Gene detail

Detail information of Am01G029470.1 Annotation

Gene ID	Annotation
Am01G029470.1	TBP-associated factor 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G029470.1	mRNA	Chr01	176689038	176706898	+

Sequences

CDS:

>Am01G029470.1
ATGGCGAAGCCTCGCAAGCCCAAGAACGAAGACCCTAAGCCCGAAAACTCAGCTCCCGTAGTTCACCACCAAAAGCTATGCCTCTCCATCGACATGGACAAACGTTTAGTCTACGGGTATACTGAATTGGAAATTGCGGTGCCGGAAATTGGGATCGTTGGGCTACACGCAGAGAATCTAGGGATTGGAAGTGTTTGGGTTGATGGCGAGCCTACGGAGTTTGAATATTACCCTCATCAGCATCAGCAGTTGGAGGATGACAAGAGATGGAGTTCTGTGTCTTCTCCAAGCTCTGCTGCTGATGCTGGTGTGTCAGTGTACTTGTCTTCTTTGGAGAAAGAATTGGTTCCCAATTTACTCATAAATTGCTGCAAACCTTTCAAGACTGAAAGTGAACAGCAGGAACAACCCGTTGCTGAAAATGGGGATCACTCCTCGGCCGAGCCCAAGCCGGTCATAGAACCTAAGCAGAATGTGAGATTAGTTCGAATCGACTATTGGATAGAAAAGACAGAGACAGGAATCCACTTCAGAGATAATGTTCTTCATACTGATAATCAGATAAGGAGGGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTCACAGCAATGCTGCTATGACTTGGAGTTCACTGTAGCACACAATCTTGTGGCTGTCAGTACTGGAAGCTTGCTATATCAGGTTTTAAGCAAGGACAATCCTCCTCGAAAAACATATGTCTATAAATTGGATGTTCCAGTTGCCGCAAGGTGGATATCTTTGGCTGTTGCCCCATTTGAAGTTCTTCCGGATCAACAATTTAGTCTCGTATCACATATGTGTTTGCCTCCTAATCTTGCAAAGTTGCGGCATACAGTGGAATTTTTCCATAGCGCCTTCAGCTGCTATAAGGATTATCTTTCTGTAGACTTCCCATTTGATTCGTATACGCAAGTTTTTGTAGAGCCTGAGATGGCACTTTCATCATTGAGCTTAGGAGCTTCTATGAGTATATTTAGTTCTCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATACAAGGGTAAAACTTGCATACGCCCTTGCAAGACAGTGGTTTGGTGTGTACATCGTTCCCGAGTCACCAAATGATGAGTGGCTCTTGGAAGGGCTTGCTGGTTTCTTGACAGATTTTTTTGTTAAGAAGCAATTGGGTAATAATGAGGCACGGTACCAGAGATACAAGGCAAATTGTGCTGTTTGCAAAGTTGATAATTGTGGAGCAACAGCTTTGAGCTGTTCAGCTTCCTCTAAGGATTTATACGGAACACAGTGCATTGGGTTGTATGGAAAAATAAGAGCATGGAAGTCTGTTGCAGTTCTTCAGATGTTGGAGAAGCAAATGGGTCCTGAATCTTTCCGAAGAATATTGCAAAGTATAGTTTCTCGGGCACAGGATAAAACACGTTCTGTGAAAACCCTCAGTACTAAGGAGTTTCGGCATTTTGCTAATAAAATTGGAAATCTTGAACGTCCATTTCTGAAAGATTTCTTCCCCCGGTGGGTTGGTTCTTGTGGATGCCCTGTTTTAAGGATGGGGTTTTCCTATAACAAACGGAAAAATATGGTTGAATTGGCTGTGTTGCGAGGATGCACAGCATTGCACACTTCAAGTACACCCGTTCTTGATATTAATCCAGATACTGAAAATCGAGATGGAGATACTGGATGGCCTGGTATGATGAGTATCAGGGTGTATGAACTTGATGGTATGTATGACCATCCGATTCTACCAATGGCTGGAGAAGCATGGCAGCTATTGGAAATACAATGCCACTCAAAACTTGCTGCTAGACGCTTTCAGAAACCTAAGAAAGGTTTAAAACTTGATGGCTCTGATGATAATGGTGACGTGCCTTCCATGGATATGCGCTCCAGTACCGAGTCCCCTTTATTATGGATCAGAGCAGATCCTGACATGGAGTACCTTGCTGAGGTTCATTTTAATCAACCAGTTCAGATGTGGATTAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCACCCCAGCTATCATTTTCTGTTGTAAATGCGCTAAACAATTTTCTTACCGACTCCAAGGCTTTCTGGAGAGTAAGAATAGAAGCAGCTTTTGCATTGGCAAATTCAGCATCTGAGGAAGCTGACTTTTCTGGTCTGCTCCATTTGGTGAAATTTTACAAGAGTCGAAGGTTTGATCCTGACATTGGACTCCCAAAGCCAAATGATTTTCATGATTTTGCCGAGTATTTTGTTCTTGAGGCCATTCCACATGCCGTAGCTATGGTCAGAGCTGCCGACAAGAAAAGTCCGAGAGAGGCTATCGAGTTTGTTTTACAGCTGCTGAAGTACAATGACAACACTGGGAATCCGTACTCAGATGTTTTCTGGCTTGCTGCATTGGTCCAGTCAATTGGCGAGCTTGAGTTTGGGCAACAGAGTATTCTCCTCTTGTCATCACTACTCAAACGCATCGATCGACTTCTACAATTTGATAGTCTCATGCCAAGCTACAACGGAATCTTGACTGTCAGTTGTATCCGGACATTGACCCAAATTGCCCTAAAGCTTTCAGGGTTCATTCCTCTTGATCGTGTATATGAACTTGTAAAGCCTTTTCGGGACCTAAAAGCAATTTGGCAAGTTCGAATTGAAGCAAGCAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATTGATAAAGCACTGCTTTTATTTATCAAATATGTAGAGGAGGAGCCTTCGTTAAGAGGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGGATTGAATTCAAATGATGAAATCACAAACCAAACTCTAGTCTCTTTGCTCAGCTTACTGGAAGGGCGTATGGCATTTAATAATGTCTTTCTCCGTCATTACTTGTTCTGCATATTACAAATACTGGCAAAAAGACCCCCAACTCTTCATGGAATTCCCAGAGAAAGTAGAATGTTGCATATGAGTCTTACAGAAGCTTGTAACCATCAGAGGAACATATTTGTTCTTGATTCAGAAAGTAAACCTTTGGAGGTTCCAAGTTCTTCTCAAAACCTAACACAAGATTTGACGATGACAGAGGGTTTGAGGGATGCACTTGATGAAGCTCCCAAGGACCAAGCTTGTGAAGAAGCTCCCAAGGACCAAGCTTGTGAAGCTCCGAAACAAGCACATTTTGAAGCTCTAAATGAAGTGCCCATCGAGACTCCCCTAGAGGGAGTTACAGAATTTCCCTATGAAGCACCAAATGAAGCTCCCAAGGAAATTTCCAAGGAAGCCGATACTGTATCCAATGGCAATGAAAGAAAAAGGCTAATCAAAATCAAGGTTAAACAATCTTCTGCCACCAGTAGGGCAGATACTGATAATCAAATAGTTGAACGTTCCTTGGGTGGTCGTAATGGAACTGATCATGGAGCTAGCAGTTCAGTTTCAGTGGATGCACCTCAGAGGAATTTTGCGGAGACTGTTGTTAGCATTAGTAATCATAATAATATTGAGGAAGTTAATTCTTGGCATGATCATGGTTCTCGCATGACTGCCAGCATTGGTAGTGCAAAATTGGTGAATGATGGTGATGAATTAGTCAAAGAACTCCAATGCACTGCCGATTCAAGTGTAGTTTATTCACAACCTCAGCCAGAAGATCCATCATCATCTAGTATTATCCAGGATAATATTGATGCTGATGCACGGCGGTTTGTTAGCCTTCAAACTCTTTCAGTTCCTAAATTGGATGTTAATGGAGAATCGTTGGGTAAAGATATTTCTGCTCGTGGGAAAGAAAAACACAAAGACAAGGATAAGAAACGGAAACGGGAAAGTCATAAAGGACAGCAAGATGATCCAGAATATTTGGAGCGAAAGCGATTAAAGAAAGAGAAAAAACGCAAGGAGAAAGAATTGGCAAAACTGCTGAGTGGCCAAGCAAAAAGATCCTCTGTAGACTTGTTGTCAAGTAAGAAAGAGGAACCTGAATTGGACGTTGCAAGACAGCAGCTGAAAACTGTTGAACCCAAATCAGCAGAAATCAGAAAGACCGAAACCAAACCCGAAGGTACATCTGGTGCACCCAAAATTCGAATTAAAATTAAAAACCGAACCAGCAAGTCGTAA

