Gene detail

Detail information of Am01G030060.1 Annotation

Gene ID	Annotation
Am01G030060.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G030060.1	mRNA	Chr01	178400132	178403114	+

Sequences

CDS:

>Am01G030060.1
ATGGCATGGCCTGATTCTTCAACTACTCACAAACCAGTACGCCAATCTCGACCCCTTTACGTTCCTCAGTATCGCTCTCACACTAACAACAATCCCTTTCCACCTTACGGCAATCAACCCTTTTTCCCTCCATCTGATGATTCAACTCATCACTTCCTCAACCGTTCCGCTCCTCCTAGGCCACGTGGCCGCGGTGGTCCTGGTCCAGGTCCCGGTCACAATCCCAATCCCAATCCTGTCCGCCGTTTGCCTCGTCATGAAGAACCTCGCCGTAACCACCGATCTCCGTTCGAAACCAACGGCGAAGAAGAAAACGGCGTTGTGAATTTTGAGGCGTACGAATCGGTTCCCGTTGAGGTGAGTGGTGAGAATGTTCCATCGCCGGTGAATGCTTTTGCGGAAACAGATTTGGATGAGGAATTGAAAAAGAATATCGAGCGATGTAAGTACGTGAAACCTACGCCGGTTCAACGTTACGCGATCCCCATTGCTGTTGCAGGACGCGACCTCATGGCTTGTGCGCAGACTGGTTCCGGTAAAACGGCGGCGTTTTGTTTCCCTATTATATCTGGGATTTTGAAAGGTCGTTTGGATCCCGAGTTGTCGTCTGGAACACGTGGTTCAACTGTTGCTTATCCCACCGCACTTATCTTGTCTCCTACTCGCGAGTTATCGTGCCAGATACATGCTGAAGCGACCAAGTTTGCATATCAAACAGGAGTTAAGGTTACTGTTGCTTATGGGGGTGCTCCCATTGGTCACCAGCTTCGCAATCTGGAAAGAGGTGTTGATATTTTGGTTGCAACTCCTGGTCGTTTGGTTGATATGATTGAGAGAGAAAGGGTTTCGTTAGCGAAGATCAAATTCCTTGCATTGGATGAGGCTGATCGTATGTTAGACATGGGTTTTGAGCATCAAATACGCAAAATTGTCGAGCAGATGCACATGCCTAAGCCTGGTGTTAGACAGACACTGCTTTTCAGTGCTACTTTCCCAGATGATATACAGAAACTTGCGTCTGATTTTTTATCCAGCTACGTGTTCCTAACTGTTGGAAAGGTCGGTTCCAGCACTGAGTTAATTGTACAGAAAATTGAACTTGTACAGGATATGGAGAAAAGAAGCCTTCTTATGGATCTTCTTCGACGCAACGGAGCCAATGGCAAGCATGCTTTAACTCTTGTATTTGTTGAAACGAAGAAAGGAGCAGATGCTTTAGAAAACTGGCTGTCCAGAAATGGGTTTCCAGCAATTGCAATTCATGGTGACAAGGTTCAAATGGAGCGGGAACGAGCGTTGAAATCATTTAAACGTGGTTTTACTCCAATATTGGTTGCCACAGATGTTGCTTCTCGAGGCTTGGATATCCCTCACGTGGCTCATGTTATCAACTTTGATTTTCCTAGAGACATAGATGACTATGTACATAGGATTGGCAGAACAGGCCGTGCAGGAAAATCTGGTTTAGCAACTGCTTTCTTCAGCAGTAAGAATATCCCTCTTGCAAAGGCACTTGTTGGACTTCTCCAGGAAGCAAACCAAGAAGTTCCCCCTTGGCTCAACCAATATGCCGAGTCTTCATCTTCGAGTGGACGAAGCCAAGGACCTCAGCGGCACTGGAGAGGCAATGGCAACTATGGTGGTCGTGATTTCCGTAATGTCTTCGAACCCGAGGGTGAGAGTTTCCACTACAATGGTACTTACAACAATTATGGAAGTCGTGAACCTGAGGTCGAAAATTACCACAACAACTACAGCAACAGCTACAGCAATGCAAACCATGCCGTGGACTCTTATACTGATACTTCTTTTGACATCAATAACTCTAACAATGGTTCATCTTTTGACAACACGAATACAGCTTTTGCTGGCAGTTATAATAGTGGTGCTGATAATTGTGATGTGGTGGGGAAAGATGGGCCATGTGGTTATGCATCCGTCGTTCCCACTGGATGGGACTAG

