Gene detail

Detail information of Am01G030930.1 Annotation

Gene ID	Annotation
Am01G030930.1	cullin 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G030930.1	mRNA	Chr01	181907330	181911356	+

Sequences

CDS:

>Am01G030930.1
ATGTCAATGCGTGAGCGTAATAAGCTTATCAGCCTAGAACTAGAAGAAGGATTGGATGTTTTGCAGAAGGGCATCACGAAAATTCTAGAAGGCTTGCCGGAACCTCAGTTCAGTTCTAATGACTACATGATGCTGTATACGACAGTATACAATATATGCATTCAAAGTCAAAGGCCTCCTTTCAACGATGCCCGACAACTGTATGACAAATATAAGGCAACATTTGATGTGTACATCGCATCAACGGTCTTACCATCTTTGCGGGAAAAGAAAGATGAAATTTTGGTGAGAGAACTGCTCATAAGATGGTCAAATCACAAAATTATGACCAAGTGCCTCTTAAAATTTTTTCGTTTTCTTGACAAATTCAACATCCCAAGATGGGGAGTTCCTTCTCTTGAAGAAACCAGCTTCTTATCCTTCTATTACCTGGTATACGAAGAGATGAATAAACAAGTTTTGGATGCTATATTAGTTATGATCGATCGGAAATGTGCAGGAGAGAAGATTGATCAAACATTGGGTATTAACGCATTGGATTTCTACTTCGAGTTTGAAGAAATTACAAGAAAAAACAATGCAAAGGTGATCTCGGTAAAATCAGTTCTTATTGCTCTGATGGGGATGTGTTTTGAAGTTGACTTTGGTGTGGCACTTATGTCAAAAACATTCGAGGACATTGTCGAGACCATTCCTGTTGGTGATGTTGATAGCATTTCTGTCTCTTTAGCGAGTAGTAAAATCTTGAAAAAGATCATTGAATACTGCAAGAAGCACAGCAGCGCACAAAAGGATGTTGATCTCAGAGATTGGGATGTTCAATTTGTCGATGTTGACCTTGAAACTCTGTTTGAGCTTCAAACTTCTGCAAGTTCTTTGAAAATCGACAGTCTCAAGGAACTGGTAACAATAAAGTATTTGCTTGATGAAAGGCAAGACACTAGAGGAAATGGTTCAGGTCTTCCTAAGAGGAAAACCAGAAGAACTGGCAGTACTTGA

Protein:

Promoter(3k):