Protein:

>Am01G029470.1
MAKPRKPKNEDPKPENSAPVVHHQKLCLSIDMDKRLVYGYTELEIAVPEIGIVGLHAENLGIGSVWVDGEPTEFEYYPHQHQQLEDDKRWSSVSSPSSAADAGVSVYLSSLEKELVPNLLINCCKPFKTESEQQEQPVAENGDHSSAEPKPVIEPKQNVRLVRIDYWIEKTETGIHFRDNVLHTDNQIRRARCWFPCIDDNSQQCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYVYKLDVPVAARWISLAVAPFEVLPDQQFSLVSHMCLPPNLAKLRHTVEFFHSAFSCYKDYLSVDFPFDSYTQVFVEPEMALSSLSLGASMSIFSSQVLFDEKVIDQTIDTRVKLAYALARQWFGVYIVPESPNDEWLLEGLAGFLTDFFVKKQLGNNEARYQRYKANCAVCKVDNCGATALSCSASSKDLYGTQCIGLYGKIRAWKSVAVLQMLEKQMGPESFRRILQSIVSRAQDKTRSVKTLSTKEFRHFANKIGNLERPFLKDFFPRWVGSCGCPVLRMGFSYNKRKNMVELAVLRGCTALHTSSTPVLDINPDTENRDGDTGWPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSKLAARRFQKPKKGLKLDGSDDNGDVPSMDMRSSTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSVVNALNNFLTDSKAFWRVRIEAAFALANSASEEADFSGLLHLVKFYKSRRFDPDIGLPKPNDFHDFAEYFVLEAIPHAVAMVRAADKKSPREAIEFVLQLLKYNDNTGNPYSDVFWLAALVQSIGELEFGQQSILLLSSLLKRIDRLLQFDSLMPSYNGILTVSCIRTLTQIALKLSGFIPLDRVYELVKPFRDLKAIWQVRIEASRALLDLEFHCKGIDKALLLFIKYVEEEPSLRGQLKLATHVMRLCQMRDGLNSNDEITNQTLVSLLSLLEGRMAFNNVFLRHYLFCILQILAKRPPTLHGIPRESRMLHMSLTEACNHQRNIFVLDSESKPLEVPSSSQNLTQDLTMTEGLRDALDEAPKDQACEEAPKDQACEAPKQAHFEALNEVPIETPLEGVTEFPYEAPNEAPKEISKEADTVSNGNERKRLIKIKVKQSSATSRADTDNQIVERSLGGRNGTDHGASSSVSVDAPQRNFAETVVSISNHNNIEEVNSWHDHGSRMTASIGSAKLVNDGDELVKELQCTADSSVVYSQPQPEDPSSSSIIQDNIDADARRFVSLQTLSVPKLDVNGESLGKDISARGKEKHKDKDKKRKRESHKGQQDDPEYLERKRLKKEKKRKEKELAKLLSGQAKRSSVDLLSSKKEEPELDVARQQLKTVEPKSAEIRKTETKPEGTSGAPKIRIKIKNRTSKS*

