| Gene ID | Annotation |
|---|---|
| Am01G028730.1 | histone deacetylase 5 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G028730.1 | mRNA | Chr01 | 174487853 | 174496753 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00850.22 | Hist_deacetyl | 38 | 338 | 9.50E-95 |
| Gene family | Subfamily |
|---|---|
| Epigenetic Regulators | HDA5 |
| GO term | Description | Category |
|---|---|---|
| GO:0006325 | chromatin organization | Biological Process |
| GO:0000118 | histone deacetylase complex | Cellular Component |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process |
| GO:0046872 | metal ion binding | Molecular Function |
| GO:0005737 | cytoplasm | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR023696 | Ureohydrolase domain superfamily |
| IPR000286 | Histone deacetylase family |
| IPR037138 | Histone deacetylase domain superfamily |
| IPR023801 | Histone deacetylase domain |
| IPR017320 | Histone deacetylase class II, eukaryotic-type |
| trEMBL term | Description |
|---|---|
| A0A151SPL0 | _ |
| SwissProt term | Description |
|---|---|
| HDA5_ARATH | Histone deacetylase 5 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G61060 | histone deacetylase 5 |
| Medicago sativa L. | MsG0880046531.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g41090.1 | histone deacetylase, putative, expressed |
| Cucumis sativus L. | Csa005421 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000050s00005709.1 | _ |
| Codonopsis lanceolata | Cl_chr02_62780T | _ |
| Arachis hypogaea L. | AH11G24510.1 | Histone deacetylase 5 like |