Gene detail

Detail information of Am01G027890.1 Annotation

Gene ID	Annotation
Am01G027890.1	homeobox 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G027890.1	mRNA	Chr01	172293017	172298180	-

Sequences

CDS:

>Am01G027890.1
ATGGTGTCGTCGTCGTTATACCGTCGAAAATGTCGTCGGTCCTCTTCTCCGGTGTTCTCGTCACCGTCAGCCCTCGCCACCGGCCGTGGAACAGCCGGTCGTCATCATCTCCTTCGCGCCGCCACGAGTGACCATCTCGTCGCTGTCGTAACGTCACCAACAGTGCATTACCATACAATTCACGACGCAACTGCCACTGTCTCCCTCGCCGCCGGCCATGGAACGGTCGGTTCGAGATCCATGGTGAGTTTTGAAGATGTTAAAGGAACGAAGAGATCGTTCTTCAGCGCATATGATGAAAATGGAGAGGATGAGTACCTTTATCAAGCGGAGAAGAAACGGCGTCTAACTGCGGATCAGGTTGAGTTTCTAGAGAAAAGCTTCGAAGTGGAGAACAAACTCGAACCGGAGAGAAAAACCAAGATAGCTAAAGACCTTGGTTTGCAGCCACGTCAAGTTGCTATTTGGTTTCAGAACCGTAGAGCAAGATGGAAGTCTAAACAACTTGAGAAGGATTATGAATCTCTAAATGATAGCTATGAATCCCTTAAAACCGCTTATGATAACATCCTCAAAGAGAAAGAGAGGTTACAAGCTCAGGTAGCGAGCCTAGCTGAAAAGGTAGTTGGAAGAGAGAAATTACAAGAGGTGAAGGGATTGTTGGAGGAACCACAAAAGAAGCCTTTGCTTGAATCAATTTCGGAGGGTGGAGAGTACAAAGTCAGTGTTGGGGGTTGTATTAGTAATAATAAACAAGAGGATGTTACTATTAGTAGTTCAACTAGGAGTGACATTTTGGATTCTGAAAGTCCACGTTACACGGATGGAGGAGCACTGGTAGAGACAGGTGATTCTTCCTATGCATTTGAACCTGATCAATCTGACCTATCATCACAAGATGAAGAAGATAGCCTTTTGCATGATCCGTACATGTTCACAAAACTTGAAGATCATCATCATCATCATCATCATGTCAATTACTCTGACCCGCCTCAAAGTTCCAGTAATTTTGGATTTCTTGAGGAAGAAGATCATACCTTTTGGCCATGGTCTTACTAG

Protein:

Promoter(3k):

