Gene detail

Detail information of Am01G028910.1 Annotation

Gene ID	Annotation
Am01G028910.1	transporter associated with antigen processing protein 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G028910.1	mRNA	Chr01	174943102	174949410	-

Sequences

CDS:

>Am01G028910.1
ATGAACGGATTAAGAAGCGAAAGAACCCCTCTCTTGGAGGCTGAGCGTGCTGCAAGGGGAAAGAGGCATGGTGATGCCTCAGCAGATCAAGTCTCAGACCTTGAACATGGTGATGCCGTGCCGGCGGCAAATGTGGGATTCTTTCGTGTCTTTTCACTTGCAAAGCCTGAAGCTGGCAAGTTGGTGATTGCTACGGTGGCTCTGTTTATTGCAGCCACATCGAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATTAGGACTCCTGAGGAGAAAGATAAAGCATTAAATGCTGTCAAGGACACCATACTAGAAATCTTTCTGATTGTTGTTATCGGTTCAATTTGTTCAGCACTTCGAGCCTGGCTATTTTATTCTGCCAGTGAAAGGGTTGTTGCACGGCTGAGGAAGAATTTGTTCAGTCACCTTGTCAACCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAACCTTTCTGAGGCAATGAGAAACTTGTCAACTGCATTAATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTATTTCGGTTGCTGTCCGTAAATTTGGCCGTTTCTTGCGCGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTTAGATCTTTTGCCCAGGAAGATTACGAAGTATCGCGCTACTCTGAGAAAGTTGATGAGACTCTTAACCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTAATTGTAGTTGTTATATATGGAGCTAATTTGACTATCAAGGGTGACATGTCCTCGGGCGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCAATATCTGGCCTCTCAGGATTATATACTGTAGTTATGAAAGCTGCGGGTGCTAGCAGAAGGGTATTTCAAATTTTGGATCGTGTCTCATCCATGCCTAAGTCGGGAGATAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAGCTTGATGATGTGTGGTTTTCCTATCCATCACGCCCTAGTCATCCGGTGCTCAAGGGCATTACAATAAAGCTGCAGCCTGGCTCCAAGGTTGCTCTTGTTGGTCCAAGCGGTGGTGGAAAGACTACAATTGCAAACTTGATTGAAAGATTTTATGACCCAACCAAAGGAAAAATTACGGTGAATGGGGTTCCACTCGTCGAAATATCACACAAACATTTGCACCGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAAGAGAACATAGCTTATGGATTTGATGGCAAAGTTGACGCTGTTGCTATAGAAAATGCAGCTAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAAAAATACCAGACCTTTGTTGGCGAGCGAGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTCGAGCCTTGCTTATGGACCCAAAAATTCTCCTACTAGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACCTAGTGCAGGATGCAATGGATTCTATCATGAAGGGAAGGACGGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCCAATACTGTTGCAGTTATTTCTGATGGCGCAGTAGTTGAAAGTGGCACTCATGATGAGCTTCTCGACAAAAATGGTGTCTATACGGCTTTAGTCAGGAGACAACTACAAACAACAAAAGCTGAAATTTAA

Protein:

Promoter(3k):

