Gene detail

Detail information of Am01G029100.1 Annotation

Gene ID	Annotation
Am01G029100.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G029100.1	mRNA	Chr01	175803175	175804785	+

Sequences

CDS:

>Am01G029100.1
ATGGCAGATGTCACCTATCTCCACCACCACCACGAACTCGACGACGATCAAACTCTAATCCCTTTACCCTATTGGTCCCCTCAAGATTTCGATTTCGATTTCTATTCCTCCGATCCCGAATTCCCTCCCAATCACCACCACTTTCGCGAAAACCAGGTTAATTTCGTCATGGATCTCTTCCAACAACGTGTTGAACAATCTCAGGTCATCGATCACACAGATCCCGTTTCCCAACCGTTAAACGACTCCGTTTTCGATGGTTTCGGTATCGATTTAGGGTTCACCGTCGACGATGATCCCGACGCTTCCACCGACGATTTCTTCTTCGGGAGAAGAGTTTCCGGATCTGAATCTGACAACCCCGTCCGCGTCTTTGAGTTTGAACCTGACTCCGACCAAGACGAAGAAGAGAACAACGAGGTTTACGGAATCTGCGAGCATTCGGACGAAGAACAGTTTCTCGAAAACGACGACGTTTCGAGCATTCCTCTCTGTTGGGACTCGCTTCAATTGGAAGATAATAGAGAGAACTACGAAGATTTTGAGTGGGAGGAAGTTGACGGTGGTGTCGATGTGCTGAGCATGTTGGCCGTTGACGATGATAGATCAGTTTCTGTTTCCGTGACTCCGATAATCGAAGAAGTACCAGACGTATTAGATGAGGTTAGCATCGTTAGGGAGAATTTGGAATGGCAAGTGTTGTTGAATTCGAACAATTTGAGAACGTTCCCTAATTTGGAAAACGAAAACGGCGACGTCACAATTGCAGAGCCTTATTTTGGGGACAATGATGATGACATTTACACAGCAGAATATGAAATGATGTTTGGTCAATTCGCCGAAAATGATAACCCTTTAACTGGTAGGCCACCGGCTTCTGTGTCCGTTGTTCAGAATCTTCCGTCGGTGGTTGTGACCAAAGATGACGTGGACAATAACAATGCTCTCTGTGCGGTTTGTAAGGATGAATTTGCTGTTGGGGAAGGGGCAAAGCAGTTACCCTGTTCTCATCGTTACCATGGTGATTGCATTGTGCCTTGGCTGGGGATTCGGAATACTTGCCCCGTTTGTCGCTATGAATTCCCCACTGATGATGCTGATTATGAGCGTAGGAAAGCTCAAAGATCTGCCCGGAGCCTCTGA

Protein:

Promoter(3k):

