Gene detail

Detail information of Am01G031750.1 Annotation

Gene ID	Annotation
Am01G031750.1	ubiquitin-specific protease 23

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G031750.1	mRNA	Chr01	184646782	184653730	+

Sequences

CDS:

>Am01G031750.1
ATGGCGGAGTGTTTACAAACTGAAATTGAAAAGCCGAATCAGACAGATACCTTACCTAGAAAAATCGATTTCGTCCCTGTCAGGAAACCCTTCAAGGGCTTTTCCAATGATTTTCACATCGAAACCTTAAACCCTACCACCACCGAACCTCGACAACATGGTTCAGGTACCTCGCTCGCAGTTTCCAAGAAACACGACGTTACCGAATTCTCTGAGTATGGCTTGGATCCAGACCTCAGCTTCGGGATGACCGTTCGGAGAATAGGAGCTGGACTGCGTAATCTTGGAAATACTTGTTATCTTAATTCAGTACTGCAGTGCTTGACGTATACTGAGCCTTTAGCTGCATATCTGCAAAGTGGCAAGCATAAATCTTCATGTCGCATTGCTGGATTTTGTGCTCTATGTGCGATACAAAATCATGTGAGTCGCGCACTGCAATCAACTGGGAGAATATTATCCCCCGAGTCCTTGGTTGGAAATCTACGGTGCATATCACGTAATTTTCGATATATGAGGCAGGAGGATGCACATGAGTATATGGTGAACTTACTCGAGTCAATGCACAAATGCTGCCTGCCTTCTGGAGTACCTAGTGAATCACCTGGTGCTTATGAGAAAAGTTTGGTTCATAAGATCTTTGGTGGTCGTCTCCGAAGTCAGGTGAAATGCCAGCAGTGTTTGAATGGCTCTAGCAAGTTTGATCCATTCTTAGATTTAAGTCTGGAAATATTCAAGGCAGACTCATTGCAAAAAGCACTAACAAATTTCACAGCTGCAGAATTGTTGGATGGAGGGGAAAAGCAATACCAGTGTCAACGATGCAAGCAGAAAGTTAGGGCTTACAAACAGCTAACAATTCATAAGGCACCTTATGTACTAACAATTCACCTAAAACGGTTCCATGCGCATGACACTTCACAAAAGATTAAAAAGAAGGTTCATTTTGGCTGTGCATTGGACTTAAAACCTTTTGTCAGCGGCTCATATGATGGAGACGTAAAGTACTCTCTATATGGTGTTTTGGTTCATTCTGGTTCAAACACTCGTAATGGCCACTATTTCTGCTATGTTCGCACTGCAAATAACATGTGGTATACCTTGAATGACAACGAGGTAAGTCATGTCAGTGAACGAGAAGTTTTAAATCAGCAAGCTTACATGTTGTTTTATGTTCGGGATAGAAAAAGTACTGCCCCAAAGAAGCTTGTTAATGTTGCTAAGGAGGAGAATATGAAGGCTAATGTAAATGGAAATATAGGTTCTTCTACTTCAAACAATCTATTGAAAGAAGATCCAGATGGCCATTCAAAAACTAAATTTTGCGGCAAATCTTCGACTGCTGAAATTCAAAAAATTGTGTCAAATACCGATCCATCAAGGGTTTCATGTACGAAGGATGATCCAGATCAGCAAAAAAATAGTGTCGTATCAGCAGAAAGCTTGATGCAAAGTAAAAAGCTTGTATCTGAACTTCCTTCCAAGGCACATACACAGGAGGACTCATCCGTAGGGTTCTCCGTTGCTAAATCAGAACTTGAAGGCCTGTCATCCTTAGATCACTCTGGCAAAGACAATATTTCTCCAGCTGAAGATTTAATCATAGATTTGTCAAAGAGCACTATCCCTATAACTCCACTAATTCAACCTAATCTTATTCATAAGGTTGGAACTTCTGCAACTAGTTTGGTGGATGAGAAAACATGCACTGGAAAAGTGAGAAAATCACAAAAGAAGTTTCTGAAGTACCCGGCTCCAGGCATGCAACTTCGATCAAACCCCCTTTTCCTAGGGTACATAGGCCCGCGGAAGAAGAAGAATTGCAAAAGAAGTAAACACCGCTTGTTGGATTTGAAGAATCCTAATAAAGAAAAGTTGGAAAAACACAATATCTCGTCAGATATGGGGCCATCTACATCTGGAAAAGTGAGTGTAGTTTCCTCTTTGACAAGCTTTTCTGAAAGTAAAGCATCTGAGGCTGGTTATGGACCTGGTGCTAATATTAAATCTAATGACGAATCTCTGATGGAAGATAATGCTGAAGGAGAATTTAGTAAGAGAATTGATCAGAACAGTGCAGTGCTTGCATCAGCTAGTCAAGTAGAAAATAAATCCCGATGTTCCGTAGTAAATGAATTTGAATCTGGGCAAGCTTATAATCTACAAGATGATAAAAGAGATCAAAAGCATAATAGTCTGGAGGAGACAGTTGTTGCACGTTGGGATGATATAGAATTGCCTCCTTCTCAGTCTTTGGAGCTAAAGAATGAGAAGATTGTCAGCATTGGATATGTTGGGGATGAATGGGATGAAGAATATGATACGGGGAAGAGGAAGAAGATAAGGGGCTTGAAGCAAAGCTTTGATGGGCCAAACCTTTTTCAACAAATTGCCACAGAGAAATCTAATTTCAAAAGGGCAAGGTTGGACCAATCTAACTCCACCGAGAAATCTAAGTTCAAAAGGGCAAGGATGGACCACTCAGGGAACCCGCCATTTAGGATATGA