Protein:

Promoter(3k):

>AM01G030060.1
TTGTCTTGTTTTTTACTTGGAGTTGGGACCAGAGAGGTAGTATTGCTTATGATATTTTTCTCTTATTATATAAAAGCCAAGGAGTACCAGTCAAGTAGTTCTGGTAGTGATCAATTGCAGTTAGTAAATACTCAACGGTAATTTTATGCATCACAGAACGTCATTATGTACACATTGTCTCAAGAAAAAGTGTGGTTTAAATTTAATCAATATCATAGCAGAGTAGCTGATTTGTCTCCAACTTTTTTAATTATAGAGAGAAACAGAGATTGGGGCCTTTTTAGTTACGTAATGTAATTGGAATTATTGCATCTAATGGGAATAGAAAAAGGATATAAGTCTATTTAATGGTCAAGGAGGTTAAAAGAATATACCATGTGACAAGGAGCATCCAGCTGGAAAGTATTTCATGCAAAAGGTTACATGAAATCCAAGTGATGTGGAAAAGTATGGCACACTAGAAAATAAGCGTATCTTTGGAAATAAGATATTGTGATGCCACTCATATGCCATTACTTAGGAGTTAAGATATAGGATCCAATTGAAGTAGTTTTGCAGATTTTGGAAAATGAAAAATGCTTGAATTCCTTTAAAGCATTAGTTAAAAATGCTTGAATTCCTTTGTGCATGATTATCAGTAAGAGATCACGCCAATTAACACACAAAAAAAATGAAAAATGCTTGAATTCCTTTAAAGCATTAGTTAAAAATCTCTTTTTTTTTGTCTCAAATTCTAGTACCCATATTTATTTTTGGACCGACAAATGGCTTTCTAAGCCGCTCTCCTTGATTTTTAATTTTCCTTCGAAGGTTCAAAAGTTGTTGACTTCGAAGGTCAGTGATTATATCATTGACTTCAACTGGCATCTCCCTGCGGAGCTTCAACTTTGGTGCCTGACAAGGGTTTCGACCTAGTCTCCCCTTGGTCTTTCTTGTACTCCTTTTTATTTCTTTTTAATAATAAATTGAGGTAGAGTACTCTTTTTCCTTTTGATGATTTATCCCTAAGGTGGGTTTGCATCAAAAAGTTTTAGTGAGGCTCTTTCCTTTAACAAAAAAAAGTTCCTTTTACAAGCAGCTATATATCCATGATGAAACTCACTCTTTTCTTTGAGTTGTTTGATAATTTCTATGCAGAGCACCACAACTTGTATTGGTTACAATAAAAAGAACAAAGGATATCCCACGTCCAAAAAAAGAGAAGAACAAAGGATATCCTTCAGGAGTGAAAATTTGTCTAAGACTCAAAATGCTCAATGAAACCCTAAGAGCCCCATGGGAACTTTGATGCCACACCATGTTGGCCCAAGTCGAAGCTCAGCTTCCTCAAATGGAGTGTTTGGAACCGCTGCAGAAATCGTCCAAACGTACGACAAGTGTAAAGTTACTGAAAGAAGCTTTTAGTTAGACGTGGATATTGGATGCGGAAAAGTAGACATCCAAACGCACACTCAGATTATGCTCCCTTTCCAAATGAGTCTAGATCTGGTGTTGGTCTTTGCTTTAGGGACTCCTCAGGTGGATTTATCTTAGCCTAAACATCCTGGTTGTCTTTTGGGGCGCTCTCCTTGGAGGGGGAAGCCTCGTCGCTTCTCATTTCTATTGAGCTAGCTCATGATAGGGTGTTTGAACCGAATTGCAAGGTTGTGTTTGGTTCTCTAAAGCATAACATAGCTTACAATAATGAGTTAGGGGGCATTTTGCTCGTTGTATAACTATTTCATCTTTGGATGTCAGTTTTGAAGTAGTTTTTATTCGGAGACATGAAATAGGGTCGTCTTTAGCTCAAACGTCTATATTGAAAACTAGCCTCCATAATCATTATGTTAGCCCTAAACATAATTATTGTCAAACATGTATTGTGTAGCATAAAACAATGAAGCACAGTTATTTTTGAAATCTAATTGTGTTAGTCCTTATTTTTACTCTTATTATTTTAATTAAATTTTTCATTTATCCTTTATTAAATAGATTTTCTCTATAATTTTGAAGTATTAATTATAAATAACTATTTATGTCATTTTATATTTATAAGCTAGTTTAATTGCTAATTTTACTAAACACTTTAAATTCTATTCGTTAGCTTATCTACTATAAATTTATCCGCTATTCGCTATCGGATTTTTTTTACCAAACATATTTGAAGCCAATTGTTTGACCCCCTGATTAAAATTATTTGATTTGTTGAATAAAAACGAGATACAAGAGTCACATTCAATATAAGTATGTTCTCACTTTTTAATTCAGTAAAATAAGGAAGACTTAATCTATTTTTTCAAGTCGTATATTAAATCCTCCTTCCGTTCATTTTTGCCCTATTTTAAAATTATTAAATGTTAAATATTGTTTATTTATAATAGTATTAAACGAATCAGTTGTTTCCAATGCCTTTTTTGATTAAACAAGTGTTTCCAATGCTATTCACTGATGCTTTATTTTTTCATTCGTAGCTTGTTATTGTTGTGTTGTTAGTTGGGTGTGAACTGAATAGAAGCAAGCAGCGATTGGTTTTCTCTAAACTAAACTAAACAGGTAAAAAGTAAGTGTAATCGAGCAAGATCCAAAACGAAGAGTGAGTGAGAGGCACGCGTTGGAGTGGTGATTGGGACTGAGTCGGGTTGGTAGTACACGAACATTAAATTCACATTCAGGCCCTGCAAATACCCTATTACCCTCTACTCTACCTGTCTACTCCTCTCTCCGCAACAGCTTTGTGCCGAACCCCTATTCGCCACGTGTCAAAAGGGGGCCCCACATTGAAAAAGATATTTCACGTGAGCAGAGTGAGCAAGTGAGCGAGCAACGATCCTTCTTTTTTTTTTTTTGAGATTAGCAACGATCCTTCTCCTACACGATCCCTCTTCTTCAAAACCACTACACCACCTTTTCCCCTTCCTATTCAACCGGAGAGAGCATATAAACACTCTCTCAAACGCATTTCCCGACTAACCTAAAAACCGTTTTCTTTGTTACGCGTAAGAAAACCAAAGCACTATCACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	154	338	9.40E-49
PF00271.34	Helicase_C	375	485	4.10E-30

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0070013	intracellular organelle lumen	Cellular Component
GO:0016787	hydrolase activity	Molecular Function
GO:0001055	RNA polymerase II activity	Molecular Function
GO:0046983	protein dimerization activity	Molecular Function
GO:0003677	DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR044763	Ded1/Dbp1, DEAD-box helicase domain
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A3Q7XV84	_

SwissProt

SwissProt term	Description
RH52B_ORYSJ	DEAD-box ATP-dependent RNA helicase 52B

KEGG

KO	Description	Enzyme
K11594	ATP-dependent RNA helicase DDX3X	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G58570	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0880046758.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa010320	_
Glycyrrhiza uralensis Fisch.	Glyur000316s00018286.1	_
Codonopsis lanceolata	Cl_chr08_36640T	_
Arachis hypogaea L.	AH20G03630.1	DEAD-box ATP-dependent RNA helicase 52B like

Expression pattern