Detail information of Am01G028290.1 Annotation
Gene IDAnnotation
Am01G028290.1 Pentatricopeptide repeat (PPR) superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am01G028290.1mRNAChr01173394796173397416+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF01535.23PPR3573874.60E-47
PF13041.9PPR_22523022.90E-43
PF13041.9PPR_23544022.90E-43
PF14432.9DYW_deaminase5706627.40E-35
PF20431.1E_motif4725342.70E-17
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0009451RNA modificationBiological Process
GO:0043231intracellular membrane-bounded organelleCellular Component
GO:0016020membraneCellular Component
GO:0003723RNA bindingMolecular Function
GO:0004519endonuclease activityMolecular Function

InterPro
InterPro termDescription
IPR011990Tetratricopeptide-like helical domain superfamily
IPR046960Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885Pentatricopeptide repeat
IPR046848E motif
IPR032867DYW domain

trEMBL
trEMBL termDescription
A0A9D5ASC4 _

SwissProt
SwissProt termDescription
PP267_ARATHPentatricopeptide repeat-containing protein At3g47530

KEGG
KODescriptionEnzyme
K23541Ca2+/H+ antiporter, TMEM165/GDT1 family

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G47530 Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.MsG0880046460.01.T01 _
Oryza sativa L.LOC_Os08g33700.1pentatricopeptide, putative, expressed
Cucumis sativus L.Csa014450 _
Glycyrrhiza uralensis Fisch.Glyur000596s00021327.1 _
Codonopsis lanceolataCl_chr03_10960T _
Arachis hypogaea L.AH01G34050.1Pentatricopeptide repeat-containing protein At3g47530 like

Expression pattern