>AM01G028910.1
GAGATTTATTGAGTAGGAAATAAAAATAATATTTTGGTATTTTTTAGAGGGTGCTTCTAGTGTGAAAGAGCAAATTAAATCTTTCACCGGTGAAACACCAAAATTGACCATTGGATGTAGTATAAAAATTCATCAATGGTTGAGATTTAATATTGATTGATTCAATCTTAACCATTCATAGCATTTTAAACAATATCCAACGGTCAATTTTAGTGTTTCACCGGTGAGAGATTTGATTTGCTTTCTCACTCTAGAAGCACACTTTTTTAGATGGTAAAAATGTTGTACTGAGTCAAAAAAAAAGTTGTACTTTGGTTTTGTGACGAACAGAAATTTGTGTTTTTGTTCAATTTTCTGCCCCTACTTTTGTCAGGTTGTCCTTCAATTCTTGCATCACCAACAAGGTTTTCAATGTCATTATAAATTTCAACTCCAAAAAAAGTTGTACTTTGGTTTTGTGACGAACAGAAATTTGTGTTTTTGTTCAATTTTCTGCCCCTACTTTTGTCAGGTTGTCCTTCAATTCTTGCATCACCAACAAGGTTTTCAATGTCATTATAAATTTCAACTCCAAGTTATGATTACATAAATAATTTGAAACAACTCCATTAACATAAGCAACAAAAGAAAATATTATAAAATTCATAGCACATACCTTGTAACTGTGAGCGGGCCAAGAAGTGTCAATAACAAAGGAGAACCCTATCTAAGCCTTCTTTAAAGCATTTCTATAAGTAAATTTGCTCCATGACAATCCTTTTGCATGAACATTACTGAGTTGCCAGGAACAAGAAGTGATGCAAATTACCCCCTTCAAACTTCTACAACATAATTATGGAATAAGAGACGACCTACATTATTGAACCCCCTGTTTTACATTTCTGGAACCAAGAGTTTTAAGACATTGGCACTTTCAACGGTCATATTCTTAGATTTATCAAACGCACAAGGAGTCATACACAATTTATTCTTCTACTCTCCAAGTTGCAGAACATCACATTTATTGACAGTAAGTGTGTCAAACATTGTCTATCAGTGTCCAAATAACAACAAAGAAACCATATTGAAAAACAAGACATAGAAACAAAGATTGAGAACGAGAGATGACATTTTTTTTCCAAAGATAAGATTTATATCAAAGTTTTTCCTAAAACCAGAAACCCTAATTTATCCATTAATCACAACATTAGAGAAAGAGGAAAAGTGTTACCTTGGCTATGAAGAGATGGAAAAACAATTTATCTTCCTTTCACTACGGTAAGGTTGAAAGCACTCCTCACCAGCAAAATCGATCTTATCTGAATCCTGATTGAAAGAAGAGAAAAAACAAGAAGAGGAAAAAACAAATTAAAAATTACAAACAGGTGAGATGAAAAATGGAGAGAGGACGGAAAAACTAACGGAGGACGAAAATCTTCCCTTGCTAGAATGCTATGCAGAAGAGAAAACCAGGAAGAGGAATTTCGCAACCACAAATGTTAGGGTTTTGGTGTATGGCGATGGTTAGGGTTTTGGTGTGTGGTGATGGTTAGGGTTTTGTGGTGAGGCTTTGATGAGAGCGATGGTTCTGTGAGTATGTGTTTTTCTTGGTGAGGAAGCGCTGATTTCAGATACTTTTTGGTTGTGGGTTTTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTGAGAGTTAATGGGAGGGAAGGGAATTGAAAACAGTGCTTATGGGAGGGAAGCGAATTGGAGAGCGCGCTTAGTAAATTTTTGGGTCAGCGACGGATTCGTGATTCCTCGCTATTAGTGAGGGATGCCTTTCATCTCCAAATCCGTCTCTAAATGTCTTTTTGCTATTTTGTGACGAATTTAGAGACGAAATTTTTAGAGAGGGGTATATTTCGTCTCTATATTCGTCACATAAGTAAATCAGTGCTGACTACTTATTTTCGTAACTAAATCCCTCGCTAATAGTGAGAGATACTTATCCATCTCAAAAATCTCTCTCTAAAAACAACTTTTCTAGTAGTGTTTTAAGGAGGCCCCCCCCCCCCCTTTCCTATATCTCCATTGTAAGGGTTGGGCACCCCTTGTGCTCCAGAGTTTTTTGCTTATAAAAAAAAATTATTTGGATTAGATAGATTCAGATATTTTAAGCAAACCATCCAAATCAAAATTGTATTTTCTCTTTTAATCGGATGACCTTTTGCTTTATAATCGAACCTCATCGAGTCATCGTACCGTGAGTACCCCCACCCACTAATCTTTATGGACTAAATCAAGATTAGTTTTTTTTTTTGTTGAGAAATAGCTACTTTATTCATTAAAATAGCTAATTTATTTAGTCTTGTATTTTGAGAAAATTAATAGTAAGTGAGTATGATTATTACAATTTATATTTATTTATTTATTTATTTATGATGCTAATGACACGTGGCTTTAAATAAAGAGAGAGAAAGAAGTCAAACAGCCATTGTCTTGCCTCCGTGGGGGGATGGGGACCTACATTCACATTCACGGGCTGGATATTGGATATATACCTCTTCTTGATTCATTAGCAAATTACTACGAAGGCAAGTTGCCAGCTTGCCAGCATCAGGAAGGCAAGGGCAGAAGCAGGATGGATATTGGATATACCTCTTCTTGATTCATTAGCAAATTACTACGACGTCGTTGCTGACGTCTCCTTTCTGCCTAATAATCTTTTTAAAAAGGTGCACCACCAAACCAAAAATACAAAACGAAAAGCTTGTACAAAACAAAATACTTAGGTCTGCACGTCTGCAAAAATAATTTTCCGAATATACACGACGTGAAATCTAATCCACGCGGTCAATATCAACCTCTTAAGATCCTTTCATATTTTTTATTATCATTATTATTATTATTATTATTATTATTATTATTATGGATATCACCTGCTCTTAATAAGTCTTGGTCTTTGCTATATTATTGATACGATACTCGTCGACGAGTGGAAGGGGCATTTTGTGAGTGAGGTTCAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00664.26	ABC_membrane	61	334	9.60E-63
PF00005.30	ABC_tran	404	554	1.50E-35

Gene family

Gene family	Subfamily
Transporter family	ABC

Gene Ontology

GO term	Description	Category
GO:0090374	oligopeptide export from mitochondrion	Biological Process
GO:0015421	ABC-type oligopeptide transporter activity	Molecular Function
GO:0005743	mitochondrial inner membrane	Cellular Component
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR039421	Type 1 protein exporter
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR017871	ABC transporter-like, conserved site
IPR003439	ABC transporter-like, ATP-binding domain
IPR036640	ABC transporter type 1, transmembrane domain superfamily
IPR011527	ABC transporter type 1, transmembrane domain
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A1S2YR84	_

SwissProt

SwissProt term	Description
AB25B_ORYSJ	ABC transporter B family member 25

KEGG

KO	Description	Enzyme
K05657	ATP-binding cassette, subfamily B (MDR/TAP), member 10

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G39040	transporter associated with antigen processing protein 2
Medicago sativa L.	MsG0880046542.01.T01	_
Oryza sativa L.	LOC_Os03g54790.1	ABC transporter, ATP-binding protein, putative, expressed
Cucumis sativus L.	Csa004345	_
Glycyrrhiza uralensis Fisch.	Glyur000050s00005686.1	_
Codonopsis lanceolata	Cl_chr03_39420T	_
Arachis hypogaea L.	AH01G33080.1	ABC transporter B family member 25 like

Expression pattern