Promoter(3k):

>AM01G029470.1
CAAGATCACAAAAGCTTCGCGAGGAGAACTCATTTTGCGGCATTAACATATAGAACCAAGGCTCATCACTTTCATCATTTCCTTTTTTGTCTTCAACTTCCCCCACGTTACCTCTCAAAAGACGACCACATTGATAATCGGGAAGATCTAGCGTATCATACAGTGGAAACACAAGATCAAATGTTGTTTTACTGGCTTCAAACATCCATAACCACAACGATTTAATCTCGCGTTGTAGGCCGTGTTCATACCTTTGAACTATGGGACAAGATCTTTACTTACTTTCGGAAAATCGGACGCACAAAGGTACGTGAACTACACATGGTGAAACTTAAAGGACGTACTACGAAGGAATATCGTGCGAATATCGAGATTCTCGTTGATTCTCTTGACTCTGTTGGAGATCTAGTTACGGCTCAAGATCACGTCAATGTGACACTAGATGGATTGCCCGTAGGACTATGATCCTATAGTCTCAATCATTCAAAGTAAGCTTCATGAATCTGTGTTAGTTGATGAGGCTGAAGCCCTGATTCTAACTCAAGAGGTTAATTATTTCTCATAAAATATTAAAACAAGTAGCTTTAAAAGTTTCAAAAGGACACTAACTATTGTCCAAATATTAGCAGTTATTTTGGAAGACACGACTCCATAACTTCAAATTGGTGATACGATGAAGGAAACTAACCAACAACATGAAGAGGAAATAGAGAAGAGAAATATAAATTTTAAAAAACAAATTACAATCCTTTTTTTTATCAAAACAAATTACATTCCTACAAATACATTAAAGTAGTTTTTAAATAAGAATATTTGAGTTGTTAGTCCAAGTGAAAAAGGTGTAAACCCCTAACTTACTTTCTCTAAAATTAAGTGGGAGTAAGTTAGGAATCCCCACACATAAAACGACATCGATGGTTGACACCATTTTAACACTAATACATGCAATTGCGCGCGCATGTTATATATATAACATTTTTTTTGGCACATGACATTTTCTTTAGAAATGCGAAAAAAAGACGTTACGACTTTAAATTGTTACATACCTTTTCTAATAAAAATACCTTTTAAGTCATACCCTTCTCGAAATAACTCTTTATTTTCGGGCTCAATATCTACACTCAACAAGATGTAATAAAGATTTTCGTTAATTCCCTTAACCCTAAAATCTTATAGCATTGATATAGATTTTGTGAGTCACAAGATCAAAAATTTATTGTAGTGAGATACTTAAACATGAGAATCTTGAAGTTGTTCCTTCCTATCTTCAACTCGATCACAGACGAACACCGCTATTTTAGTCTTGCAAAAGGGTTTATGTCCCCTGCTTCCAACTCATCCCATCTTCCTCTACACACTCTATCTTTCATGAATAGTTTTCTTTTCTCTTATTTTTCTTTCACTCTCTCTTTTACATGTTATTTGATGTATGTGAGAGGGGAGAAATGATATTTTGTACGAAACGAAACATCAGAATAGTTATCTCAACCCTAAAACTACACAACTCGATTTGAATTGTTATTATTTCCTTTTGTATTTCTCACATTTCGTACCAAATATAATAACTGATGTGAGAGATAGATAATAAAGAGAGGTCAGAAAAAGAGAATCCAAGTTGGTTTGTCCATTGGATTCTTCTCAACATTATTTAATAAAAAATATTAATATTAACCGTCATCTTTATATATACATCCAAGGGGTGTATGACATAATCAATGAGGTGGGCACTCCACCCCATTTTGGCGCCAACATTCCCCCTCACTCCCCACTTTGGCACCAAACCCCCCCCCCCCCTCTTTTTTTTTCTTCTCATTTTTTATATTTTCATTTTTTAATTTAAATTTAAGAAAAAAATTTAGATCTATAAATAGTCGAAGTTTGTTCCTCAATAATCGGATTGGTGAAAAATGAAAATTAATTTACCGATAAATTATGTAAAGTGTGATCCTAGCCACTGTGTTTTAAGGTAATTTAGAGTCTAAAAAAAGTAGTTGTTCAAAGGAAATAGTAATGCAAAACAGTGTGTTTTGGGGTTCTTAAGCGGTCGGAAAAAATTAACTGTTCAAATATGCAGAGTTTGTTCCTTAGTAACCTGTTTGTTGAAAAAAAGGTAATGTGATAATGACTTACTTGATTATCATTTGTTGTCTATATTTTAATGGACCAATTTCATTTCTGTCACTAACTAGTTTCTTTTCATTCTATACAACATTCGTAATTTTATATTTTAATGGTACTTTATGGTTCACTAGAAATTTTAACTGTTCAAATAGCGGAAATTGATTCCTCCGTAATCAGATTAGTGAAAATGAAAATTAATTTTGCAACAAATATGTTCTACCTTATAGTTTTCTCTTATTGGCTAAACATAACTTAGTTGTTAAAATTTGACTTCAATTACTATTAATCTAATTTTGGTCTTATAATACTTCAGTAGACCCTAAAACTTTGGCCCCGTGCATCGCACGTCACAGCGCTAGTAAATATAATTTTGGTAAGTTTTTCTTAAGAGTAATGTTATTTAACCAAAATATTCTAACAAAAAATAGCCAAAAACCAAATTACAACACTAATTAACCAAGTTTTATAGGCCATTAACCAACTTGCTTTTTCACAGTTTTTAGTCAATAGCCTAAAAACTGTAAAAAAACAGGTTAGTTAATGGCTTATAAAACTCGATTAATTAATATTATAACTTAATTTTTTGGCTATTTTTATGGGAAACATTTTCGCTAAATAACATTATTCATTTATTCTTAAAGAAACCAAGCCTTGAAAAATCTATTTGGCAAAAGTAGGGCACAGAGAGGCAAAGATGACATTAAAAGGGGCACAACAATATCGTCATCGCCCTCCTTAGGCACGATCATCCTCTATAAATAACACAGCATCACTCTACCAATCTTGCACAAAAACACACACAGAAAGGAAGAGAAGTAGAGAGCGCGAGAAATAGAGAGAGAAGAAGAAGAAGCTTCGATTTAGTTTTCTTGTTTTCTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01433.23	Peptidase_M1	288	485	1.50E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0000976	transcription cis-regulatory region binding	Molecular Function
GO:0006413	translational initiation	Biological Process
GO:0003743	translation initiation factor activity	Molecular Function
GO:0004177	aminopeptidase activity	Molecular Function

InterPro

InterPro term	Description
IPR037813	Transcription initiation factor TFIID subunit 2
IPR027268	Peptidase M4/M1, CTD superfamily
IPR014782	Peptidase M1, membrane alanine aminopeptidase
IPR016024	Armadillo-type fold
IPR042097	Aminopeptidase N-like , N-terminal domain superfamliy

trEMBL

trEMBL term	Description
A0A1S2YR18	_

SwissProt

SwissProt term	Description
TAF2_ARATH	Transcription initiation factor TFIID subunit 2

KEGG

KO	Description	Enzyme
K03128	transcription initiation factor TFIID subunit 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G73960	TBP-associated factor 2
Medicago sativa L.	MsG0880046670.01.T01	_
Oryza sativa L.	LOC_Os09g24440.1	expressed protein
Cucumis sativus L.	Csa004609	_
Glycyrrhiza uralensis Fisch.	Glyur000523s00021975.1	_
Codonopsis lanceolata	Cl_chr02_28050T	_
Arachis hypogaea L.	AH13G26210.1	Transcription initiation factor TFIID subunit 2 like

Expression pattern