Protein:

Promoter(3k):

>AM01G031750.1
AAGGAAGTTACGGATTTCAATGGCAGGTTGTCACTGGTGATGCTAGCATTAATAGGAAAGTGAGCGTAGACAAAACGCATCTTGTAACGGTAGCCTTTAGTGACGCCGGTGATGAGATTCTCGACGTGACTGAGAGCTGTGCGAATAGCGGCGGAGGTTTTTCGAGATCCAAACCATGCTTCAACCTTCAGCTTCTTCTGACCATCCTCACCGGTGATGAGTTGGAAATCGAGGTTCAAATGCTTGAAGTCACGAACAAGCTTGCCACGTGGACCTTCGACTTCGATGATCTTCGCGTGTACCTTGATGGTTACCCCTTCCGGGATGTCCATCGTCTCCGATGACAAAATAGTCTTCATCTCTCTGTCTCTCGCTCTCTCTGCACGCGCACAAACGCGGTTTTTCTAGTTGATTTGAGAACATTGTATTGTATAGTTTTTTTTTATCTTTTTTCAATCTATTTTGATACTTATCATAAAAAAAAATCTATTTTGATACTTGTTGTTCAGTTTAAATTACATAAAAAAAATCTATTTTGATACTTGTTGTTCAGTTTAAATTATATTTAATTTAAAATAAAAGTATAACTTTGGATTTGGTTTTTAAGATGCTTTTTGTGCTAATACTAATTTACCTTTTTAAAAGAATTTGAGGTTATTTATTTTTTACACTGTACCTACTTTTTAAAATCTCATTCGGTATAAAATATAAAAGAGCAAATAAGGAAATGATAATTGTTGTATGTGCAATTAATTTAATCAAATTTTAAATTATTGACTTGTCATTAAAGTATTGCCAAAAAAAAAACAAGATTTCAAATAAAATGCTAATTAACCAACAAATTGTATCCAACAATCAATTTAATCAAATTTTAAAATATTGACTTATCATAAAAATATTATCATTTGCTTCAAAAAAAATAAAAGTATTATCAAAATAAAAAAACCAAGTTTCAAATAAATCGTAATTAACCAACAAATCGTATCCACGATAGCATCCTCATTTAATATAACAAAAAACAAAAGTTCCATCGTTTGAGTGGACAAATTTACATACATTTCCATTCATATGCTTTCGACATTTTCAAAATTTTTTTTACTAGAAGGATATTCATTCAAACTGATAGATTACATCGATAATAATACAAATTCAGCATTGCTAATAACATAAATAATGTATCTACGAATAAACTCACAACACCCAAGTCAATAGCATAATACAACAAAATGCCTACAAATATGACAAAATAAATTCACCGGAGCATCCATGCCTGCAGATTTGTAACCTTGAGGCCCTAGTCATTGGTTGAATTTGCAATTGATCGAAGTTGATTTGTCGATCTGAACCAAATGAACACCGCAACAAGACAGCAAATCAAAAACACCGCACCAAGACGAGAACAACAATAACGCCGCACTCAGACGACGAAATCAAGAAAAAATATGAAATAAAAGTTAGATCCATTTGGTAACCACTTATTTAAATAAAAAAAGACAAGAAAGACAATCTAAAGGGATGATTCCAGGTAAAAAACCGACCTAAAACCACCTCTTCTAGTGGGTGAGCAAGGAGGAAGAGAAGAATTAAGCAAAACCAGAGCAAGAAGAAGAACAAGAAAATGAAAGAATGGGAGAAGAATAGAACTATTGTATTGTACTCTTCAAGATGCGTAACAAATACAGGTGTTGGTAGGAGGCAATCTTATCAATGTGATAAGCTATCATATTATAGCAAATTTTTCCAAATGGAACTAAAGAAATGTACATCACGGTGCTAGAATCAAGGAAAATCTAGTGGTGCTCTGAGTTCCATGAGAGGCGACGGTGGTGGACACCTGCAAGACACTCTAATACTAAAGTTAGGGAATACTCAAAGGGAATCATATGAGAGGGAATGAATTTGTGTTTTTTTATATACATTTGTTATAAACATGTCGCTAGTTTGTGTTTTTCTACTATGCTTTATGCATGTATTTGAAGGATTTTTTTCCCGACAAATGAAGGACTTCTTAATTATATTAATGAGTTCTTTATTTATAACAAAAGGATAACTTTGATTTGTTTTTTTGAGTAATTTTTGTGGTAATACTAATGTATTTTTTTATTAATTTAATTTGAGGATATGGTTTTATTATTGTTTTTGTATTTTTATTTATTTATTTTGACACTCCATTCTCAGTTCAAATTCAATTTAAAATGAAAGGATACTTTTTTTTTGGTTCGGACCATCGATAGCTACCTACAGAGTGTCCCAACGCATTCATTGAAAGACTAATCTCTGCTCGTGTTTAGGATCAAATTTCGCACTGGCCAACACCGAGTTTGTCCACAGGAATCGAACCCGGGAGCACCGGGTCGACCTTGTGTCCTAAGGTAGATTAAACCACTAATTTGAGATTGGTTATTAGGATAACTTTTGTGCAAATACTAATTTATATTTTTGAAATAATGTAAGGATATTGGATTTTATATTAAAATTTCTTTTTAAAATCACCCGATAAAGAGGCAATAAATTTGATATGCGAAATCAACTTTAATTGAATTTAAAAAATTTCACTTAATACAAAGTATTTTGAAAATCAAATAAAGTCAAACATTTAAATAAAATGATAATGAGGATATAGAGAGATAGAGAATGGATGAGATCGGTTAGTAGGATACTTTTGGAATTTTGAGTGGTGGACACAAGATCCTGAATTGAGCAGCCCATTTATTCCATGGGCCACCTAAAGATGATGGGCCCAGACCCGGGTCTTGCCCGTCAGTTAAAGAGAGAGAAAGCCACATCATACGACCCAAAAAAAAAAACTACAGCATAGGTGTTGTTGCATTACTGGCACAGTGTAGTGTAGGGTTTAATAGCGGCCGCTTTCCATTACTTCTCTCTTTCAGGAACCAGCCGCCAAACCCTCAGCTTGTCTTCTCTTCTAATGCTCTGCTTCTCATCGTTTCCACTTTCCACTATCTATTCTCAAATCGAAGGTTCTTTTTGACTTCACAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00443.32	UCH	91	391	9.50E-58
PF13423.9	UCH_1	90	373	8.20E-18

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0004843	cysteine-type deubiquitinase activity	Molecular Function
GO:0016579	protein deubiquitination	Biological Process
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0006508	proteolysis	Biological Process

InterPro

InterPro term	Description
IPR018200	Ubiquitin specific protease, conserved site
IPR028889	Ubiquitin specific protease domain
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily

trEMBL

trEMBL term	Description
A0A8B8JDI0	_

SwissProt

SwissProt term	Description
UBP23_ARATH	Ubiquitin carboxyl-terminal hydrolase 23

KEGG

KO	Description	Enzyme
K11855	ubiquitin carboxyl-terminal hydrolase 36/42	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G57990	ubiquitin-specific protease 23
Medicago sativa L.	MsG0880047598.01.T01	_
Oryza sativa L.	LOC_Os06g08530.1	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Cucumis sativus L.	Csa013834	_
Glycyrrhiza uralensis Fisch.	Glyur000063s00005895.1	_
Codonopsis lanceolata	Cl_chr07_06510T	_
Arachis hypogaea L.	AH11G34060.1	Ubiquitin carboxyl-terminal hydrolase 23 like

Expression pattern