACAAAACTAACTTTTCTTAATAACCCGTGAAAAGTGCCGTGTGGCCTTATATTACGGGATAGAGAGAGTAATATAAAAGTGTTTATAAAAGAAAGTTTAAATTATAAGTGTATTAAATCATCAACATATTTAACGAGCTCGTCTGGCCAGTTGGTCGAGCCTACCGCTGGGACACTCGGGGGGTCGTCACGGTTTGCTCCTGTGTTCGATTCCCTGCGGTGACAAACAACGGGTTGGCCAATGCAATCGTTGACGGTAATGTCATTGGCCCAACGCATGAGCGCATATTAGTCGACACTGCGTGGGTAGCCAGCGATATCCCAAATAAAAAATCATCAACATATTTCAATATATGCATTAATCTCAACGGAACTGAAAGTCAGTATCTCAAAATCCCACAGTAACATTAGTACTAGTAGTTTAGTAGTTATAGTTACTGTTAACCTTTTTACCACTTTTAAGTAAGATCGGTCTTTTACGCCACGTGGAGCCAATAGGACCTCTCTCTTGTTTCACATCTGCAGCCACCCGCCACAGCCCATGACCATGAAGATTAGTTTATTGGCTTGGCTATAAGTATATGAATCAACGTCTTCATTACTTTTTGTATTAACTCTAATACGAAAGGACAATTCTGTCATATCACGTGACGTATTGACTCTCACCAGCACTTGTGCTGTTGTGCACGAGCTAGTAAAGTTGAGGGGCATTTTGGAAACCCTTTTTCTTTTTCTCAATCAATCAATGGGCCATATAAATCTCACCCAATTTGTTGTTTTGTTGGTTACCTTACCTATTCAACTAAATCTCTTCATATATTTACTAACTTTTTTTACTATATTTTTCCTATTTTAGTCTTTTTAATTCTAATTAATTCCTACTAAAAACAGCAAACCATAATAAATGTGACGAATAATAAATAACTGCATAGTGGGGTTATTTTATTTATGGTAATTTTTGTGAGATGTTTGGCGCGTACATACATAAAAATAAACCAACTATAACTCCCACCAATAAAAAGAGGCTCTCCTAAAGTAAGTCATAGAAAGAAAAAGGAAAAAATTTATCAAAATTAAATAAAAACGCTTTGAAGTGGAAAGAGAAAGATAGAGAGAGAAAGAGAGACCAAAGCAGTGTAGAAGAAACAGAGACGCTGTGTTTGTGTGTGTGTGTGTGTGTGAGAGAGAAACCCCAGAAAATCCGAACTCGTTTCTCACTCAAGTTTCTTCATTCAAAACCTTTTGATCGGAACCTCTCATTCTGTATTGGGGGGTTGTAAAAGCGTTTTCAGATTGCACCACCCCTTATCTCTCGTTTGGTCCGTACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	48	73	1.90E-44
PF00642.27	zf-CCCH	94	118	1.90E-44
PF00642.27	zf-CCCH	140	164	1.90E-44
PF00642.27	zf-CCCH	298	323	1.90E-44
PF00642.27	zf-CCCH	345	368	1.90E-44

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0003729	mRNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0016301	kinase activity	Molecular Function
GO:0016773	phosphotransferase activity, alcohol group as acceptor	Molecular Function
GO:0140096	catalytic activity, acting on a protein	Molecular Function

InterPro

InterPro term	Description
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type

trEMBL

trEMBL term	Description
A0AAN9N440	_

SwissProt

SwissProt term	Description
C3H58_ARATH	Zinc finger CCCH domain-containing protein 58

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G18550	Zinc finger C-x8-C-x5-C-x3-H type family protein
Medicago sativa L.	MsG0280007058.01.T01	_
Oryza sativa L.	LOC_Os01g15350.1	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Cucumis sativus L.	Csa000042	_
Glycyrrhiza uralensis Fisch.	Glyur000055s00004545.1	_
Codonopsis lanceolata	Cl_chr01_57560T	_
Arachis hypogaea L.	AH11G30250.1	Zinc finger CCCH domain-containing protein 32 like

Expression pattern