>AM01G027890.1
CTTTCTTTTTACTTCTGTCTATCTTTGAAATGATATTTTGTGATAATTGATACTAGATTGTGAAACATGTGGCATAATCAAAAGCATTACAATCATTACGAAATTTCCGAGAATCACAGAAGAGATATAGTCTTTCATTAAAATACCTATAAGGAAGAAAGGAACCGCAGGAATAGAGCAATAAATGCGCGATCATCTCAAATGATAAGTCCCAGTCATGCGCAATCGACTTCGCAGTACGAATGCACTTGATAGCCTCGTAACCCCATGCCGGAAGTCCTGCGAGTTAAAAGATCAGCAAAAAAAGAGAGGCCCAAAAAGAAAAGCAAAAAAAAAGACCAAAAAAAAAAGCAAAAAAGAAAAGGCAAAAGAAAAAAAATCATCCACATTGCATTCATTACCCCCACCAAGGCATAAATCATTCCATCATGTAACCATGAATTTCATCGTAGCACCTGCATCTAAGCAGTATAATTGCATTCATATCTTATCTGCATCCGCATACAACCGTTTGTCAACTTTCTCATCCCATCCCATCAGGTTCAACAGCCAAGGTATACCCATTTCATTCATCATCACACCAGATACCAATCATTGCACGTTCGTCACATGTATAACATTGTTGGCTTCGATAGATGTGGCAAGTGCCGGTCTCATCGCTTGCCAAAAGTTTTTTACATCACTAATCATATCATTATACCATGCATTCGCATGTTTTTCTTTATCCACCATGGCATTCGCATCGAAGCATTACATTTGCGTCACATTCGCACATTGCATTTCATACACTCATTACATACTAAGAAAAAAAAGGAAAGGCAAAAAAGCAAAAGGAGGGAAAACCGCTCATTCCATTACATTCATCATTAATCAACACAATCACATCCATATCTTATCTGCATTCACATACGTTGTTTGCCAACCTCCATGTTCCACCAACTTCAACTCACATCATCTGCCATGTTTCATTCATCCCATCAGACACCTACCATTTCACATACCTATATTGCACGCATGCATCATTCATCGCATTTTTAGACATGCCAAATATAGATAGTTTTTCCCTTCTCAGGTAAATGCATTCATTAGGTATGTTTTAGGCAAGTACGCCATGTGTCAAACCCAATAGTTTGTTCCCTCAAAGTCAGTGCTCCAAGCAATGGTCTCATATCACAACTCACAGTCTCGGACCCCCAGCGGTCCCTCGGAGCCCAAGCGCTCCTTCAGACCTTCAATGGTCATTCATTCCAGATCACACGTCGCATTATCGAGCAACCGACGGATCATCCGACCCCAGGTCCTTCAGTTCAGTTCGAACCAATATGTCAAAGCAACGACTTCGAACTCTACCTTCAAGATCACTATGTCGACACTGAGCGCGACGGATCGTCCGACCCCAAGTCCTTCAGACTAGCTGTGTCAGCCTAAGACATGGTGGACGTCCTTCGAGGTGAGCAAATTAGGTCAACGACCTGATCTTGCCCCCGCGGCCGCTCGAAAAAGGTCACCCCCAAGCAGACCGTTCTACTAGTACCATTGCTAGTTTGCGCTCTTTTGGACCCCCAGTGGTCCTTCAAAGCCCCAGTGCACCTTCGGACCCCAAGTGGTCCTTCAGGGTTTAGAAAACCCCTTGGAGCCCCAGTGCTCCCTTAGAGCCCAAATGCTCTTCCAGAGCCCCAGTGCTCCTCCAGATCCCCAGTGATCATTTCTTTATTGTTCTCGGTTAACACGCCAAGTATCGTCCCTTTTTTCCCTAACTCATCTTCCCCCTAAGCGGACAAAATTAGAGTCTATTCTATCTTTATTTTTATTTCTACTACGAAAATCTGAAAACCATTCACCTTTCCTAGTAAAATATAAATAAAGAGGGGCAGCTGTTGTACCCCAATTTTGTCCGATCTTTTTTCGCAATCATTTCTATCATTTATTTTGCGTGTCATAAGTCACAAGTCCTATTGCTACGAGATCAGTTTCTGACTCATTCGATGTTGTCTCGTTTAGTTAGGTCAGCGTTCAGTAATTTGTTCAATCGGGCCGAAATGCCTTTTTGTCTAATTGAACCTATATTTGCGCAATCGGGCCTTAATGCAATTTATTTAATCGGGCCTATGTGAGTATTTTATTTAGTTTAGGGCCTGTTTTAGTCTTCTTTGTTTATTTAATCAAAAAATACTAAAATAAAACAAAAAATGAATAAAAATAAAGAAAACAGAGTTTATCAAATATGAGAAAAAGGCAGCAGCTGCGCCTCTCTTCCTTCTTGCTCTCCTTGGTGAGCAAGCCTTCTCAACCCTAATTTTGATCCTGAAATGGAAAAAAGATCAATCACCATAATTATTTGATTCTGATTTTTACCTATAAAAGCAAAATGAATTTCATTAGAAAAGGGACCGAAAAACACAAAAAAAATTCACAAAAACAACAAGTGATTAGGTTTTTACACCAAAACCCTAATCAACAAAACACTTGAAAATTCTGAAACAAAGGAGAGGAGCAGCAGTAGCAGTGAAGGGAAAAGCAAAGCAAGGTAGCAAGGTTCAGCAACAGAGCAAACAAAAGGGGACTTATCAGAAGCTGGAATTTAGGTAAGTTCCCGTAACAAATTTTATCAAGTTTCATTGATTTCAGTTGAACACTTTTTTTTTCCTTCTCTTCTTTTTATCTATTATAGTTCACATATGCATTATTGGATAGCCATAACGATAACTCTGTACATAGAATTAAGGCAATAGGAAATTTAAAAAAGAAACTTGTCTTGATATCAAACAAGTAAATAGATAAAAAAAAAGGGTAAGGGTGAGTTCATATTGTTGTGTGTGCAGGGTCAGTTCCTGTTGTTGTTATTGTTAAACAAAAAAAACATGGTTTATTTTCAGATATAGGTTTATTTAGATAAACAAAAAAATCAATCCAAAAGAATCAGTAGGAAAAACCTTAGGATCAAGCTAAGGAGATCATAGGAGTAGAAAAAGGACGAAAACTAACCTCCGGCCACCGAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00046.32	Homeodomain	112	165	1.20E-17
PF02183.21	HALZ	167	208	5.00E-15

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-HD-ZIP
Transcription Factors Family	HB-WOX

Gene Ontology

GO term	Description	Category
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR003106	Leucine zipper, homeobox-associated
IPR009057	Homeobox-like domain superfamily
IPR045224	Homeobox-leucine zipper protein, class I, plant
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain
IPR000047	Helix-turn-helix motif

trEMBL

trEMBL term	Description
A0A8B8JJ19	_

SwissProt

SwissProt term	Description
HAT5_ARATH	Homeobox-leucine zipper protein HAT5

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G01470	homeobox 1
Medicago sativa L.	MsG0880046412.01.T01	_
Oryza sativa L.	LOC_Os02g49700.1	homeobox associated leucine zipper, putative, expressed
Cucumis sativus L.	Csa003785	_
Glycyrrhiza uralensis Fisch.	Glyur000204s00012408.1	_
Codonopsis lanceolata	Cl_chr02_18170T	_
Arachis hypogaea L.	AH01G34400.1	Homeobox-leucine zipper protein HAT5 like

Expression pattern