Gene detail

Detail information of Am01G028950.1 Annotation

Gene ID	Annotation
Am01G028950.1	K-box region and MADS-box transcription factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G028950.1	mRNA	Chr01	175135630	175150688	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G028950.1
TTTATTTCTTCTCTTTGTTGCACTATATATTGTTTTATCCATTTTGGTACCCTAAGCAAAGAGAGCATTTAAGAAAGCATTCTCATCTCTTAACCATTACAGGAAAGGGAGTTTCCGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTATGTTTTAGGCAAATTCGCAACTGTATCACCAAAAAAAATAAAATACCAAAATAGCACACTTTTTAGATTATTTACCAAACTAGCACACATCCAAAATTCAGGCCAGAAGTCGCCCCCACATGAAACGACTTCTGAACTGCATTTTGGAAATTTTTTTGATTTTTCAGTTCAGAAGTCGCCCCCACAGGAAACGACTTCTGAACTGAAAAAGCAAAAGAATTTCCAAAATCCAGTTCAGAAGTCGCCCCCACAGGAAACGACTTCTGAACTGGATTTTGCAAATTTTGTTGCTTTTTCAGTTCAAAAGTCGCCTCCCCCCAGGGTGACTTCTGAACTGTGTTTTTTTATTATTTTTTTCTTCTATATTAATTTAAATAAAATTAATTTAATTAATTTAGAAAATTAATATTGTTAATTCTAAATTAATTATAAATATTTTTGTGAAAAAAAAATTATGCGCTAAATAGAAATATGGAACTAACTGTATTGATTTAATTAGTAGCACATTACAAAAAACTGATAGAAATTGGCTATTCTATATTGCGGTTTGGACAGTTATTTTTGTTGTGACCCTGATTTCTACAAATACCGCATCTCTTGGTGCGACTACCCCTTTCTCTTTGATCCATCTCTGTACGAATACGGGTAGACTGTGGACAACCCTTTTTATCTCTCCGTTTAGATGGATCATGTTGCAGTTCTGGGCCATTGAAATCAGGCCATGACAACTCAGATGGCAATGGTGGGAACTCCTCAAAGTATGTATTGAAAACATACTGCATTTTGTACTGTGGTTGCACGAATTCCATGTGAATGTAATTAACTTTTGAACATGCCGCGATCACATGGGAACAAGGATAGTGCAGTGCCTGAAATTCCCCACACTCACACGTCATGTCTTTGAATTGAGGGGGGTTGTAGGAAGTATGGACCTTTTTTTGATTAAAAAGAAAGCCCAAGTAATGGGTAGGATTAAAAAGCAACGGACAGATTGCAACGGATAGATTTAGCAAGACACATAACCCTAGGTGTGCATTATAAAAAGAAAGGCAGTTCACTACAAATTGAAGGCTAGCCGTAATTAGGATAGGAAGCCTCACATAACAAAAGAAGCCGTACACAGAGAGAGAAAGAGCCACAACGGTAAAATCTAGAACGGTAGCAGTAGGTGTACGCAAACAGTGACGAAAAGGAGACACCGGTGCTCGGTGCTTCATGGGACAAAGACTGGCAAATTCGCATGAGGGGTGGTGCTTATAATTAATTTAGAATTAAGATTATTAATTTCGGGGAACTGTGTTGTTTTTTTAAGTATTTCTTCTATAGCGTAAATTAATTTTTTTTACCATTAATTATCTAATTATCTTATTTTAGAAATAACAAAATTAATTTTTAACTGTTTATTAGGGTTGTCAAGTTCTTGACCGTTGAACCTGCACGTTGCACTATGCACTATATATGCACTTTGTAATGTGCTACTAATTAAATCAATATAGTTAGTTCCATATTTCTATTTAGCGCATAATTTTTTTTTTCACAAAAATATTTATAATTAATTTAGAATTAACAATATTAATTTTCTAAATTAATTAAATTAAATTTATTTAAATTAATATAGAAGAAAAAGAAAAATAAAAAAACACAGTTCTGAAGTCACCCTGGGGGGAGGCGACTTCTGAACTAGAAATGGAAAAAAAAATTAAAATTTTTAGTTCAGAAGTCGTTTTTAGGGGTGTTCAGTGGTTTGGGTAAATCCGAACCAACCCGTTGCCCAATCCAAACCAAAGCGTTTGGTTTGGACAATTTTCGTGATCGGATCAAAACCGAACCAACCCGTAAAGACACGTACTCGTTGGGTTCGGATAACGAATTTTAAAAATTAAATCCAATCCAACCCGTGAACCCATATGTATGTCCGTTACCCTTTTACAATTTTACTCCTCTTCAACGTTTCCCACTAAATTCTCACACCCATAAACCATTCCTTTCTTCAAAATTCAAAGCGCATGTTTTCTAGGCAAAAATTCAAGCACTCAACATACGAGTATAAGTTATATTTCCGATTCTGATCAGGCCTAAAAGTTTGGTCCATAATTTTGGAGTTCAAGTCAAATATACTAGCGTTAAAGGCGATCATAATACAGATAATAACATAAGAAAACTTCAACAACAAAAACTTCAACATATGCGTTTGCGTTCTACTTCTACATGTTGAGTGCCTATCCTTCTTTATTCAACTCCATTACAGAACCAACAGAAACATCAATTAATTACTCATGCACGATTAAATTCTTGCCTTACTTTACTTTCTTCTTCATTTTTTTATGAATTAGACTAAACTACCAAAGAGCAATACTATGTTTTAAAAATTTGATAATATAACACATGACCCGCGAGCCCAATCCGAACCAACCCATCTAATATCGGGTCGGTTTGGTTAGGATTTTATAGGAAAACACACAAAATCCAAACCAAACCAAACCAATTAAATATACGGATTTAGTCAAAATCCATCCAAACCAACCCGTGAACACCCCTAGTCGTTTTAGTGGGTGGCGACTTCTACACTAAAAATTGGATGTGTGCTAGTTTGGTAAATAATCTAAAAAGTGTGCTATTTTGGTTTTTTTTTTGTGCTACAGTTGCGAATTTGCCTATGTTTTAAAAGAAAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00319.21	SRF-TF	10	57	6.10E-26
PF01486.20	K-box	102	168	1.40E-20

Gene family

Gene family	Subfamily
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0046983	protein dimerization activity	Molecular Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR036879	Transcription factor, MADS-box superfamily
IPR002100	Transcription factor, MADS-box
IPR002487	Transcription factor, K-box
IPR033896	MADS MEF2-like

trEMBL

trEMBL term	Description
A0A9D4XD70	_

SwissProt

SwissProt term	Description
EJ2_SOLLC	MADS-box protein EJ2

KEGG

KO	Description	Enzyme
K09264	MADS-box transcription factor, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G03710	K-box region and MADS-box transcription factor family protein
Medicago sativa L.	MsG0780036654.01.T01	_
Oryza sativa L.	LOC_Os06g06750.1	OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
Cucumis sativus L.	Csa004117	_
Glycyrrhiza uralensis Fisch.	Glyur000050s00005680.1	_
Codonopsis lanceolata	Cl_chr02_61950T	_
Arachis hypogaea L.	AH11G24850.1	MADS-box protein CMB1 like

Expression pattern