>AM01G030930.1
CAATAATTTAATTTATCAGTCATGTTCTATATATGATTCTCTCCGACATTGCCGTGCAATTCTCCTATAGTCTTTTGTTGATGAATCATGTTATATACAATTTTCTGAAAGTACCAAAACAATAATTATTTTGGTAAGTGTCATACAATTTATGCAACGTTCAAAATGAGTGCAGTAAATTTATTTTGATATAATCCACATTGTTCATCGAAAAAGATCTCATTTATTATTAGGTTGAAACATTACAGTAAAATCACAGGCCCGTCAACATTATGTTATACAAGTCATGCATTATATATAATCATTTTCCACCTCATGCTTCAAGGGGGAACTATATAATGTCGCATGAATTGGACTCTTTTCTGACTCATTTATGATTCATGACTATAATTGATAATATAAAATTTTTATCCATATTAGTGATAACTCTATTTTATATAGAGTTATTTAAGCATCTAAACATAACTCAATAGCAATAACATTGGATAGAACATTATCCCCATCCTTCATAGTAGAAATTCTTTTAGTGGCATTTTTAATCTTAGTCATTCTATGAAAAAAGGCAGTATTTCTATCCCAAGGTTGTGTCGGTTAACTCTAGATTTCTCCTTCTAATAAGATTCTTCATAATTTAAAGCCATCTACAAATTAATTTGAGCCTCCTTCTCGAGAGAGAGTAAAGAGTCAGAACCTCCTTGATTATTAATCTGCTCCTGGATATTATCAAGCTTGGCTAAAGCTTCATTAACGTTATCGAAAACATTACCGAAAACAATAGTATTCCAGTCTTTAAGCTTAATCTTCAAGTTTTTCAACTTATGGGATAAAACATGCATGTGACAACCAACAACCGGAGTTTGCCAAGCCTCAAAGACCCTCTTACAATTAGGGTGTTGAGCCCACATTTTCATAAACTTGAAAGAAGAGCGCTTCTGAGAAGTCTCCTTTTTCATAAGCAAGAGCAGAGGAAAATGATCAAACATACTTCTGGTAAGAGTACAACAGTCCACACTGTCCCAAAAATTGAGTCAGACCTCATTACAAATGGATCTATCAAGTCTCTTCTCAGTATAATTATTTCCAAGCCTACCAAGTCTATTCTATTTTCCTTCCTTTGTGTTTTCAATAATTTGAACATGAATATCACCATAGTTTGTATAATTTTGCTAATGCTCAACATGAGGTAAAACTCTCTTAGTTGGGATGCTATAATCTTTGTAATGATCTTTTAATGGTTTAATGTTATATACTGGTGTTTGCATTTTAGTTCTTGTGCTAAACTTCTTTCAAAGTCATTTTGGGATTAGCCAACTGAGATGGTTATAGTCATGAATACAGACATGGTTTATGATTAGAACTCAATAACTAATATGGGTAAGAGTTTAATAAAGGAAACTTTGTTATTCAATGCTTAAATCTAGACATAGGAAAGTATAGTCCACGGGGTGAGATTGTGGGTACTTCATATACAAGGTTGAACTGACGTCAGTGACTGAAAAACGCACATCAATTGATACAACATCCAGTGCTACAACATCGTATATAGCATTATTCTGTTTTAAGGGATTTACTTAGTAAAAAGCATTCCAACTATCTTCTCACTTGACCTTCACTACTATCTTTACTAAGCTTGTTTAATTTATGCTACTTTACATTATTGAAATCAAAATATTTGTTACTTGGTTACTTCTCATTAGTTAAACTACTATTTTAAACTTTGAAATTAATATCAATCTATGTGGGTACGATCTCTACTTTTTCACTATATTACTTGTTATGATTGTGTATACTTGCACAACACCTTTCCACACAACAAAAACCTCCTTTCATCCAATATTAAAATGTAAGTCAATGCTGCTTATGTGTCCAAGTGACACAAATCTCATTTTTTGTCCAATTGAGTCCCTCATTAAACTTTTTTGGAATGTTAAAAAATGAGACATTTTAGTCCTTGTATTTTGGGTACAAGTTAGTCCTTTTTCTCTAATATTCTAGAAAAATAGTTTCTAGAATGTGGCAAATCTATTTTGTTCAATCTAGTTTAGGTCATTTTTCGTTGTGCTATATACTTAAAAAAACCTGCAGAATCGAACGCTCGAACCAAAACACCATGTGACCAAATATATTGGATGACTATTTTAAAACCACAAATTATTATTTGCTTAGACTTTTTACCTTTGGAATTTTTTATTAAATTATTATATTTTCAAAGCTTGGATTAGATGAATATTATTAAATTTGAGTTTGATTCAGTGCATTTTATACATTTTTGAACTTTTTAACTATTTAATAGTGTGAGTAAGTACGTGGCAAGGGGTTGCTCTCTTATTCACTTATTCTGTTTTTTGTGATAAAGGGTTCTCATAGGTGTTTTTTGTTAGTCATTTCGATTCTCAAATGTGTTTTTTATCAAATTAGTCCCTAAAATAAAAGGACGTGTTTGTAATTTTGGCACATTCAAAGATTAAAACACTTAAATATGTTTTTAGTCCTTGTAAATATAAGATCATTTGATTTTAGTCCCTCTAATTTATTTTTTTAATAACTCCCCCCAATTTTTTTTTGATATTAGTCATTCTATTAAGTCTCTATCGGTGGTTTGCTGAGTTGTATAAAGGGACATCCATTTGGCTTTACCAAATCATTACTTTTAATTTTTTTTTGACCAAAAATTTTCTTTTGCTTTTAAAAATGGTGGCATGAATAAATTGATGAATTACCAAACTAATTAGGGTTTGTTCTGCTGCACTCTCCACTGTTTTCTCGCTCTCTGGCCGGTCTTTCACTCACCACGGTTCTCTCTCTCAAATAAAAAAAAAGTAGAGAAGAACAAGAATGAAGTCCTTCACTCTTCCTCTCTCCCTTTTCTATTTTAATCTTTGAACCCCACTGTAGTTTTTTGTTTTTCACATATGTGAATCTTCCTTTTGATTCAGTCATAACCTACCCTATTTGAAAACTCTTGCTTGCAGATTTTGGTATTTTTCTTAACTTCCCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00888.25	Cullin	19	187	1.80E-19
PF03931.18	Skp1_POZ	210	260	1.60E-10

Gene family

Gene family	Subfamily
Ubiquitin Family	Cullin
Ubiquitin Family	Skp1

Gene Ontology

GO term	Description	Category
GO:0031625	ubiquitin protein ligase binding	Molecular Function
GO:0031461	cullin-RING ubiquitin ligase complex	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process

InterPro

InterPro term	Description
IPR001232	S-phase kinase-associated protein 1-like
IPR036296	SKP1-like, dimerisation domain superfamily
IPR011333	SKP1/BTB/POZ domain superfamily
IPR016073	SKP1 component, POZ domain
IPR001373	Cullin, N-terminal
IPR016159	Cullin repeat-like-containing domain superfamily
IPR045093	Cullin

trEMBL

trEMBL term	Description
A0A396IMV4	_

SwissProt

SwissProt term	Description
CUL1_ORYSJ	Cullin-1

KEGG

KO	Description	Enzyme
K03094	S-phase kinase-associated protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G02570	cullin 1
Medicago sativa L.	MsG0880047636.01.T01	_
Oryza sativa L.	LOC_Os01g27150.2	cullin, putative, expressed
Cucumis sativus L.	Csa011709	_
Glycyrrhiza uralensis Fisch.	Glyur000055s00004534.1	_
Codonopsis lanceolata	Cl_chr06_40090T	_
Arachis hypogaea L.	AH11G30320.1	Cullin-1 like

Expression pattern