>AM01G029100.1
ATTTTTCAAATCAAACGTTAAAACCACACATTTAATTAGAGGTTCCCTTTCGGTAGAAAGGACGCGCGCGGTGCTAACACCTTCCTCGCACGTAATCGACCCCCGAACCTATATCTCTAGTTTTTCAAAAGACCATCCGCCTTGTCCAAAAGACCTTTTTTCAATGTTTTGGTCTTAAAATTAAAATATTGTTGGCGGCTCCAAATTTTTCCACGTTGTACATTGAGAAACCCAACCGGGGGATTTTTCGGGGTGCAACAGCAGGTGTGAACGGGTTTGTGTTCACCTAATTCTTCCCAAAGTGCTTTGAACTTAGTGTAATAGGAATTGATTGAGAGGGTACCTTGAGTGCAAGTTAGCATTGCACGATGCAGTTGAAAGATGCGAGCGCCGTTGTTTTGCTGGAAACGCGATTGCAGGTCACTCCAGATCAAGGAAGCAGAGTCGGAGAAGATGACACTAGCAGCAATTTCTGGAGATACAGAATTAAGGATCCAAGAAGCCACGACGTGATTGTTGCGACGCCAGAGTGCATACTCATCTGAGGTAGCTTTAGGTATCGGGATTTCACCATTGACAAACCCGGGCTTGTTCTTGCCGGAGTTTAGATACCAGAACAAGATTGGCATGGTCCGAATGGTGAAGATAGAATGGATTGGTGAGGTTTTCCATGGATTGAAACTGAGTAAAGGTTCAAGAATCAGGGAAAACGAAATGAAATTGGGGCAAAATCGAACAATTGATGAACGATTTCGAGGATGATTCGAACGAAAGCGAGAACGAATTGAAGAAATTGTAGAAGAAATCAGAGAAACACACACGATTTGTGAACGCGGAAGAACGAAAAGGGGAAAATCGTGAAGATGATGATTACTTCTGATACCATATTAAACTTGGCACAAGGAAGAAACTGAAGAAGAATTCATTGTATTCAACCAACCGAATTGTTACAATATAGCTTTGTATATATACAAGCTAAATCTCTATAATCTACATCAACAGAAACGGTTTCCAGCAACAGAAAAATGAACTGAAATCTAACTAAACTAACCACTTCAACTAATCTCTAGTTACAAGAGTCAAAAGCATCTAACTATGGTTACCTAACTAAGGTTGAGTAAATAAGAATAAAATATATAATCCTAATAAACTGTGTGGGAGATTGTCAGAAAGAAGATTGAAGGTTGATGGAAAAAAATTATAGAGAAAATAGAGTTAGGGAGTGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGATGAGGGGAGGAAGATTACATTGGGTGAGGAAGAAGATGATGTTTTTCCTCTTCAATAAAATGTAGGAGGTAGGAATTGTGACATCTGGGAGGAAGATTACATTGGGTGATGAAGAAGATGATATTTTTCTTTTTAAAAGTTGGTTTTGAAACTTGTCAAAGAAAAAGTAGTGGCTTTGGAATATGTAATATTAAAAAATTTATGTGATATGTAGATATTAATGACCTAGTTGTATGTAACCCTTCAATTTAATATTAAATTAAATAACAACACTTCGGGTGGATGTGGGTATCGATGAGCCTAACTTTTAGCAAATGAACTCGCTTGATAACATCCACTCTTAACTCTTTTTATGGCGTTTAAAACTCGAGACTCGCTCTAACCCACCCGCTACATCAATTTTCTGACTGGTTGCACTTATTTTTTGGTTAAATAAGTGTTAAAATGATAGTTATAAAGAAATTGGATTTCATAGATACATTTAATTATCAGATGCTTATCATTTTTGCTAGTGTGTTTCTCTCCTCATCCAGCTGCGTTTTCTTTGGTGAAGCAACCTGCAACCACCACACCTTTGGAATATATCCGTTAGCATACCCAACTACCGTATATGCTATAGTACACCAGCAACTACAATTCCTTTGACCAACAATCTTCTCTAATCATGATATAACCTTTGAATGCTTTATAAACTTACAACCTGTTGGACATCATCACTACATTCTAAAGAGTATTTCTGTAACAAACTCAAAGGTTAATTGGCTTTAGCATGAAGTGGAGTATAAGAAAATACATTTAGCATGTTGTTGCCATCCACATACCAACTCTTATCAATTATAAACATTTAGAATTTGATTGATTGTCCTCATATTGAAGAGATGTGTGTTTGTGATTTTAAATACACACAACGTGTGCAGTGTTATGACACACAAAAGTCACAAATCCAACACATATATGTCCAAATTTTAAATAAAATTTTCCTTTCGATTAGTTACATCACATCATAATTTCTTAATAACATCTAATAAAACATATAAATTCAAATAAAGAGTACTCATACTATTCAACAAACTTGGCATTTTTTATATAAAACAATTGTTTTTATAAAAGGAGAGGTTCAACCGTACTCGAGTTCGATTATTGGTAAGGAAACAATTTTAAGTTAGGTTTTACATAACTCACCATCAAGTTCGAGATTAGAGTTGACCCAAGGCAAGACCGCTAAAGCTAGGGCTTTTGACCTACTAACCAAAAAAATAGTTATCCTTAATTTTTATAAAGCAAAAAGACTTCATACAGTGACCAAAAGATCTGAACAAAAATTTGTTTTAAACATCCCTCACTAAAAAAGATTTTTGTGGTTACATTTATCTATGTGTTGAAATTTGAAAACTTCTAAAACATATAAATTGTCAAAAAGAAAAAGGTCCACATAGATAAAGATAGTTTTTTGTGAGGATTTTTTTTTTGACCAATTTTGTGAGGATTATTATGAGGCGTACAACGTGTGCAAAAGAGAGCAAGAGACGCTGTTCTTCCTCGTATTCCGGAGTCGTCAATACACAGTTGAAATAAAAGAAACCACTAAAACCAGGGGCACATCTGTCATTTCACGTCTCCACACGTTATAGCGAGGACCTGAACCTAACGAAACCCAACCCACAGTTTCACACCACACTCGCTTTTCCCGTCTCTCTTCTTCTTCTTCTACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	317	358	6.10E-11
PF17123.8	zf-RING_11	317	344	4.20E-09
PF13923.9	zf-C3HC4_2	317	357	4.40E-09
PF12678.10	zf-rbx1	334	358	3.80E-07
PF00097.28	zf-C3HC4	317	357	1.70E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0004839	ubiquitin activating enzyme activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A1S2YR88	_

SwissProt

SwissProt term	Description
RNG1L_ARATH	E3 ubiquitin-protein ligase RING1-like

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G08139	RING/U-box superfamily protein
Medicago sativa L.	MsG0680031061.01.T01	_
Oryza sativa L.	LOC_Os12g02620.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa009721	_
Glycyrrhiza uralensis Fisch.	Glyur000084s00009495.1	_
Codonopsis lanceolata	Cl_chr02_62140T	_
Arachis hypogaea L.	AH01G32800.1	E3 ubiquitin-protein ligase RING1-like like

Expression pattern